Wall clock time and date at job start Mon Mar 30 2020 05:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.26387 * 2 1 4 4 C 1.53749 * 110.29785 * 237.83240 * 2 1 3 5 5 C 1.51222 * 104.53714 * 241.06820 * 4 2 1 6 6 C 1.38171 * 130.98877 * 180.02562 * 5 4 2 7 7 C 1.38225 * 120.15062 * 180.25168 * 6 5 4 8 8 C 1.38307 * 119.83208 * 359.42150 * 7 6 5 9 9 C 1.37820 * 120.23211 * 0.59198 * 8 7 6 10 10 C 1.38603 * 108.53739 * 0.02562 * 5 4 2 11 11 N 1.39575 * 111.64805 * 359.97438 * 10 5 4 12 12 S 1.65606 * 124.95283 * 180.02562 * 11 10 5 13 13 O 1.42101 * 106.40233 * 203.51818 * 12 11 10 14 14 O 1.42097 * 106.40233 * 336.43551 * 12 11 10 15 15 C 1.76197 * 107.21880 * 89.97949 * 12 11 10 16 16 H 1.08003 * 119.99819 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00293 * 180.02562 * 15 12 11 18 18 N 1.31513 * 119.99827 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00256 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47003 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47240 * 119.99464 * 19 17 15 22 22 H 1.48498 * 109.47062 * 239.99881 * 19 17 15 23 23 H 1.08999 * 109.46821 * 297.92819 * 1 2 3 24 24 H 1.08998 * 109.47158 * 57.93039 * 1 2 3 25 25 H 1.09003 * 109.46917 * 177.92953 * 1 2 3 26 26 H 1.09008 * 110.42225 * 122.30564 * 4 2 1 27 27 H 1.08995 * 110.42393 * 359.83457 * 4 2 1 28 28 H 1.08002 * 119.92127 * 359.97059 * 6 5 4 29 29 H 1.08002 * 120.08509 * 179.69744 * 7 6 5 30 30 H 1.08006 * 119.88203 * 180.28438 * 8 7 6 31 31 H 1.08000 * 119.86257 * 179.72222 * 9 8 7 32 32 H 0.96998 * 120.00304 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0225 0.0000 4 6 2.0634 -0.7677 -1.2207 5 6 2.8592 -1.9109 -0.6320 6 6 3.5680 -2.9294 -1.2399 7 6 4.2204 -3.8756 -0.4721 8 6 4.1723 -3.7941 0.9078 9 6 3.4664 -2.7803 1.5188 10 6 2.7990 -1.8241 0.7500 11 7 2.0382 -0.7299 1.1645 12 16 1.7517 -0.3166 2.7424 13 8 0.5555 0.4505 2.7455 14 8 1.9149 -1.5048 3.5044 15 6 3.0435 0.7741 3.2386 16 1 3.8214 1.0432 2.5395 17 6 3.0617 1.2834 4.5198 18 7 2.1146 0.9554 5.3713 19 14 4.4316 2.4392 5.0461 20 1 5.3664 2.6480 3.9112 21 1 3.8496 3.7428 5.4548 22 1 5.1681 1.8451 6.1905 23 1 -0.3633 0.4813 0.9080 24 1 -0.3633 0.5456 -0.8708 25 1 -0.3633 -1.0270 -0.0371 26 1 2.7074 -0.1259 -1.8220 27 1 1.2373 -1.1488 -1.8210 28 1 3.6086 -2.9888 -2.3175 29 1 4.7700 -4.6740 -0.9484 30 1 4.6856 -4.5304 1.5085 31 1 3.4291 -2.7250 2.5968 32 1 2.1272 1.3139 6.2725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:22 Heat of formation + Delta-G solvation = -85.790259 kcal Electronic energy + Delta-G solvation = -18758.123321 eV Core-core repulsion = 15808.786179 eV Total energy + Delta-G solvation = -2949.337143 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39543 -37.98396 -37.33895 -36.32814 -35.30301 -33.23055 -31.76132 -30.09298 -28.39675 -27.28739 -23.61505 -22.56716 -22.26712 -20.89491 -19.46373 -18.49167 -17.36152 -17.23809 -16.63952 -16.19951 -15.89229 -15.78516 -15.36449 -14.70436 -14.24755 -14.05758 -13.77124 -13.70403 -13.44456 -13.32627 -13.11555 -13.08230 -12.70278 -12.64446 -12.46600 -12.36304 -12.24819 -11.74438 -11.54056 -11.39652 -11.34584 -10.95518 -9.64371 -8.95004 -8.66608 -7.62491 0.02374 0.51922 0.59559 1.26600 1.27117 1.45928 2.12212 2.46333 2.52067 2.91661 3.54826 3.59939 3.62669 4.02414 4.06557 4.16492 4.26702 4.36058 4.43756 4.66151 4.69966 4.80599 4.85132 4.96627 5.10499 5.11675 5.18174 5.36914 5.46442 5.53512 5.67776 5.71775 5.78177 5.84271 6.25967 6.65239 8.10251 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.008141 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.302660 B = 3438.392862 C = 3935.826162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.126 3.874 3 H 0.089 0.911 4 C -0.064 4.064 5 C -0.150 4.150 6 C -0.072 4.072 7 C -0.147 4.147 8 C -0.093 4.093 9 C -0.193 4.193 10 C 0.140 3.860 11 N -0.946 5.946 12 S 2.715 3.285 13 O -1.017 7.017 14 O -1.027 7.027 15 C -1.040 5.040 16 H 0.113 0.887 17 C 0.072 3.928 18 N -0.890 5.890 19 Si 0.992 3.008 20 H -0.250 1.250 21 H -0.252 1.252 22 H -0.255 1.255 23 H 0.059 0.941 24 H 0.110 0.890 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.144 0.856 31 H 0.107 0.893 32 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 -3.897 -14.709 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.022 3.978 3 H 0.107 0.893 4 C -0.102 4.102 5 C -0.154 4.154 6 C -0.091 4.091 7 C -0.166 4.166 8 C -0.111 4.111 9 C -0.215 4.215 10 C 0.043 3.957 11 N -0.769 5.769 12 S 2.820 3.180 13 O -1.007 7.007 14 O -1.017 7.017 15 C -1.174 5.174 16 H 0.131 0.869 17 C -0.141 4.141 18 N -0.521 5.521 19 Si 0.809 3.191 20 H -0.173 1.173 21 H -0.176 1.176 22 H -0.179 1.179 23 H 0.078 0.922 24 H 0.129 0.871 25 H 0.075 0.925 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.180 0.820 29 H 0.180 0.820 30 H 0.162 0.838 31 H 0.125 0.875 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.478 -4.092 -13.911 14.912 hybrid contribution 0.647 0.875 1.206 1.624 sum 4.125 -3.217 -12.705 13.740 Atomic orbital electron populations 1.22549 0.93770 1.02934 1.04891 1.21767 0.95421 0.96469 0.84142 0.89264 1.21218 0.99802 0.93691 0.95500 1.20554 1.03382 1.00214 0.91282 1.20799 0.94901 0.91970 1.01383 1.21379 1.01865 1.00707 0.92652 1.21115 0.97277 0.96438 0.96298 1.21179 1.02529 0.97457 1.00353 1.18550 0.93373 0.88368 0.95436 1.56559 1.60782 1.34853 1.24663 1.00263 0.74992 0.73571 0.69190 1.93288 1.49369 1.72665 1.85387 1.93293 1.88259 1.51428 1.68748 1.30840 1.31004 1.47989 1.07528 0.86900 1.26048 0.98643 0.95418 0.94034 1.69970 1.33170 1.40967 1.08001 0.85081 0.77058 0.77507 0.79423 1.17284 1.17566 1.17948 0.92229 0.87146 0.92533 0.86762 0.86779 0.81959 0.81995 0.83814 0.87452 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.06 9.02 71.98 0.65 -5.41 16 2 C 0.13 4.39 3.86 45.24 0.17 4.56 16 3 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 4 C -0.06 -1.62 6.58 30.27 0.20 -1.42 16 5 C -0.15 -4.59 6.23 -19.63 -0.12 -4.71 16 6 C -0.07 -1.70 10.03 22.25 0.22 -1.48 16 7 C -0.15 -3.47 10.06 22.28 0.22 -3.24 16 8 C -0.09 -2.85 10.02 22.19 0.22 -2.63 16 9 C -0.19 -8.05 9.43 22.52 0.21 -7.84 16 10 C 0.14 5.78 6.63 38.34 0.25 6.04 16 11 N -0.95 -42.66 3.19 -317.40 -1.01 -43.67 16 12 S 2.72 154.55 5.08 -56.49 -0.29 154.26 16 13 O -1.02 -61.26 15.04 -128.00 -1.93 -63.18 16 14 O -1.03 -64.13 15.26 -128.00 -1.95 -66.08 16 15 C -1.04 -60.02 9.75 67.73 0.66 -59.36 16 16 H 0.11 6.06 7.81 -2.91 -0.02 6.03 16 17 C 0.07 4.10 5.46 84.65 0.46 4.56 16 18 N -0.89 -53.81 13.19 21.45 0.28 -53.52 16 19 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 20 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H 0.06 2.47 5.64 -2.39 -0.01 2.45 16 24 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 26 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.11 2.21 7.70 -2.39 -0.02 2.19 16 28 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.11 5.26 6.09 -2.91 -0.02 5.25 16 32 H 0.30 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -79.14 281.99 1.42 -77.72 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 1.13 Total: 21.29 kcal Atomic # 6 Polarization: -74.08 SS G_CDS: 3.16 Total: -70.92 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -0.73 Total: -97.20 kcal Atomic # 8 Polarization: -125.39 SS G_CDS: -3.88 Total: -129.26 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 154.55 SS G_CDS: -0.29 Total: 154.26 kcal Total: -79.14 1.42 -77.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.072 kcal (2) G-P(sol) polarization free energy of solvation -79.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds