Wall clock time and date at job start Mon Mar 30 2020 04:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00048 * 2 1 4 4 H 1.48499 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47158 * 300.00195 * 3 2 1 6 6 H 1.48500 * 109.47578 * 60.00029 * 3 2 1 7 7 C 1.37873 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00263 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00236 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40099 * 66.45810 * 9 7 2 11 11 O 1.42103 * 106.40026 * 293.54086 * 9 7 2 12 12 N 1.65598 * 107.22144 * 179.97438 * 9 7 2 13 13 C 1.46924 * 120.54357 * 262.05224 * 12 9 7 14 14 C 1.53424 * 107.79418 * 224.77381 * 13 12 9 15 15 C 1.52852 * 108.86377 * 296.83753 * 14 13 12 16 16 C 1.50589 * 110.49060 * 51.32054 * 15 14 13 17 17 C 1.38501 * 118.93212 * 159.47858 * 16 15 14 18 18 C 1.38131 * 120.30564 * 179.59115 * 17 16 15 19 19 C 1.38306 * 120.16023 * 0.27380 * 18 17 16 20 20 C 1.38026 * 119.91161 * 359.53420 * 19 18 17 21 21 C 1.38608 * 121.50438 * 339.23162 * 16 15 14 22 22 H 0.97001 * 119.99679 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.79328 * 344.35407 * 13 12 9 24 24 H 1.09001 * 109.79457 * 105.14213 * 13 12 9 25 25 H 1.08993 * 109.57422 * 56.65536 * 14 13 12 26 26 H 1.09003 * 109.57072 * 176.90200 * 14 13 12 27 27 H 1.08998 * 109.26837 * 291.05917 * 15 14 13 28 28 H 1.08995 * 109.27122 * 171.58690 * 15 14 13 29 29 H 1.07995 * 119.84956 * 359.57134 * 17 16 15 30 30 H 1.07998 * 119.91573 * 179.97438 * 18 17 16 31 31 H 1.08002 * 120.04258 * 179.80092 * 19 18 17 32 32 H 1.07995 * 119.98344 * 180.29077 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0019 10 8 0.4509 -2.7961 -1.2475 11 8 0.4519 -2.7944 1.2520 12 7 2.2482 -3.9355 0.0016 13 6 2.6259 -4.6029 -1.2516 14 6 2.6592 -6.1137 -0.9867 15 6 3.7429 -6.4100 0.0496 16 6 3.5721 -5.5278 1.2580 17 6 4.1528 -5.9117 2.4554 18 6 4.0212 -5.1197 3.5794 19 6 3.3029 -3.9394 3.5176 20 6 2.7243 -3.5473 2.3273 21 6 2.8540 -4.3439 1.1948 22 1 -0.4850 0.8401 0.0004 23 1 1.8908 -4.3796 -2.0248 24 1 3.6110 -4.2612 -1.5695 25 1 1.6911 -6.4390 -0.6059 26 1 2.8833 -6.6421 -1.9134 27 1 4.7226 -6.2288 -0.3925 28 1 3.6738 -7.4543 0.3539 29 1 4.7108 -6.8347 2.5106 30 1 4.4762 -5.4253 4.5099 31 1 3.1985 -3.3232 4.3984 32 1 2.1672 -2.6235 2.2766 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:05 Heat of formation + Delta-G solvation = -68.127662 kcal Electronic energy + Delta-G solvation = -18822.014966 eV Core-core repulsion = 15873.443731 eV Total energy + Delta-G solvation = -2948.571235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.67247 -36.20678 -35.41899 -34.17213 -33.28032 -33.06515 -30.03309 -29.12864 -26.25686 -24.75649 -22.85720 -22.29807 -19.52666 -18.84133 -17.83353 -16.43611 -16.21808 -15.62352 -15.16971 -14.60358 -14.23151 -14.13172 -13.56592 -13.34416 -13.13646 -12.92228 -12.68133 -12.21843 -12.06665 -11.41393 -11.31206 -11.23764 -11.02551 -10.94686 -10.63447 -10.54729 -10.42066 -10.39938 -9.89572 -9.73670 -9.33908 -8.90633 -8.27705 -7.37761 -6.78754 -5.43457 1.82419 1.94390 1.99648 3.01072 3.09540 3.17590 3.96641 4.20777 4.32155 4.54264 4.96817 5.07717 5.16245 5.33217 5.49841 5.58431 5.63613 5.70736 5.76373 5.86048 5.90318 6.03522 6.10236 6.15444 6.31179 6.39370 6.53020 6.65661 6.80525 7.01214 7.13732 7.24964 7.30843 7.68604 7.88846 8.78933 10.14234 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.008326 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.508238 B = 3362.274951 C = 3946.152440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.133 3.867 3 Si 0.923 3.077 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.269 1.269 7 C -1.016 5.016 8 H 0.106 0.894 9 S 2.701 3.299 10 O -0.994 6.994 11 O -0.988 6.988 12 N -0.947 5.947 13 C 0.107 3.893 14 C -0.133 4.133 15 C -0.070 4.070 16 C -0.135 4.135 17 C -0.099 4.099 18 C -0.162 4.162 19 C -0.090 4.090 20 C -0.160 4.160 21 C 0.202 3.798 22 H 0.292 0.708 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.436 -8.785 1.560 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.085 4.085 3 Si 0.746 3.254 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.194 1.194 7 C -1.150 5.150 8 H 0.124 0.876 9 S 2.804 3.196 10 O -0.985 6.985 11 O -0.978 6.978 12 N -0.766 5.766 13 C -0.017 4.017 14 C -0.172 4.172 15 C -0.107 4.107 16 C -0.140 4.140 17 C -0.117 4.117 18 C -0.181 4.181 19 C -0.109 4.109 20 C -0.181 4.181 21 C 0.103 3.897 22 H 0.103 0.897 23 H 0.121 0.879 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.245 -8.829 1.424 11.509 hybrid contribution 0.931 1.215 0.011 1.531 sum 8.176 -7.613 1.434 11.264 Atomic orbital electron populations 1.69900 1.06793 1.30902 1.39699 1.24763 0.94504 1.00879 0.88361 0.86085 0.80532 0.80053 0.78703 1.18443 1.19491 1.19418 1.30496 1.06287 1.10986 1.67229 0.87565 1.01119 0.72100 0.73263 0.73101 1.93357 1.72294 1.87337 1.45479 1.93385 1.72525 1.87128 1.44800 1.56493 1.57539 1.52381 1.10187 1.21624 1.02021 0.92228 0.85868 1.21830 0.99918 0.96133 0.99315 1.20294 0.99003 0.98134 0.93246 1.19392 1.03173 0.95255 0.96131 1.20750 0.99588 0.99338 0.92068 1.20885 1.02685 0.96365 0.98172 1.20886 0.96554 0.96340 0.97104 1.21693 1.02318 1.01902 0.92193 1.17377 0.93675 0.92874 0.85756 0.89724 0.87862 0.91213 0.91178 0.90351 0.91032 0.90946 0.86590 0.86709 0.85983 0.82750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.34 13.19 55.43 0.73 -23.61 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 3 Si 0.92 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -1.02 -27.72 9.22 30.60 0.28 -27.44 16 8 H 0.11 2.71 7.81 -52.49 -0.41 2.30 16 9 S 2.70 72.26 4.40 -107.50 -0.47 71.79 16 10 O -0.99 -28.65 16.45 -57.17 -0.94 -29.59 16 11 O -0.99 -28.53 14.97 -57.17 -0.86 -29.39 16 12 N -0.95 -20.48 3.27 -58.09 -0.19 -20.67 16 13 C 0.11 1.88 6.49 -3.59 -0.02 1.86 16 14 C -0.13 -1.87 6.11 -26.59 -0.16 -2.04 16 15 C -0.07 -0.93 5.78 -28.01 -0.16 -1.09 16 16 C -0.14 -2.27 5.76 -104.44 -0.60 -2.87 16 17 C -0.10 -1.45 9.66 -39.52 -0.38 -1.83 16 18 C -0.16 -2.40 10.04 -39.60 -0.40 -2.80 16 19 C -0.09 -1.55 10.05 -39.63 -0.40 -1.95 16 20 C -0.16 -3.37 8.57 -39.35 -0.34 -3.70 16 21 C 0.20 4.12 6.26 -83.72 -0.52 3.59 16 22 H 0.29 7.53 8.31 -40.82 -0.34 7.20 16 23 H 0.10 1.86 6.80 -51.93 -0.35 1.51 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 31 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.16 3.67 5.07 -52.49 -0.27 3.40 16 LS Contribution 279.39 15.07 4.21 4.21 Total: -1.00 -33.41 279.39 -8.89 -42.30 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.55 Total: 4.38 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: -2.80 Total: -34.70 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.54 Total: -44.27 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -1.80 Total: -58.98 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 72.26 SS G_CDS: -0.47 Total: 71.79 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.41 -8.89 -42.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.832 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds