Wall clock time and date at job start Mon Mar 30 2020 04:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00048 * 2 1 4 4 H 1.48499 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47158 * 300.00195 * 3 2 1 6 6 H 1.48500 * 109.47578 * 60.00029 * 3 2 1 7 7 C 1.37873 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00263 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00236 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40099 * 66.45810 * 9 7 2 11 11 O 1.42103 * 106.40026 * 293.54086 * 9 7 2 12 12 N 1.65598 * 107.22144 * 179.97438 * 9 7 2 13 13 C 1.46924 * 120.54357 * 262.05224 * 12 9 7 14 14 C 1.53424 * 107.79418 * 224.77381 * 13 12 9 15 15 C 1.52852 * 108.86377 * 296.83753 * 14 13 12 16 16 C 1.50589 * 110.49060 * 51.32054 * 15 14 13 17 17 C 1.38501 * 118.93212 * 159.47858 * 16 15 14 18 18 C 1.38131 * 120.30564 * 179.59115 * 17 16 15 19 19 C 1.38306 * 120.16023 * 0.27380 * 18 17 16 20 20 C 1.38026 * 119.91161 * 359.53420 * 19 18 17 21 21 C 1.38608 * 121.50438 * 339.23162 * 16 15 14 22 22 H 0.97001 * 119.99679 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.79328 * 344.35407 * 13 12 9 24 24 H 1.09001 * 109.79457 * 105.14213 * 13 12 9 25 25 H 1.08993 * 109.57422 * 56.65536 * 14 13 12 26 26 H 1.09003 * 109.57072 * 176.90200 * 14 13 12 27 27 H 1.08998 * 109.26837 * 291.05917 * 15 14 13 28 28 H 1.08995 * 109.27122 * 171.58690 * 15 14 13 29 29 H 1.07995 * 119.84956 * 359.57134 * 17 16 15 30 30 H 1.07998 * 119.91573 * 179.97438 * 18 17 16 31 31 H 1.08002 * 120.04258 * 179.80092 * 19 18 17 32 32 H 1.07995 * 119.98344 * 180.29077 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0019 10 8 0.4509 -2.7961 -1.2475 11 8 0.4519 -2.7944 1.2520 12 7 2.2482 -3.9355 0.0016 13 6 2.6259 -4.6029 -1.2516 14 6 2.6592 -6.1137 -0.9867 15 6 3.7429 -6.4100 0.0496 16 6 3.5721 -5.5278 1.2580 17 6 4.1528 -5.9117 2.4554 18 6 4.0212 -5.1197 3.5794 19 6 3.3029 -3.9394 3.5176 20 6 2.7243 -3.5473 2.3273 21 6 2.8540 -4.3439 1.1948 22 1 -0.4850 0.8401 0.0004 23 1 1.8908 -4.3796 -2.0248 24 1 3.6110 -4.2612 -1.5695 25 1 1.6911 -6.4390 -0.6059 26 1 2.8833 -6.6421 -1.9134 27 1 4.7226 -6.2288 -0.3925 28 1 3.6738 -7.4543 0.3539 29 1 4.7108 -6.8347 2.5106 30 1 4.4762 -5.4253 4.5099 31 1 3.1985 -3.3232 4.3984 32 1 2.1672 -2.6235 2.2766 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:05 Heat of formation + Delta-G solvation = -91.912008 kcal Electronic energy + Delta-G solvation = -18823.046332 eV Core-core repulsion = 15873.443731 eV Total energy + Delta-G solvation = -2949.602601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00545 -37.90272 -37.20010 -36.34471 -35.28790 -34.47594 -31.31972 -30.45755 -28.39145 -26.05973 -24.13601 -23.70141 -20.96815 -20.70760 -19.50420 -18.45033 -17.72501 -17.17374 -16.86447 -16.19698 -15.96312 -15.73109 -14.99301 -14.87157 -14.41646 -14.22791 -14.07750 -14.01719 -13.58733 -13.35377 -13.09098 -12.79739 -12.70869 -12.57170 -12.35134 -12.23462 -12.13106 -11.63355 -11.42821 -11.33604 -11.26184 -10.90122 -9.56224 -8.94646 -8.71417 -7.59997 0.04195 0.52451 0.60930 1.27848 1.28538 1.47357 2.13369 2.48126 2.55201 2.92742 3.58076 3.73043 3.86148 3.99126 4.08773 4.18616 4.25826 4.38234 4.43965 4.60150 4.71263 4.82616 4.86074 4.90710 5.05197 5.14957 5.20497 5.24538 5.33548 5.49856 5.71062 5.74016 5.83031 5.90842 6.30014 6.67103 8.11988 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.008326 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.508238 B = 3362.274951 C = 3946.152440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.992 3.008 4 H -0.250 1.250 5 H -0.254 1.254 6 H -0.255 1.255 7 C -1.033 5.033 8 H 0.115 0.885 9 S 2.707 3.293 10 O -1.030 7.030 11 O -1.025 7.025 12 N -0.949 5.949 13 C 0.092 3.908 14 C -0.128 4.128 15 C -0.068 4.068 16 C -0.135 4.135 17 C -0.090 4.090 18 C -0.148 4.148 19 C -0.101 4.101 20 C -0.202 4.202 21 C 0.162 3.838 22 H 0.302 0.698 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.053 0.947 26 H 0.119 0.881 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.136 0.864 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.643 -10.619 2.067 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.810 3.190 4 H -0.173 1.173 5 H -0.178 1.178 6 H -0.179 1.179 7 C -1.167 5.167 8 H 0.133 0.867 9 S 2.811 3.189 10 O -1.020 7.020 11 O -1.015 7.015 12 N -0.773 5.773 13 C -0.032 4.032 14 C -0.167 4.167 15 C -0.105 4.105 16 C -0.139 4.139 17 C -0.108 4.108 18 C -0.167 4.167 19 C -0.120 4.120 20 C -0.224 4.224 21 C 0.065 3.935 22 H 0.112 0.888 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.137 0.863 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.181 0.819 30 H 0.174 0.826 31 H 0.154 0.846 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.442 -10.682 1.933 15.062 hybrid contribution -0.008 1.652 -0.080 1.654 sum 10.434 -9.031 1.853 13.923 Atomic orbital electron populations 1.69982 1.08718 1.32566 1.40957 1.26037 0.95438 1.05295 0.87339 0.85076 0.79357 0.74811 0.79797 1.17261 1.17803 1.17926 1.30776 1.06788 1.11934 1.67228 0.86725 1.00511 0.72634 0.73953 0.71775 1.93294 1.74004 1.88148 1.46562 1.93326 1.74427 1.87871 1.45915 1.55919 1.57275 1.51762 1.12297 1.22012 1.02324 0.94883 0.83956 1.21881 0.99870 0.93251 1.01701 1.20447 0.99554 0.99057 0.91451 1.19917 1.01496 0.93894 0.98634 1.21317 0.98299 1.00492 0.90698 1.21370 1.00661 0.94593 1.00099 1.21151 0.96701 0.97940 0.96171 1.21591 1.04515 1.01566 0.94696 1.17719 0.95985 0.94947 0.84819 0.88801 0.89551 0.89284 0.92766 0.86282 0.88584 0.87537 0.81866 0.82578 0.84584 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.78 13.19 21.45 0.28 -53.50 16 2 C 0.07 4.09 5.46 84.65 0.46 4.55 16 3 Si 0.99 41.96 29.54 68.60 2.03 43.99 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 7 C -1.03 -59.10 9.22 67.73 0.62 -58.48 16 8 H 0.11 6.10 7.81 -2.91 -0.02 6.08 16 9 S 2.71 154.11 4.40 -56.49 -0.25 153.86 16 10 O -1.03 -63.15 16.45 -128.00 -2.11 -65.26 16 11 O -1.03 -63.84 14.97 -128.00 -1.92 -65.75 16 12 N -0.95 -42.57 3.27 -337.70 -1.10 -43.67 16 13 C 0.09 3.22 6.49 86.44 0.56 3.79 16 14 C -0.13 -3.31 6.11 30.69 0.19 -3.12 16 15 C -0.07 -1.52 5.78 29.76 0.17 -1.35 16 16 C -0.13 -4.15 5.76 -19.75 -0.11 -4.27 16 17 C -0.09 -2.21 9.66 22.31 0.22 -1.99 16 18 C -0.15 -3.85 10.04 22.26 0.22 -3.62 16 19 C -0.10 -3.43 10.05 22.24 0.22 -3.21 16 20 C -0.20 -8.88 8.57 22.42 0.19 -8.69 16 21 C 0.16 6.70 6.26 38.14 0.24 6.94 16 22 H 0.30 16.19 8.31 -92.71 -0.77 15.42 16 23 H 0.09 3.25 6.80 -2.39 -0.02 3.24 16 24 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.11 1.72 8.12 -2.39 -0.02 1.70 16 29 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 31 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 32 H 0.11 5.80 5.07 -2.91 -0.01 5.78 16 Total: -1.00 -79.32 279.39 1.05 -78.27 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 1.13 Total: 21.50 kcal Atomic # 6 Polarization: -72.43 SS G_CDS: 2.99 Total: -69.45 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -0.82 Total: -97.17 kcal Atomic # 8 Polarization: -126.99 SS G_CDS: -4.02 Total: -131.01 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: 154.11 SS G_CDS: -0.25 Total: 153.86 kcal Total: -79.32 1.05 -78.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.638 kcal (2) G-P(sol) polarization free energy of solvation -79.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds