Wall clock time and date at job start Mon Mar 30 2020 05:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48502 * 109.47258 * 270.00085 * 3 2 1 5 5 H 1.48503 * 109.46777 * 29.99963 * 3 2 1 6 6 H 1.48499 * 109.47007 * 150.00094 * 3 2 1 7 7 C 1.37882 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99576 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00076 * 81.19764 * 10 9 7 12 12 O 1.21650 * 119.99914 * 182.71963 * 11 10 9 13 13 C 1.47164 * 120.00099 * 2.72410 * 11 10 9 14 14 C 1.35050 * 122.48183 * 169.68964 * 13 11 10 15 15 S 1.76177 * 108.26108 * 179.97438 * 14 13 11 16 16 C 1.76050 * 90.17411 * 0.02562 * 15 14 13 17 17 N 1.38472 * 125.18396 * 179.97438 * 16 15 14 18 18 N 1.29435 * 109.62902 * 0.02562 * 16 15 14 19 19 C 1.46499 * 119.99712 * 261.20339 * 10 9 7 20 20 C 1.53007 * 117.49580 * 196.58105 * 19 10 9 21 21 C 1.53002 * 117.49692 * 127.92413 * 19 10 9 22 22 H 0.96996 * 119.99905 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47159 * 60.00535 * 9 7 2 24 24 H 1.08998 * 109.47572 * 300.00371 * 9 7 2 25 25 H 1.08005 * 125.86589 * 0.02562 * 14 13 11 26 26 H 0.97002 * 119.99768 * 0.02562 * 17 16 15 27 27 H 0.96998 * 119.99767 * 180.02562 * 17 16 15 28 28 H 1.08996 * 115.55197 * 342.25478 * 19 10 9 29 29 H 1.08996 * 117.49610 * 0.02562 * 20 19 10 30 30 H 1.09002 * 117.49509 * 145.01984 * 20 19 10 31 31 H 1.09005 * 117.49812 * 214.97713 * 21 19 10 32 32 H 1.08996 * 117.50189 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.7767 -4.0088 1.1529 12 8 3.6042 -4.9006 1.1458 13 6 2.4021 -3.3628 2.4209 14 6 2.7850 -3.8465 3.6222 15 16 2.1353 -2.7916 4.8748 16 6 1.3928 -1.7769 3.6425 17 7 0.6399 -0.6416 3.8910 18 7 1.6570 -2.2545 2.4688 19 6 2.5316 -4.2955 -1.2544 20 6 3.2066 -5.6651 -1.1570 21 6 4.0120 -4.4449 -1.6105 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 3.3869 -4.7281 3.7867 26 1 0.4880 -0.3506 4.8038 27 1 0.2645 -0.1374 3.1524 28 1 1.8303 -4.1371 -2.0736 29 1 3.4059 -6.0582 -0.1601 30 1 2.9497 -6.4076 -1.9125 31 1 4.2847 -4.3852 -2.6643 32 1 4.7416 -4.0348 -0.9123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055188077.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:55 Heat of formation + Delta-G solvation = 71.867715 kcal Electronic energy + Delta-G solvation = -18647.461386 eV Core-core repulsion = 15737.253557 eV Total energy + Delta-G solvation = -2910.207829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.96359 -38.23475 -35.74371 -34.23072 -33.65514 -31.94707 -28.73357 -26.86325 -25.02546 -22.83034 -21.96599 -21.78778 -20.45394 -19.09391 -17.34008 -16.48360 -16.03644 -15.88262 -15.62166 -14.75505 -14.52290 -14.35186 -14.30280 -13.53055 -12.98025 -12.63039 -12.33795 -12.14437 -11.61494 -11.39628 -11.04212 -10.86212 -10.70706 -10.59980 -10.35368 -10.13497 -9.70204 -9.45078 -8.90485 -8.79977 -8.53443 -8.20917 -7.58813 -7.28367 -5.97774 -3.95317 1.26147 1.52976 2.06449 2.89722 3.26840 3.34272 3.40468 3.78123 4.00903 4.09812 4.45492 4.64324 5.15016 5.37365 5.46706 5.56262 5.68968 5.76419 5.98452 6.21622 6.24153 6.39695 6.57759 6.85079 7.02273 7.32966 7.56841 7.66337 7.84466 7.94195 8.31007 8.33584 8.53269 8.96283 9.06684 9.63031 11.10172 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.011437 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.900924 B = 2447.693330 C = 4133.873416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.481 4.481 8 H 0.050 0.950 9 C 0.237 3.763 10 N -0.549 5.549 11 C 0.587 3.413 12 O -0.562 6.562 13 C 0.076 3.924 14 C -0.225 4.225 15 S 0.001 5.999 16 C 0.350 3.650 17 N -0.816 5.816 18 N -0.448 5.448 19 C 0.084 3.916 20 C -0.204 4.204 21 C -0.188 4.188 22 H 0.257 0.743 23 H 0.026 0.974 24 H 0.074 0.926 25 H 0.179 0.821 26 H 0.406 0.594 27 H 0.422 0.578 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 -4.201 6.682 7.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.521 4.521 8 H 0.068 0.932 9 C 0.118 3.882 10 N -0.275 5.275 11 C 0.374 3.626 12 O -0.445 6.445 13 C -0.057 4.057 14 C -0.368 4.368 15 S 0.246 5.754 16 C -0.026 4.026 17 N -0.369 5.369 18 N -0.171 5.171 19 C -0.021 4.021 20 C -0.241 4.241 21 C -0.227 4.227 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.091 0.909 25 H 0.196 0.804 26 H 0.236 0.764 27 H 0.257 0.743 28 H 0.142 0.858 29 H 0.155 0.845 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.823 -4.221 7.254 8.433 hybrid contribution 0.525 1.265 -0.728 1.551 sum 1.347 -2.956 6.526 7.290 Atomic orbital electron populations 1.69948 1.05499 1.26090 1.52298 1.24688 0.94611 0.98066 0.95952 0.86770 0.80018 0.84130 0.78070 1.20955 1.21385 1.20320 1.21200 0.92739 0.90316 1.47808 0.93199 1.19909 0.87451 0.81746 0.99119 1.47642 1.42948 1.32906 1.04040 1.17247 0.80944 0.81770 0.82677 1.90533 1.34965 1.32319 1.86682 1.20073 0.98491 0.92936 0.94156 1.26376 1.11126 1.06607 0.92672 1.84639 1.53121 1.24124 1.13505 1.24625 0.95487 0.93163 0.89310 1.41522 1.57490 1.26403 1.11502 1.67549 1.18914 1.11895 1.18770 1.21602 0.95189 0.96624 0.88703 1.23901 1.03894 0.91098 1.05214 1.23124 0.95608 1.03094 1.00842 0.93302 0.95574 0.90916 0.80405 0.76425 0.74347 0.85807 0.84465 0.90162 0.89379 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.86 13.29 55.43 0.74 -23.12 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.48 -12.73 7.69 -34.44 -0.26 -12.99 16 8 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 9 C 0.24 5.84 4.83 -5.19 -0.03 5.81 16 10 N -0.55 -12.30 2.85 -168.82 -0.48 -12.78 16 11 C 0.59 13.07 7.34 -12.64 -0.09 12.98 16 12 O -0.56 -12.51 12.47 5.23 0.07 -12.44 16 13 C 0.08 1.59 6.41 -84.59 -0.54 1.05 16 14 C -0.22 -3.95 10.84 29.60 0.32 -3.63 16 15 S 0.00 0.01 23.41 -107.50 -2.52 -2.51 16 16 C 0.35 6.27 8.82 -88.02 -0.78 5.50 16 17 N -0.82 -12.26 9.07 30.70 0.28 -11.98 16 18 N -0.45 -9.59 5.57 -10.59 -0.06 -9.65 16 19 C 0.08 1.65 6.61 -67.93 -0.45 1.20 16 20 C -0.20 -3.58 9.63 -26.69 -0.26 -3.83 16 21 C -0.19 -3.42 9.88 -26.69 -0.26 -3.68 16 22 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 23 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 24 H 0.07 1.88 5.61 -51.93 -0.29 1.59 16 25 H 0.18 2.82 8.03 -52.48 -0.42 2.40 16 26 H 0.41 4.40 8.95 -40.82 -0.37 4.03 16 27 H 0.42 7.13 8.95 -40.82 -0.37 6.77 16 28 H 0.12 2.23 8.02 -51.93 -0.42 1.82 16 29 H 0.14 2.69 5.11 -52.56 -0.27 2.42 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.09 1.88 7.68 -51.93 -0.40 1.48 16 LS Contribution 287.71 15.07 4.34 4.34 Total: -1.00 -29.07 287.71 -8.44 -37.51 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -3.33 Total: 10.80 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.45 Total: 4.04 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.47 Total: -57.53 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.52 Total: -2.51 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.07 -8.44 -37.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055188077.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.381 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds