Wall clock time and date at job start Mon Mar 30 2020 05:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48502 * 109.47258 * 270.00085 * 3 2 1 5 5 H 1.48503 * 109.46777 * 29.99963 * 3 2 1 6 6 H 1.48499 * 109.47007 * 150.00094 * 3 2 1 7 7 C 1.37882 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99576 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00076 * 81.19764 * 10 9 7 12 12 O 1.21650 * 119.99914 * 182.71963 * 11 10 9 13 13 C 1.47164 * 120.00099 * 2.72410 * 11 10 9 14 14 C 1.35050 * 122.48183 * 169.68964 * 13 11 10 15 15 S 1.76177 * 108.26108 * 179.97438 * 14 13 11 16 16 C 1.76050 * 90.17411 * 0.02562 * 15 14 13 17 17 N 1.38472 * 125.18396 * 179.97438 * 16 15 14 18 18 N 1.29435 * 109.62902 * 0.02562 * 16 15 14 19 19 C 1.46499 * 119.99712 * 261.20339 * 10 9 7 20 20 C 1.53007 * 117.49580 * 196.58105 * 19 10 9 21 21 C 1.53002 * 117.49692 * 127.92413 * 19 10 9 22 22 H 0.96996 * 119.99905 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47159 * 60.00535 * 9 7 2 24 24 H 1.08998 * 109.47572 * 300.00371 * 9 7 2 25 25 H 1.08005 * 125.86589 * 0.02562 * 14 13 11 26 26 H 0.97002 * 119.99768 * 0.02562 * 17 16 15 27 27 H 0.96998 * 119.99767 * 180.02562 * 17 16 15 28 28 H 1.08996 * 115.55197 * 342.25478 * 19 10 9 29 29 H 1.08996 * 117.49610 * 0.02562 * 20 19 10 30 30 H 1.09002 * 117.49509 * 145.01984 * 20 19 10 31 31 H 1.09005 * 117.49812 * 214.97713 * 21 19 10 32 32 H 1.08996 * 117.50189 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.7767 -4.0088 1.1529 12 8 3.6042 -4.9006 1.1458 13 6 2.4021 -3.3628 2.4209 14 6 2.7850 -3.8465 3.6222 15 16 2.1353 -2.7916 4.8748 16 6 1.3928 -1.7769 3.6425 17 7 0.6399 -0.6416 3.8910 18 7 1.6570 -2.2545 2.4688 19 6 2.5316 -4.2955 -1.2544 20 6 3.2066 -5.6651 -1.1570 21 6 4.0120 -4.4449 -1.6105 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 3.3869 -4.7281 3.7867 26 1 0.4880 -0.3506 4.8038 27 1 0.2645 -0.1374 3.1524 28 1 1.8303 -4.1371 -2.0736 29 1 3.4059 -6.0582 -0.1601 30 1 2.9497 -6.4076 -1.9125 31 1 4.2847 -4.3852 -2.6643 32 1 4.7416 -4.0348 -0.9123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055188077.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:55 Heat of formation + Delta-G solvation = 53.800297 kcal Electronic energy + Delta-G solvation = -18648.244848 eV Core-core repulsion = 15737.253557 eV Total energy + Delta-G solvation = -2910.991291 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.53887 -39.70399 -37.32794 -35.81270 -35.17523 -33.82770 -30.17032 -28.79489 -26.51455 -24.71413 -23.47396 -23.22425 -21.93935 -20.50313 -18.91154 -18.40429 -17.57299 -17.44577 -16.90005 -16.31140 -16.28167 -16.04394 -15.75456 -15.04162 -14.58965 -14.15364 -14.01042 -13.86418 -13.43357 -12.96839 -12.75976 -12.65382 -12.32050 -12.16040 -12.06994 -11.74266 -11.34465 -11.19090 -10.52809 -10.46186 -10.06438 -9.81705 -9.19930 -8.69735 -7.98179 -6.01790 -0.15683 0.20982 0.68717 1.35739 1.38971 1.42719 1.50799 2.28384 2.50002 2.52354 2.70866 3.14275 3.32424 3.66737 3.98797 4.13436 4.25111 4.37586 4.52864 4.73904 4.84356 4.94726 5.04879 5.18338 5.43608 5.58188 5.87835 6.04841 6.20096 6.31792 6.40657 6.56649 6.97569 7.17987 7.40676 7.59174 9.08703 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.011437 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.900924 B = 2447.693330 C = 4133.873416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.040 3.960 3 Si 0.932 3.068 4 H -0.285 1.285 5 H -0.273 1.273 6 H -0.289 1.289 7 C -0.485 4.485 8 H 0.024 0.976 9 C 0.256 3.744 10 N -0.558 5.558 11 C 0.578 3.422 12 O -0.572 6.572 13 C 0.038 3.962 14 C -0.224 4.224 15 S 0.101 5.899 16 C 0.327 3.673 17 N -0.805 5.805 18 N -0.494 5.494 19 C 0.055 3.945 20 C -0.183 4.183 21 C -0.184 4.184 22 H 0.261 0.739 23 H 0.007 0.993 24 H 0.063 0.937 25 H 0.193 0.807 26 H 0.425 0.575 27 H 0.413 0.587 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -4.147 7.726 8.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.760 3.240 4 H -0.211 1.211 5 H -0.198 1.198 6 H -0.215 1.215 7 C -0.524 4.524 8 H 0.043 0.957 9 C 0.136 3.864 10 N -0.284 5.284 11 C 0.365 3.635 12 O -0.456 6.456 13 C -0.094 4.094 14 C -0.368 4.368 15 S 0.347 5.653 16 C -0.049 4.049 17 N -0.359 5.359 18 N -0.219 5.219 19 C -0.050 4.050 20 C -0.220 4.220 21 C -0.222 4.222 22 H 0.071 0.929 23 H 0.025 0.975 24 H 0.081 0.919 25 H 0.210 0.790 26 H 0.259 0.741 27 H 0.246 0.754 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.981 -4.158 8.338 9.368 hybrid contribution 0.495 1.208 -0.931 1.603 sum 1.476 -2.951 7.407 8.108 Atomic orbital electron populations 1.70006 1.06172 1.26847 1.52369 1.25112 0.95215 1.00028 0.95568 0.86003 0.78623 0.81675 0.77743 1.21111 1.19829 1.21527 1.21105 0.91386 0.91573 1.48381 0.95735 1.19499 0.87389 0.81986 0.97526 1.47612 1.42824 1.32727 1.05280 1.17591 0.80800 0.81794 0.83289 1.90517 1.35273 1.32733 1.87060 1.20002 1.00799 0.94128 0.94493 1.26774 1.09849 1.07067 0.93113 1.84230 1.50622 1.20935 1.09481 1.24875 0.95831 0.93963 0.90237 1.41532 1.56554 1.25406 1.12369 1.67416 1.20224 1.12801 1.21422 1.21939 0.96390 0.98331 0.88328 1.23840 1.02170 0.90800 1.05159 1.23130 0.94011 1.03232 1.01851 0.92938 0.97539 0.91920 0.79002 0.74147 0.75412 0.84702 0.86416 0.86683 0.86464 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.59 13.29 21.45 0.28 -48.31 16 2 C 0.04 2.08 5.46 84.66 0.46 2.54 16 3 Si 0.93 42.72 29.54 68.60 2.03 44.75 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.49 -26.25 7.69 25.60 0.20 -26.05 16 8 H 0.02 1.42 7.81 -2.91 -0.02 1.40 16 9 C 0.26 13.02 4.83 85.63 0.41 13.43 16 10 N -0.56 -25.69 2.85 -806.27 -2.30 -27.99 16 11 C 0.58 26.31 7.34 86.59 0.64 26.95 16 12 O -0.57 -25.87 12.47 -4.19 -0.05 -25.92 16 13 C 0.04 1.60 6.41 40.48 0.26 1.86 16 14 C -0.22 -7.61 10.84 67.09 0.73 -6.88 16 15 S 0.10 2.74 23.41 -56.49 -1.32 1.42 16 16 C 0.33 11.37 8.82 179.44 1.58 12.96 16 17 N -0.80 -23.17 9.07 -56.78 -0.52 -23.68 16 18 N -0.49 -21.29 5.57 -187.41 -1.04 -22.34 16 19 C 0.05 2.15 6.61 44.99 0.30 2.45 16 20 C -0.18 -6.23 9.63 30.62 0.30 -5.93 16 21 C -0.18 -6.60 9.88 30.62 0.30 -6.30 16 22 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 23 H 0.01 0.35 7.92 -2.39 -0.02 0.34 16 24 H 0.06 3.35 5.61 -2.39 -0.01 3.34 16 25 H 0.19 5.80 8.03 -2.91 -0.02 5.77 16 26 H 0.43 8.30 8.95 -92.71 -0.83 7.47 16 27 H 0.41 13.73 8.95 -92.71 -0.83 12.90 16 28 H 0.14 4.86 8.02 -2.39 -0.02 4.84 16 29 H 0.12 4.59 5.11 -12.28 -0.06 4.52 16 30 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.12 3.46 8.14 -2.38 -0.02 3.44 16 32 H 0.07 2.73 7.68 -2.39 -0.02 2.72 16 Total: -1.00 -63.01 287.71 1.72 -61.29 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.53 Total: 25.76 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 5.17 Total: 15.02 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -3.57 Total: -122.32 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.32 Total: 1.42 kcal Total: -63.01 1.72 -61.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055188077.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.089 kcal (2) G-P(sol) polarization free energy of solvation -63.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds