Wall clock time and date at job start Mon Mar 30 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.44352 * 2 1 4 4 O 1.43008 * 109.44638 * 119.93263 * 2 1 3 5 5 C 1.35962 * 116.68787 * 166.34968 * 4 2 1 6 6 C 1.38405 * 120.65714 * 147.20476 * 5 4 2 7 7 C 1.38296 * 119.89170 * 180.02562 * 6 5 4 8 8 C 1.38435 * 120.27049 * 359.97438 * 7 6 5 9 9 Cl 1.73602 * 119.90528 * 179.97438 * 8 7 6 10 10 C 1.38318 * 120.19492 * 359.97438 * 8 7 6 11 11 C 1.38631 * 119.79167 * 0.02562 * 10 8 7 12 12 N 1.39944 * 120.73729 * 180.02562 * 11 10 8 13 13 C 1.37104 * 120.48957 * 15.41874 * 12 11 10 14 14 H 1.07999 * 119.99774 * 221.96349 * 13 12 11 15 15 C 1.38871 * 119.99585 * 41.96855 * 13 12 11 16 16 N 1.31426 * 120.00664 * 15.51397 * 15 13 12 17 17 Si 1.86805 * 119.99551 * 195.51989 * 15 13 12 18 18 H 1.48501 * 109.47085 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47259 * 299.99711 * 17 15 13 20 20 H 1.48501 * 109.47071 * 59.99984 * 17 15 13 21 21 C 1.35073 * 119.01846 * 195.69586 * 12 11 10 22 22 O 1.21291 * 120.12563 * 181.39992 * 21 12 11 23 23 H 1.09004 * 109.47141 * 300.06256 * 1 2 3 24 24 H 1.08999 * 109.47244 * 60.06467 * 1 2 3 25 25 H 1.09004 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.05291 * 0.06851 * 6 5 4 27 27 H 1.07998 * 119.86278 * 180.02562 * 7 6 5 28 28 H 1.08002 * 120.10166 * 179.97438 * 10 8 7 29 29 H 0.96999 * 120.00607 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 8 2.0061 -0.6729 1.1686 5 6 3.3225 -1.0125 1.1840 6 6 4.0351 -1.0219 2.3704 7 6 5.3737 -1.3694 2.3677 8 6 6.0042 -1.7087 1.1829 9 17 7.6850 -2.1428 1.1903 10 6 5.2988 -1.7029 -0.0069 11 6 3.9568 -1.3553 -0.0103 12 7 3.2241 -1.3434 -1.2026 13 6 3.7100 -1.9647 -2.3240 14 1 3.6189 -1.4870 -3.2883 15 6 4.3191 -3.2083 -2.2198 16 7 4.1668 -3.9255 -1.1290 17 14 5.3551 -3.8619 -3.6302 18 1 5.8909 -5.1998 -3.2722 19 1 4.5158 -3.9746 -4.8501 20 1 6.4825 -2.9308 -3.8892 21 6 2.0337 -0.7058 -1.2337 22 8 1.3702 -0.7044 -2.2491 23 1 -0.3634 0.5148 0.8895 24 1 -0.3634 0.5128 -0.8905 25 1 -0.3634 -1.0277 0.0005 26 1 3.5464 -0.7588 3.2970 27 1 5.9292 -1.3769 3.2938 28 1 5.7923 -1.9674 -0.9305 29 1 4.5926 -4.7940 -1.0561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057788497.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:48 Heat of formation + Delta-G solvation = -43.455986 kcal Electronic energy + Delta-G solvation = -18480.913935 eV Core-core repulsion = 15395.535744 eV Total energy + Delta-G solvation = -3085.378192 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.69457 -37.93554 -37.12992 -35.92756 -34.84821 -32.09646 -31.43720 -29.49112 -28.32666 -26.07182 -23.27997 -22.54651 -21.88164 -18.92723 -18.46012 -17.71365 -16.42285 -15.88035 -15.23063 -14.98917 -14.20184 -13.95714 -13.93283 -13.45319 -13.27934 -12.81877 -12.59851 -12.16006 -11.97776 -11.76377 -11.61970 -11.40020 -11.11296 -10.87986 -10.75565 -10.56462 -10.30202 -10.21001 -9.52734 -9.09350 -8.74872 -7.78543 -7.05567 -6.49601 -4.38990 1.73668 1.95977 2.71084 3.04095 3.13103 3.15349 3.30736 3.67500 3.98825 4.32069 4.37818 4.81536 5.00190 5.31750 5.36978 5.42241 5.71046 5.77151 6.01279 6.06280 6.16227 6.38796 6.44778 6.54117 6.90735 6.95689 7.18938 7.29832 7.61625 7.97885 8.09540 8.71748 8.92979 9.41231 10.44044 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.011535 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.161921 B = 2426.814495 C = 4061.760214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.076 3.924 3 H 0.084 0.916 4 O -0.308 6.308 5 C 0.057 3.943 6 C -0.111 4.111 7 C -0.136 4.136 8 C -0.031 4.031 9 Cl -0.092 7.092 10 C -0.076 4.076 11 C 0.157 3.843 12 N -0.379 5.379 13 C -0.345 4.345 14 H 0.101 0.899 15 C 0.048 3.952 16 N -0.840 5.840 17 Si 0.920 3.080 18 H -0.278 1.278 19 H -0.268 1.268 20 H -0.266 1.266 21 C 0.447 3.553 22 O -0.530 6.530 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.140 0.860 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 5.036 6.268 8.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.016 3.984 3 H 0.102 0.898 4 O -0.223 6.223 5 C 0.011 3.989 6 C -0.131 4.131 7 C -0.157 4.157 8 C -0.059 4.059 9 Cl -0.064 7.064 10 C -0.098 4.098 11 C 0.058 3.942 12 N -0.087 5.087 13 C -0.471 4.471 14 H 0.118 0.882 15 C -0.161 4.161 16 N -0.471 5.471 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.192 1.192 20 H -0.191 1.191 21 C 0.237 3.763 22 O -0.409 6.409 23 H 0.087 0.913 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.157 0.843 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.634 4.746 5.843 7.703 hybrid contribution 0.790 -0.699 -0.756 1.298 sum 2.424 4.047 5.087 6.938 Atomic orbital electron populations 1.21593 0.90206 1.03853 1.02791 1.22557 0.97217 0.95741 0.82840 0.89843 1.86093 1.22029 1.74511 1.39688 1.18631 0.83442 1.03707 0.93127 1.20057 0.92627 1.04336 0.96040 1.20429 0.94009 1.04776 0.96457 1.20507 0.84629 1.05695 0.95030 1.98304 1.17042 1.92064 1.98953 1.20377 0.91888 1.00229 0.97323 1.18057 0.91527 0.98346 0.86287 1.41285 1.14223 1.44309 1.08932 1.19396 1.39806 1.00924 0.87002 0.88169 1.25515 0.97678 0.94950 0.97993 1.69987 1.38391 1.11297 1.27452 0.86083 0.80088 0.78371 0.80973 1.20313 1.19250 1.19091 1.21313 0.81351 0.83522 0.90158 1.90571 1.55292 1.61558 1.33524 0.91290 0.89634 0.91380 0.85053 0.85530 0.84259 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.15 37.16 0.34 -1.68 15 2 C 0.08 1.46 3.68 -27.84 -0.10 1.36 15 3 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 4 O -0.31 -6.23 10.09 -19.62 -0.20 -6.43 15 5 C 0.06 1.21 6.44 -39.05 -0.25 0.96 15 6 C -0.11 -1.96 10.00 -39.50 -0.39 -2.36 15 7 C -0.14 -2.33 9.82 -39.49 -0.39 -2.72 15 8 C -0.03 -0.60 6.32 -39.48 -0.25 -0.85 15 9 Cl -0.09 -1.57 28.95 -51.86 -1.50 -3.07 15 10 C -0.08 -1.69 7.48 -39.41 -0.29 -1.99 15 11 C 0.16 3.70 5.47 -83.54 -0.46 3.24 15 12 N -0.38 -9.74 2.75 -58.78 -0.16 -9.90 15 13 C -0.35 -9.26 8.32 -14.96 -0.12 -9.39 15 14 H 0.10 2.72 7.84 -52.49 -0.41 2.31 15 15 C 0.05 1.23 3.51 -17.49 -0.06 1.17 15 16 N -0.84 -22.30 11.45 55.49 0.64 -21.67 15 17 Si 0.92 19.82 29.58 -169.99 -5.03 14.79 15 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 19 H -0.27 -5.79 7.11 56.52 0.40 -5.38 15 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 21 C 0.45 10.87 7.33 -10.81 -0.08 10.79 15 22 O -0.53 -14.00 16.15 5.55 0.09 -13.91 15 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.08 1.30 7.85 -51.93 -0.41 0.89 15 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 26 H 0.13 1.91 8.06 -52.48 -0.42 1.49 15 27 H 0.13 1.77 8.06 -52.49 -0.42 1.35 15 28 H 0.14 3.30 6.11 -52.49 -0.32 2.98 15 29 H 0.28 6.99 8.31 -40.82 -0.34 6.65 15 LS Contribution 268.48 15.07 4.05 4.05 Total: -1.00 -29.21 268.48 -6.57 -35.78 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -2.39 Total: 1.81 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.06 Total: -1.45 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.47 Total: -31.57 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.11 Total: -20.34 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.50 Total: -3.07 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.21 -6.57 -35.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057788497.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.676 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds