Wall clock time and date at job start Mon Mar 30 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.44352 * 2 1 4 4 O 1.43008 * 109.44638 * 119.93263 * 2 1 3 5 5 C 1.35962 * 116.68787 * 166.34968 * 4 2 1 6 6 C 1.38405 * 120.65714 * 147.20476 * 5 4 2 7 7 C 1.38296 * 119.89170 * 180.02562 * 6 5 4 8 8 C 1.38435 * 120.27049 * 359.97438 * 7 6 5 9 9 Cl 1.73602 * 119.90528 * 179.97438 * 8 7 6 10 10 C 1.38318 * 120.19492 * 359.97438 * 8 7 6 11 11 C 1.38631 * 119.79167 * 0.02562 * 10 8 7 12 12 N 1.39944 * 120.73729 * 180.02562 * 11 10 8 13 13 C 1.37104 * 120.48957 * 15.41874 * 12 11 10 14 14 H 1.07999 * 119.99774 * 221.96349 * 13 12 11 15 15 C 1.38871 * 119.99585 * 41.96855 * 13 12 11 16 16 N 1.31426 * 120.00664 * 15.51397 * 15 13 12 17 17 Si 1.86805 * 119.99551 * 195.51989 * 15 13 12 18 18 H 1.48501 * 109.47085 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47259 * 299.99711 * 17 15 13 20 20 H 1.48501 * 109.47071 * 59.99984 * 17 15 13 21 21 C 1.35073 * 119.01846 * 195.69586 * 12 11 10 22 22 O 1.21291 * 120.12563 * 181.39992 * 21 12 11 23 23 H 1.09004 * 109.47141 * 300.06256 * 1 2 3 24 24 H 1.08999 * 109.47244 * 60.06467 * 1 2 3 25 25 H 1.09004 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.05291 * 0.06851 * 6 5 4 27 27 H 1.07998 * 119.86278 * 180.02562 * 7 6 5 28 28 H 1.08002 * 120.10166 * 179.97438 * 10 8 7 29 29 H 0.96999 * 120.00607 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 8 2.0061 -0.6729 1.1686 5 6 3.3225 -1.0125 1.1840 6 6 4.0351 -1.0219 2.3704 7 6 5.3737 -1.3694 2.3677 8 6 6.0042 -1.7087 1.1829 9 17 7.6850 -2.1428 1.1903 10 6 5.2988 -1.7029 -0.0069 11 6 3.9568 -1.3553 -0.0103 12 7 3.2241 -1.3434 -1.2026 13 6 3.7100 -1.9647 -2.3240 14 1 3.6189 -1.4870 -3.2883 15 6 4.3191 -3.2083 -2.2198 16 7 4.1668 -3.9255 -1.1290 17 14 5.3551 -3.8619 -3.6302 18 1 5.8909 -5.1998 -3.2722 19 1 4.5158 -3.9746 -4.8501 20 1 6.4825 -2.9308 -3.8892 21 6 2.0337 -0.7058 -1.2337 22 8 1.3702 -0.7044 -2.2491 23 1 -0.3634 0.5148 0.8895 24 1 -0.3634 0.5128 -0.8905 25 1 -0.3634 -1.0277 0.0005 26 1 3.5464 -0.7588 3.2970 27 1 5.9292 -1.3769 3.2938 28 1 5.7923 -1.9674 -0.9305 29 1 4.5926 -4.7940 -1.0561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057788497.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:48 Heat of formation + Delta-G solvation = -61.217903 kcal Electronic energy + Delta-G solvation = -18481.684150 eV Core-core repulsion = 15395.535744 eV Total energy + Delta-G solvation = -3086.148406 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.34886 -39.62585 -38.73017 -37.46915 -36.52900 -34.01307 -32.90422 -31.06404 -29.92029 -27.87234 -24.89708 -24.15203 -23.46886 -20.62413 -20.12893 -19.44471 -18.05290 -17.57770 -17.02074 -16.57955 -15.90852 -15.63498 -15.48732 -15.24711 -14.87244 -14.33290 -14.11830 -13.69208 -13.55609 -13.30708 -13.08001 -12.97798 -12.82499 -12.54587 -12.31428 -12.20312 -11.83488 -11.74564 -11.30186 -10.88986 -10.53732 -9.35903 -8.83550 -8.36919 -6.40070 0.16042 0.40022 1.23548 1.29400 1.33973 1.44285 1.63925 1.99046 2.28637 2.66802 2.68305 3.01238 3.34632 3.88015 3.92258 3.95809 4.28444 4.37561 4.55274 4.75948 4.80316 4.94563 5.02464 5.13972 5.25239 5.35894 5.39944 5.67466 5.89414 6.07759 6.35743 6.81892 7.05729 7.53750 8.50128 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.011535 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.161921 B = 2426.814495 C = 4061.760214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.081 3.919 3 H 0.112 0.888 4 O -0.307 6.307 5 C 0.044 3.956 6 C -0.098 4.098 7 C -0.114 4.114 8 C -0.040 4.040 9 Cl -0.072 7.072 10 C -0.090 4.090 11 C 0.122 3.878 12 N -0.398 5.398 13 C -0.376 4.376 14 H 0.080 0.920 15 C 0.020 3.980 16 N -0.865 5.865 17 Si 0.977 3.023 18 H -0.268 1.268 19 H -0.270 1.270 20 H -0.256 1.256 21 C 0.426 3.574 22 O -0.572 6.572 23 H 0.109 0.891 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.174 0.826 27 H 0.170 0.830 28 H 0.115 0.885 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 5.487 8.793 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.022 3.978 3 H 0.129 0.871 4 O -0.222 6.222 5 C -0.003 4.003 6 C -0.117 4.117 7 C -0.134 4.134 8 C -0.068 4.068 9 Cl -0.044 7.044 10 C -0.112 4.112 11 C 0.025 3.975 12 N -0.108 5.108 13 C -0.502 4.502 14 H 0.097 0.903 15 C -0.187 4.187 16 N -0.497 5.497 17 Si 0.798 3.202 18 H -0.192 1.192 19 H -0.195 1.195 20 H -0.180 1.180 21 C 0.217 3.783 22 O -0.455 6.455 23 H 0.127 0.873 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.191 0.809 27 H 0.187 0.813 28 H 0.133 0.867 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.475 5.208 8.412 10.199 hybrid contribution 0.625 -0.807 -1.428 1.756 sum 3.100 4.401 6.984 8.818 Atomic orbital electron populations 1.21638 0.87707 1.03409 1.04955 1.22747 0.98963 0.95977 0.80117 0.87070 1.86083 1.21813 1.74797 1.39557 1.19031 0.83903 1.03968 0.93366 1.20577 0.92621 1.02227 0.96226 1.20954 0.93932 1.01457 0.97038 1.20683 0.85730 1.05530 0.94819 1.98309 1.15264 1.91878 1.98909 1.20301 0.91989 1.01204 0.97736 1.18376 0.92285 1.00513 0.86354 1.41488 1.15115 1.44738 1.09433 1.19403 1.41520 1.02000 0.87278 0.90259 1.26191 0.97866 0.94485 1.00167 1.70066 1.39176 1.11487 1.28983 0.85245 0.78741 0.78214 0.77953 1.19206 1.19507 1.18043 1.22314 0.80896 0.83557 0.91550 1.90516 1.56290 1.63361 1.35310 0.87274 0.89191 0.93133 0.80894 0.81279 0.86707 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 9.15 71.98 0.66 -2.99 15 2 C 0.08 3.06 3.68 29.88 0.11 3.17 15 3 H 0.11 3.56 8.14 -2.39 -0.02 3.54 15 4 O -0.31 -11.90 10.09 -93.12 -0.94 -12.84 15 5 C 0.04 1.77 6.44 22.62 0.15 1.91 15 6 C -0.10 -3.06 10.00 22.32 0.22 -2.83 15 7 C -0.11 -3.44 9.82 22.33 0.22 -3.22 15 8 C -0.04 -1.47 6.32 22.34 0.14 -1.33 15 9 Cl -0.07 -2.30 28.95 -2.72 -0.08 -2.38 15 10 C -0.09 -4.04 7.48 22.38 0.17 -3.87 15 11 C 0.12 5.81 5.47 38.25 0.21 6.02 15 12 N -0.40 -21.28 2.75 -458.09 -1.26 -22.54 15 13 C -0.38 -21.23 8.32 84.02 0.70 -20.53 15 14 H 0.08 4.63 7.84 -2.91 -0.02 4.61 15 15 C 0.02 1.06 3.51 84.91 0.30 1.35 15 16 N -0.86 -46.99 11.45 21.65 0.25 -46.74 15 17 Si 0.98 41.60 29.58 68.60 2.03 43.63 15 18 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 21 C 0.43 21.42 7.33 87.64 0.64 22.07 15 22 O -0.57 -31.74 16.15 -3.06 -0.05 -31.79 15 23 H 0.11 2.42 8.14 -2.38 -0.02 2.40 15 24 H 0.09 2.65 7.85 -2.39 -0.02 2.63 15 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.17 4.00 8.06 -2.91 -0.02 3.97 15 27 H 0.17 3.70 8.06 -2.91 -0.02 3.68 15 28 H 0.11 5.63 6.11 -2.91 -0.02 5.61 15 29 H 0.28 14.25 8.31 -92.71 -0.77 13.48 15 Total: -1.00 -66.58 268.48 4.65 -61.93 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.19 Total: 10.98 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 3.51 Total: -0.25 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -1.01 Total: -69.28 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.99 Total: -44.63 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.08 Total: -2.38 kcal Total: -66.58 4.65 -61.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057788497.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.712 kcal (2) G-P(sol) polarization free energy of solvation -66.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds