Wall clock time and date at job start Mon Mar 30 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99996 * 2 1 4 4 H 1.48497 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46991 * 299.99908 * 3 2 1 6 6 H 1.48501 * 109.47229 * 60.00003 * 3 2 1 7 7 C 1.37874 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00699 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99703 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.46996 * 110.99498 * 293.95458 * 10 9 7 12 12 C 1.53358 * 109.07862 * 196.06493 * 11 10 9 13 13 C 1.51412 * 108.06858 * 311.15325 * 12 11 10 14 14 S 1.75592 * 125.99442 * 195.58869 * 13 12 11 15 15 C 1.75784 * 91.04290 * 179.91426 * 14 13 12 16 16 C 1.33027 * 109.60450 * 0.02562 * 15 14 13 17 17 C 1.34793 * 123.96036 * 15.52776 * 13 12 11 18 18 C 1.46890 * 111.00682 * 58.31035 * 10 9 7 19 19 H 1.09003 * 109.59886 * 302.93426 * 18 10 9 20 20 C 1.50707 * 109.61649 * 63.43871 * 18 10 9 21 21 O 1.20825 * 119.99820 * 359.16126 * 20 18 10 22 22 O 1.34228 * 119.99879 * 179.15771 * 20 18 10 23 23 H 0.97007 * 120.00222 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46578 * 60.00423 * 9 7 2 25 25 H 1.09000 * 109.46887 * 300.00050 * 9 7 2 26 26 H 1.08993 * 109.53647 * 76.18717 * 11 10 9 27 27 H 1.09000 * 109.53859 * 315.94176 * 11 10 9 28 28 H 1.09004 * 109.74204 * 191.51143 * 12 11 10 29 29 H 1.09004 * 109.78516 * 70.81934 * 12 11 10 30 30 H 1.07999 * 125.20233 * 180.02562 * 15 14 13 31 31 H 1.07998 * 122.17192 * 180.28372 * 16 15 14 32 32 H 0.96704 * 117.00066 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9713 -3.6539 -1.2547 12 6 3.6449 -5.0251 -1.3892 13 6 4.3451 -5.3345 -0.0829 14 16 5.5651 -6.5726 0.1661 15 6 5.7068 -6.1372 1.8632 16 6 4.8735 -5.1375 2.1386 17 6 4.1097 -4.6791 1.0713 18 6 3.0953 -3.5478 1.1663 19 1 3.6154 -2.5899 1.1743 20 6 2.2863 -3.6984 2.4289 21 8 1.0871 -3.8323 2.3656 22 8 2.8980 -3.6840 3.6236 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.7324 -2.8738 -1.2410 27 1 2.2988 -3.4940 -2.0975 28 1 4.3728 -4.9998 -2.2002 29 1 2.8927 -5.7872 -1.5933 30 1 6.3692 -6.6090 2.5738 31 1 4.7987 -4.7067 3.1261 32 1 2.3373 -3.7845 4.4051 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061895248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:46 Heat of formation + Delta-G solvation = -44.603785 kcal Electronic energy + Delta-G solvation = -18653.408424 eV Core-core repulsion = 15705.857261 eV Total energy + Delta-G solvation = -2947.551163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16993 -38.32993 -36.24584 -35.18090 -32.93578 -31.59201 -29.59999 -26.90615 -25.09441 -23.71488 -22.42785 -21.37380 -19.96516 -18.02124 -17.56472 -17.08217 -16.44030 -15.63999 -15.45863 -14.83225 -14.64579 -14.06589 -13.84783 -13.36737 -12.89207 -12.77305 -12.54939 -12.28773 -11.79001 -11.42872 -11.21348 -11.14561 -11.10974 -10.90483 -10.81442 -10.41593 -10.32785 -10.03254 -9.82038 -9.42204 -8.43206 -8.33791 -8.14590 -7.34409 -6.07194 -4.17881 1.19601 1.79096 2.14144 2.78589 2.97047 3.23065 3.31556 3.33932 3.57145 4.35648 4.75799 5.00867 5.09867 5.24250 5.46244 5.50963 5.72332 5.77357 5.88686 6.02601 6.08612 6.29234 6.35110 6.53967 6.55660 6.74653 6.98617 7.14982 7.54189 7.83617 7.89932 8.14394 8.19474 8.56318 8.92571 9.49123 10.97924 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.006800 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.619186 B = 4116.865274 C = 4508.953260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.069 3.931 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.174 3.826 10 N -0.524 5.524 11 C 0.072 3.928 12 C -0.049 4.049 13 C -0.149 4.149 14 S 0.076 5.924 15 C -0.226 4.226 16 C -0.113 4.113 17 C -0.107 4.107 18 C 0.167 3.833 19 H 0.101 0.899 20 C 0.494 3.506 21 O -0.484 6.484 22 O -0.524 6.524 23 H 0.263 0.737 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.150 0.850 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.489 -10.621 2.388 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.601 4.601 8 H 0.074 0.926 9 C 0.049 3.951 10 N -0.249 5.249 11 C -0.058 4.058 12 C -0.089 4.089 13 C -0.267 4.267 14 S 0.341 5.659 15 C -0.361 4.361 16 C -0.143 4.143 17 C -0.119 4.119 18 C 0.055 3.945 19 H 0.118 0.882 20 C 0.334 3.666 21 O -0.369 6.369 22 O -0.336 6.336 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.179 0.821 31 H 0.168 0.832 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 10.677 -12.050 1.139 16.140 hybrid contribution -0.112 2.772 1.475 3.142 sum 10.565 -9.278 2.614 14.302 Atomic orbital electron populations 1.69964 1.06012 1.26810 1.49340 1.24938 0.94739 0.99100 0.94702 0.86621 0.80142 0.83992 0.77791 1.19760 1.20799 1.20880 1.21792 0.93135 0.92304 1.52851 0.92553 1.20136 0.90712 0.84139 1.00076 1.62270 1.15699 1.48058 0.98839 1.21953 0.96979 0.93668 0.93201 1.20572 0.97949 0.99329 0.91023 1.24872 1.01694 1.00063 1.00042 1.83896 1.39009 1.36766 1.06256 1.25242 1.07514 1.04715 0.98598 1.20166 0.96224 0.97279 1.00677 1.19385 0.99997 0.99756 0.92773 1.19758 0.90105 0.96523 0.88115 0.88153 1.22996 0.87125 0.72156 0.84287 1.90677 1.16023 1.43302 1.86869 1.84503 1.46152 1.85931 1.17053 0.92739 0.94597 0.92102 0.93804 0.89667 0.90554 0.89676 0.82079 0.83248 0.74053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.56 -15.13 7.75 -34.44 -0.27 -15.40 16 8 H 0.06 1.48 5.94 -52.49 -0.31 1.17 16 9 C 0.17 4.51 4.70 -4.97 -0.02 4.49 16 10 N -0.52 -11.34 4.34 -229.63 -1.00 -12.34 16 11 C 0.07 1.33 5.05 -3.59 -0.02 1.31 16 12 C -0.05 -0.74 6.50 -27.35 -0.18 -0.91 16 13 C -0.15 -2.37 6.42 -35.18 -0.23 -2.59 16 14 S 0.08 0.98 23.32 -107.50 -2.51 -1.53 16 15 C -0.23 -2.87 11.21 28.92 0.32 -2.55 16 16 C -0.11 -1.67 9.30 -41.10 -0.38 -2.05 16 17 C -0.11 -1.84 5.44 -104.78 -0.57 -2.41 16 18 C 0.17 3.36 2.26 -69.25 -0.16 3.20 16 19 H 0.10 2.15 6.28 -51.93 -0.33 1.83 16 20 C 0.49 9.89 7.27 36.01 0.26 10.15 16 21 O -0.48 -11.33 14.83 -18.75 -0.28 -11.61 16 22 O -0.52 -7.97 11.26 -39.25 -0.44 -8.41 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.04 0.99 7.96 -51.93 -0.41 0.58 16 25 H 0.06 1.76 5.67 -51.93 -0.29 1.47 16 26 H 0.04 0.84 7.33 -51.93 -0.38 0.46 16 27 H 0.08 1.55 7.87 -51.93 -0.41 1.14 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.15 2.06 6.33 -52.49 -0.33 1.72 16 32 H 0.40 4.27 9.10 45.56 0.41 4.69 16 LS Contribution 278.38 15.07 4.20 4.20 Total: -1.00 -31.71 278.38 -8.10 -39.81 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -2.46 Total: 3.99 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.33 Total: -4.95 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.26 Total: -37.56 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.72 Total: -20.02 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.71 -8.10 -39.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061895248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.789 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds