Wall clock time and date at job start Mon Mar 30 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99996 * 2 1 4 4 H 1.48497 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46991 * 299.99908 * 3 2 1 6 6 H 1.48501 * 109.47229 * 60.00003 * 3 2 1 7 7 C 1.37874 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00699 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99703 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.46996 * 110.99498 * 293.95458 * 10 9 7 12 12 C 1.53358 * 109.07862 * 196.06493 * 11 10 9 13 13 C 1.51412 * 108.06858 * 311.15325 * 12 11 10 14 14 S 1.75592 * 125.99442 * 195.58869 * 13 12 11 15 15 C 1.75784 * 91.04290 * 179.91426 * 14 13 12 16 16 C 1.33027 * 109.60450 * 0.02562 * 15 14 13 17 17 C 1.34793 * 123.96036 * 15.52776 * 13 12 11 18 18 C 1.46890 * 111.00682 * 58.31035 * 10 9 7 19 19 H 1.09003 * 109.59886 * 302.93426 * 18 10 9 20 20 C 1.50707 * 109.61649 * 63.43871 * 18 10 9 21 21 O 1.20825 * 119.99820 * 359.16126 * 20 18 10 22 22 O 1.34228 * 119.99879 * 179.15771 * 20 18 10 23 23 H 0.97007 * 120.00222 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46578 * 60.00423 * 9 7 2 25 25 H 1.09000 * 109.46887 * 300.00050 * 9 7 2 26 26 H 1.08993 * 109.53647 * 76.18717 * 11 10 9 27 27 H 1.09000 * 109.53859 * 315.94176 * 11 10 9 28 28 H 1.09004 * 109.74204 * 191.51143 * 12 11 10 29 29 H 1.09004 * 109.78516 * 70.81934 * 12 11 10 30 30 H 1.07999 * 125.20233 * 180.02562 * 15 14 13 31 31 H 1.07998 * 122.17192 * 180.28372 * 16 15 14 32 32 H 0.96704 * 117.00066 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9713 -3.6539 -1.2547 12 6 3.6449 -5.0251 -1.3892 13 6 4.3451 -5.3345 -0.0829 14 16 5.5651 -6.5726 0.1661 15 6 5.7068 -6.1372 1.8632 16 6 4.8735 -5.1375 2.1386 17 6 4.1097 -4.6791 1.0713 18 6 3.0953 -3.5478 1.1663 19 1 3.6154 -2.5899 1.1743 20 6 2.2863 -3.6984 2.4289 21 8 1.0871 -3.8323 2.3656 22 8 2.8980 -3.6840 3.6236 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.7324 -2.8738 -1.2410 27 1 2.2988 -3.4940 -2.0975 28 1 4.3728 -4.9998 -2.2002 29 1 2.8927 -5.7872 -1.5933 30 1 6.3692 -6.6090 2.5738 31 1 4.7987 -4.7067 3.1261 32 1 2.3373 -3.7845 4.4051 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061895248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:46 Heat of formation + Delta-G solvation = -67.042484 kcal Electronic energy + Delta-G solvation = -18654.381439 eV Core-core repulsion = 15705.857261 eV Total energy + Delta-G solvation = -2948.524178 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.68322 -39.73389 -37.69654 -36.68756 -34.84471 -33.14594 -31.05882 -28.69331 -26.72593 -25.14413 -24.06548 -22.75780 -21.51334 -19.40305 -19.15915 -18.65876 -17.83313 -17.23365 -16.92581 -16.69587 -16.16263 -15.44969 -15.32600 -14.79767 -14.54583 -14.12482 -14.00555 -13.83776 -13.30294 -13.04427 -12.88912 -12.70354 -12.55437 -12.47610 -12.39626 -12.13223 -11.85058 -11.79154 -11.60211 -11.12944 -10.56757 -9.42152 -9.34896 -9.05547 -8.18081 -6.38909 0.07373 0.69076 1.05260 1.34137 1.35840 1.36122 1.47819 1.64047 2.19916 2.34750 3.07583 3.18391 3.72819 3.85170 4.22716 4.36314 4.39339 4.40493 4.55800 4.61315 4.87792 4.90966 5.11915 5.18588 5.21486 5.33551 5.38868 5.58000 5.62950 5.81872 5.93542 6.14787 6.33843 6.81570 7.11833 7.32849 8.85544 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.006800 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.619186 B = 4116.865274 C = 4508.953260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.563 4.563 8 H 0.061 0.939 9 C 0.191 3.809 10 N -0.530 5.530 11 C 0.069 3.931 12 C -0.040 4.040 13 C -0.174 4.174 14 S 0.138 5.862 15 C -0.212 4.212 16 C -0.134 4.134 17 C -0.127 4.127 18 C 0.165 3.835 19 H 0.081 0.919 20 C 0.497 3.503 21 O -0.528 6.528 22 O -0.505 6.505 23 H 0.265 0.735 24 H 0.007 0.993 25 H 0.026 0.974 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.197 0.803 31 H 0.155 0.845 32 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.411 -11.729 2.622 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.602 4.602 8 H 0.079 0.921 9 C 0.065 3.935 10 N -0.255 5.255 11 C -0.060 4.060 12 C -0.080 4.080 13 C -0.292 4.292 14 S 0.404 5.596 15 C -0.347 4.347 16 C -0.164 4.164 17 C -0.140 4.140 18 C 0.053 3.947 19 H 0.098 0.902 20 C 0.338 3.662 21 O -0.417 6.417 22 O -0.318 6.318 23 H 0.074 0.926 24 H 0.025 0.975 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.214 0.786 31 H 0.172 0.828 32 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 13.638 -13.178 1.393 19.016 hybrid contribution -0.955 2.999 1.449 3.465 sum 12.683 -10.179 2.841 16.509 Atomic orbital electron populations 1.70102 1.07774 1.27868 1.50603 1.25841 0.95556 1.02967 0.94324 0.85510 0.79118 0.79233 0.77887 1.18659 1.20121 1.20552 1.22018 0.93343 0.92848 1.52023 0.92134 1.19681 0.91187 0.85753 0.96908 1.62140 1.16568 1.45804 1.00939 1.22023 0.96365 0.96040 0.91536 1.20514 0.98564 0.96800 0.92088 1.25086 1.03002 1.01434 0.99694 1.83698 1.36179 1.34024 1.05708 1.25710 1.06367 1.03189 0.99385 1.20154 0.97215 0.98644 1.00397 1.19297 1.00376 0.99795 0.94540 1.19698 0.90279 0.97285 0.87476 0.90188 1.23111 0.86467 0.71062 0.85516 1.90664 1.17710 1.45605 1.87676 1.84439 1.45811 1.84900 1.16649 0.92573 0.97475 0.95578 0.94864 0.90281 0.87429 0.89079 0.78601 0.82783 0.71513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.13 13.29 21.45 0.28 -55.85 16 2 C 0.01 0.74 5.46 84.65 0.46 1.20 16 3 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.56 -31.33 7.75 25.60 0.20 -31.14 16 8 H 0.06 3.25 5.94 -2.91 -0.02 3.23 16 9 C 0.19 10.46 4.70 85.56 0.40 10.87 16 10 N -0.53 -23.82 4.34 -880.41 -3.82 -27.64 16 11 C 0.07 2.61 5.05 86.40 0.44 3.05 16 12 C -0.04 -1.16 6.50 30.19 0.20 -0.96 16 13 C -0.17 -5.18 6.42 25.12 0.16 -5.02 16 14 S 0.14 3.03 23.32 -56.49 -1.32 1.71 16 15 C -0.21 -4.53 11.21 66.66 0.75 -3.78 16 16 C -0.13 -3.66 9.30 21.29 0.20 -3.46 16 17 C -0.13 -4.25 5.44 -19.97 -0.11 -4.36 16 18 C 0.16 6.76 2.26 43.93 0.10 6.85 16 19 H 0.08 3.55 6.28 -2.39 -0.01 3.54 16 20 C 0.50 20.32 7.27 71.24 0.52 20.84 16 21 O -0.53 -25.81 14.83 21.97 0.33 -25.48 16 22 O -0.50 -15.03 11.26 -51.40 -0.58 -15.61 16 23 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 24 H 0.01 0.42 7.96 -2.39 -0.02 0.40 16 25 H 0.03 1.62 5.67 -2.39 -0.01 1.60 16 26 H 0.03 1.30 7.33 -2.39 -0.02 1.28 16 27 H 0.08 2.99 7.87 -2.39 -0.02 2.97 16 28 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.15 3.92 6.33 -2.91 -0.02 3.91 16 32 H 0.42 8.56 9.10 -74.05 -0.67 7.89 16 Total: -1.00 -71.13 278.38 0.72 -70.41 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.49 Total: 12.58 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 3.31 Total: -5.91 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -3.54 Total: -83.49 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.25 Total: -41.10 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.32 Total: 1.71 kcal Total: -71.13 0.72 -70.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061895248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.365 kcal (2) G-P(sol) polarization free energy of solvation -71.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds