Wall clock time and date at job start Mon Mar 30 2020 04:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48509 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47452 * 299.99864 * 3 2 1 6 6 H 1.48495 * 109.47595 * 60.00181 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99627 * 197.85134 * 7 2 1 9 9 C 1.41391 * 120.00129 * 17.85075 * 7 2 1 10 10 C 1.40718 * 120.24500 * 204.37426 * 9 7 2 11 11 C 1.37613 * 119.74556 * 180.29972 * 10 9 7 12 12 C 1.38634 * 120.24846 * 359.42742 * 11 10 9 13 13 S 1.76200 * 119.75186 * 180.30382 * 12 11 10 14 14 O 1.42109 * 106.40056 * 23.83159 * 13 12 11 15 15 O 1.42100 * 106.40335 * 156.75305 * 13 12 11 16 16 N 1.65601 * 107.21684 * 270.29707 * 13 12 11 17 17 C 1.46496 * 120.00463 * 64.99825 * 16 13 12 18 18 C 1.53005 * 117.50141 * 213.62625 * 17 16 13 19 19 C 1.52992 * 117.50012 * 145.00057 * 17 16 13 20 20 C 1.38637 * 120.50173 * 0.59671 * 12 11 10 21 21 C 1.37623 * 120.24324 * 359.68437 * 20 12 11 22 22 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.12385 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.87562 * 179.72347 * 11 10 9 25 25 H 0.97009 * 119.99671 * 244.99723 * 16 13 12 26 26 H 1.09006 * 115.54906 * 359.32750 * 17 16 13 27 27 H 1.09001 * 117.49615 * 359.97438 * 18 17 16 28 28 H 1.08995 * 117.50033 * 145.01945 * 18 17 16 29 29 H 1.09008 * 117.50032 * 214.97483 * 19 17 16 30 30 H 1.08998 * 117.50209 * 359.97438 * 19 17 16 31 31 H 1.07996 * 119.88007 * 179.70043 * 20 12 11 32 32 H 1.08004 * 120.12120 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3764 10 6 1.8259 -3.6500 0.0821 11 6 1.1833 -4.8069 -0.2951 12 6 0.0661 -4.7501 -1.1140 13 16 -0.7513 -6.2391 -1.5824 14 8 -0.4342 -7.2014 -0.5860 15 8 -2.0840 -5.8770 -1.9171 16 7 -0.0440 -6.7665 -2.9838 17 6 1.3591 -7.1877 -2.9828 18 6 2.1795 -6.9152 -4.2452 19 6 1.7503 -8.3439 -3.9052 20 6 -0.4093 -3.5310 -1.5721 21 6 0.2209 -2.3617 -1.2122 22 1 -0.4850 0.8400 0.0004 23 1 2.6932 -3.6962 0.7240 24 1 1.5479 -5.7624 0.0520 25 1 -0.5588 -6.7967 -3.8054 26 1 1.8715 -7.1135 -2.0235 27 1 1.6751 -6.4229 -5.0767 28 1 3.2317 -6.6616 -4.1167 29 1 2.5205 -9.0303 -3.5530 30 1 0.9637 -8.7915 -4.5125 31 1 -1.2776 -3.4988 -2.2134 32 1 -0.1509 -1.4131 -1.5705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063046452.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:07 Heat of formation + Delta-G solvation = -62.019387 kcal Electronic energy + Delta-G solvation = -17860.951801 eV Core-core repulsion = 14912.645441 eV Total energy + Delta-G solvation = -2948.306360 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.38285 -38.62360 -38.06344 -36.80126 -35.80655 -32.96856 -32.06744 -31.29627 -27.62272 -23.32006 -23.16880 -23.10777 -22.75281 -20.53587 -19.43257 -18.77319 -18.15269 -17.43326 -17.07540 -16.19719 -15.81599 -15.56761 -15.18742 -14.94935 -14.15831 -13.98234 -13.77909 -13.57028 -13.19783 -13.08626 -13.03808 -12.95143 -12.90666 -12.86520 -12.57395 -12.30275 -11.98008 -11.55375 -11.35497 -11.23237 -11.19566 -9.92137 -9.76644 -9.54826 -8.87365 -6.64996 -0.32868 0.48402 1.05871 1.36068 1.41959 1.53647 2.11323 2.21237 2.52524 2.88319 3.07805 3.52603 3.58449 3.94656 4.08015 4.17593 4.23094 4.31440 4.35103 4.86589 4.87333 4.94501 5.09863 5.10407 5.24060 5.32111 5.34397 5.52609 5.59648 5.76247 5.93257 6.15305 6.15639 6.49399 6.68374 6.81311 8.08074 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.005308 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.800698 B = 5274.123797 C = 5687.024185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.251 1.251 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.093 0.907 9 C 0.110 3.890 10 C -0.255 4.255 11 C -0.001 4.001 12 C -0.795 4.795 13 S 2.730 3.270 14 O -0.999 6.999 15 O -1.006 7.006 16 N -1.082 6.082 17 C 0.058 3.942 18 C -0.185 4.185 19 C -0.173 4.173 20 C -0.021 4.021 21 C -0.208 4.208 22 H 0.298 0.702 23 H 0.113 0.887 24 H 0.128 0.872 25 H 0.423 0.577 26 H 0.129 0.871 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -6.733 -7.313 10.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.174 1.174 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.111 0.889 9 C 0.106 3.894 10 C -0.275 4.275 11 C -0.021 4.021 12 C -0.888 4.888 13 S 2.825 3.175 14 O -0.989 6.989 15 O -0.997 6.997 16 N -0.839 5.839 17 C -0.050 4.050 18 C -0.224 4.224 19 C -0.212 4.212 20 C -0.041 4.041 21 C -0.229 4.229 22 H 0.109 0.891 23 H 0.131 0.869 24 H 0.146 0.854 25 H 0.259 0.741 26 H 0.147 0.853 27 H 0.120 0.880 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.841 -7.029 -6.681 10.430 hybrid contribution 0.236 1.440 -0.219 1.475 sum 4.077 -5.589 -6.901 9.771 Atomic orbital electron populations 1.69874 1.09533 1.31821 1.31091 1.27058 0.95526 1.05368 0.90651 0.84984 0.79549 0.75003 0.79239 1.17449 1.18594 1.18790 1.20262 0.99008 0.92061 1.37842 0.88852 1.18221 0.90651 0.93436 0.87045 1.21265 1.05193 0.92775 1.08273 1.20464 0.91680 0.98015 0.91963 1.29618 1.17866 1.16454 1.24862 1.00166 0.71944 0.73018 0.72363 1.93466 1.85383 1.60966 1.59110 1.93465 1.36638 1.85127 1.84426 1.54888 1.20271 1.81012 1.27755 1.21478 0.81347 1.04464 0.97674 1.23461 1.01237 0.99178 0.98534 1.23493 1.03956 0.91615 1.02172 1.20450 0.96133 0.91992 0.95557 1.21356 1.00879 0.97067 1.03564 0.89078 0.86889 0.85440 0.74131 0.85303 0.88020 0.87114 0.86447 0.87522 0.86872 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.29 10.95 21.83 0.24 -39.05 16 2 C 0.03 1.54 5.14 85.26 0.44 1.97 16 3 Si 0.99 34.47 29.59 68.60 2.03 36.50 16 4 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 5 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 6 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 7 C -0.46 -23.17 9.05 23.46 0.21 -22.96 16 8 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 9 C 0.11 5.70 5.57 -21.29 -0.12 5.58 16 10 C -0.25 -12.05 9.80 22.73 0.22 -11.83 16 11 C 0.00 -0.07 9.49 22.22 0.21 0.15 16 12 C -0.79 -34.72 5.97 22.46 0.13 -34.58 16 13 S 2.73 102.18 5.71 -56.49 -0.32 101.86 16 14 O -1.00 -41.04 17.03 -128.00 -2.18 -43.22 16 15 O -1.01 -42.51 17.26 -128.00 -2.21 -44.72 16 16 N -1.08 -30.21 6.04 -169.39 -1.02 -31.24 16 17 C 0.06 1.44 6.47 44.99 0.29 1.73 16 18 C -0.18 -3.65 10.46 30.60 0.32 -3.33 16 19 C -0.17 -3.11 10.46 30.59 0.32 -2.79 16 20 C -0.02 -1.01 9.49 22.22 0.21 -0.80 16 21 C -0.21 -10.78 8.70 22.73 0.20 -10.58 16 22 H 0.30 12.98 8.30 -92.71 -0.77 12.21 16 23 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 24 H 0.13 4.84 7.60 -2.91 -0.02 4.81 16 25 H 0.42 9.66 8.96 -96.74 -0.87 8.79 16 26 H 0.13 3.32 8.11 -2.38 -0.02 3.30 16 27 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.11 4.97 7.60 -2.91 -0.02 4.95 16 32 H 0.11 5.81 6.16 -2.91 -0.02 5.79 16 Total: -1.00 -64.13 293.76 -0.75 -64.88 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.28 Total: 32.42 kcal Atomic # 6 Polarization: -79.87 SS G_CDS: 2.44 Total: -77.43 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -0.78 Total: -70.29 kcal Atomic # 8 Polarization: -83.56 SS G_CDS: -4.39 Total: -87.94 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.50 kcal Atomic # 16 Polarization: 102.18 SS G_CDS: -0.32 Total: 101.86 kcal Total: -64.13 -0.75 -64.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046452.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.861 kcal (2) G-P(sol) polarization free energy of solvation -64.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds