Wall clock time and date at job start Mon Mar 30 2020 05:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81396 * 103.00176 * 2 1 4 4 C 1.50702 * 109.47389 * 180.02562 * 3 2 1 5 5 O 1.21292 * 119.99884 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00221 * 179.97438 * 4 3 2 7 7 C 1.39994 * 119.99871 * 175.63970 * 6 4 3 8 8 C 1.38717 * 120.10408 * 34.56381 * 7 6 4 9 9 C 1.38185 * 120.00058 * 179.97438 * 8 7 6 10 10 C 1.38349 * 120.19971 * 0.02562 * 9 8 7 11 11 C 1.38157 * 120.20606 * 359.97438 * 10 9 8 12 12 C 1.38747 * 119.99756 * 0.02562 * 11 10 9 13 13 O 1.35774 * 120.10033 * 179.97438 * 12 11 10 14 14 C 1.34804 * 117.00225 * 354.55607 * 13 12 11 15 15 H 1.08001 * 120.00088 * 5.04431 * 14 13 12 16 16 C 1.38644 * 120.00455 * 185.04248 * 14 13 12 17 17 N 1.31567 * 119.99446 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00182 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47049 * 60.00367 * 18 16 14 20 20 H 1.48500 * 109.46810 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47108 * 300.00091 * 18 16 14 22 22 H 1.09002 * 109.46677 * 299.99976 * 1 2 3 23 23 H 1.09001 * 109.47129 * 59.99600 * 1 2 3 24 24 H 1.08997 * 109.46997 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47205 * 60.00341 * 3 2 1 26 26 H 1.09001 * 109.47376 * 300.00274 * 3 2 1 27 27 H 0.97004 * 119.99727 * 355.63905 * 6 4 3 28 28 H 1.08003 * 120.00419 * 0.25636 * 8 7 6 29 29 H 1.08003 * 119.90459 * 179.97438 * 9 8 7 30 30 H 1.08007 * 119.90037 * 179.97438 * 10 9 8 31 31 H 1.08006 * 120.00462 * 180.02562 * 11 10 9 32 32 H 0.97006 * 119.99650 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 8 4.4405 0.9620 -0.0015 6 7 4.2576 3.1730 -0.0013 7 6 5.6454 3.3322 0.0903 8 6 6.4924 2.4090 -0.5052 9 6 7.8620 2.5685 -0.4139 10 6 8.3929 3.6470 0.2709 11 6 7.5571 4.5715 0.8671 12 6 6.1807 4.4196 0.7807 13 8 5.3574 5.3266 1.3663 14 6 5.9378 6.2885 2.1114 15 1 7.0144 6.3622 2.1547 16 6 5.1526 7.1834 2.8220 17 7 3.8411 7.0940 2.7687 18 14 5.9569 8.5158 3.8550 19 1 6.7895 9.3829 2.9833 20 1 4.9064 9.3361 4.5098 21 1 6.8140 7.8881 4.8925 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8032 2.2371 0.8900 26 1 1.8031 2.2371 -0.8900 27 1 3.6832 3.9521 -0.0652 28 1 6.0815 1.5681 -1.0440 29 1 8.5200 1.8486 -0.8777 30 1 9.4641 3.7667 0.3395 31 1 7.9751 5.4125 1.4005 32 1 3.2917 7.7199 3.2662 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070436360.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:05 Heat of formation + Delta-G solvation = -50.557963 kcal Electronic energy + Delta-G solvation = -17539.965246 eV Core-core repulsion = 14592.155890 eV Total energy + Delta-G solvation = -2947.809356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.59960 -40.14827 -38.03203 -35.72035 -34.25017 -32.02185 -30.71821 -29.85209 -29.21718 -27.31547 -24.03692 -23.04581 -21.57294 -19.87091 -19.40911 -18.25206 -17.83260 -17.00458 -16.83590 -16.33357 -15.98856 -15.59734 -15.47166 -15.24117 -14.69161 -14.58572 -14.55473 -14.24258 -13.62473 -13.49854 -13.19502 -13.10525 -12.76038 -12.57590 -12.38840 -12.16198 -11.51420 -11.32999 -10.97391 -10.84923 -10.76818 -9.42146 -8.78897 -8.68571 -8.46428 -6.11416 0.38672 0.47847 0.67562 1.37840 1.47027 1.49953 1.51957 1.60792 2.13417 2.20039 2.84753 3.13028 3.40362 3.57846 4.00125 4.15296 4.22550 4.27099 4.37560 4.39031 4.50161 4.61752 4.80630 4.92113 5.08568 5.10596 5.44762 5.47549 5.66582 5.74742 5.99656 6.18360 6.40729 6.98892 7.04134 7.73581 8.75240 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.005486 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.579640 B = 5102.573715 C = 6539.322013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.251 6.251 3 C -0.110 4.110 4 C 0.522 3.478 5 O -0.547 6.547 6 N -0.648 5.648 7 C 0.055 3.945 8 C -0.085 4.085 9 C -0.179 4.179 10 C -0.079 4.079 11 C -0.231 4.231 12 C 0.101 3.899 13 O -0.217 6.217 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.015 4.015 17 N -0.913 5.913 18 Si 1.012 2.988 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.262 1.262 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.117 0.883 25 H 0.125 0.875 26 H 0.141 0.859 27 H 0.417 0.583 28 H 0.134 0.866 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 -6.918 -5.528 9.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.027 6.027 3 C -0.260 4.260 4 C 0.310 3.690 5 O -0.425 6.425 6 N -0.292 5.292 7 C -0.039 4.039 8 C -0.105 4.105 9 C -0.198 4.198 10 C -0.097 4.097 11 C -0.250 4.250 12 C 0.049 3.951 13 O -0.123 6.123 14 C -0.489 4.489 15 H 0.118 0.882 16 C -0.213 4.213 17 N -0.551 5.551 18 Si 0.833 3.167 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.187 1.187 22 H 0.105 0.895 23 H 0.112 0.888 24 H 0.136 0.864 25 H 0.143 0.857 26 H 0.159 0.841 27 H 0.253 0.747 28 H 0.151 0.849 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.147 0.853 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.309 -8.351 -5.440 10.230 hybrid contribution -0.901 2.164 0.590 2.418 sum -3.210 -6.186 -4.849 8.490 Atomic orbital electron populations 1.23581 0.91346 1.07910 1.06268 1.87610 1.09553 1.07296 1.98255 1.23416 0.94283 0.98929 1.09422 1.20328 0.90592 0.82417 0.75696 1.90671 1.62843 1.39191 1.49810 1.43094 1.05684 1.08937 1.71519 1.17172 0.83528 0.97615 1.05628 1.21045 0.93641 0.97858 0.97992 1.21057 0.94044 1.00265 1.04396 1.21197 1.00268 0.92963 0.95312 1.21221 0.92040 1.03705 1.08070 1.19596 0.91133 0.90558 0.93798 1.83855 1.34093 1.35959 1.58426 1.21723 0.93514 1.07777 1.25853 0.88241 1.26400 0.96027 1.00641 0.98269 1.70129 1.05081 1.38046 1.41822 0.84721 0.77704 0.76517 0.77806 1.18233 1.19770 1.18680 0.89473 0.88822 0.86425 0.85711 0.84119 0.74651 0.84854 0.83423 0.83250 0.85343 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 10.76 113.37 1.22 -0.67 16 2 S -0.25 -6.64 21.52 -56.49 -1.22 -7.86 16 3 C -0.11 -2.86 6.43 71.24 0.46 -2.40 16 4 C 0.52 18.66 7.70 87.66 0.67 19.33 16 5 O -0.55 -22.77 13.28 -3.07 -0.04 -22.81 16 6 N -0.65 -24.99 5.19 -303.09 -1.57 -26.56 16 7 C 0.05 2.38 6.33 38.25 0.24 2.63 16 8 C -0.09 -3.33 8.69 22.37 0.19 -3.14 16 9 C -0.18 -6.07 10.04 22.28 0.22 -5.85 16 10 C -0.08 -2.73 10.04 22.28 0.22 -2.51 16 11 C -0.23 -9.80 9.16 22.37 0.21 -9.60 16 12 C 0.10 4.87 6.67 22.69 0.15 5.02 16 13 O -0.22 -12.02 9.32 -22.75 -0.21 -12.24 16 14 C -0.41 -22.69 9.49 67.92 0.64 -22.04 16 15 H 0.10 5.05 5.21 -2.91 -0.02 5.04 16 16 C -0.02 -0.80 5.49 84.83 0.47 -0.34 16 17 N -0.91 -52.26 13.67 21.61 0.30 -51.97 16 18 Si 1.01 40.97 29.55 68.60 2.03 43.00 16 19 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.42 15.30 8.57 -92.71 -0.79 14.50 16 28 H 0.13 5.17 6.20 -2.91 -0.02 5.15 16 29 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 30 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.13 5.42 5.64 -2.91 -0.02 5.40 16 32 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -69.82 295.37 4.35 -65.48 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.36 Total: 32.52 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 4.70 Total: -19.56 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -1.28 Total: -78.53 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.25 Total: -35.04 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: -6.64 SS G_CDS: -1.22 Total: -7.86 kcal Total: -69.82 4.35 -65.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070436360.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.920 kcal (2) G-P(sol) polarization free energy of solvation -69.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds