Wall clock time and date at job start Mon Mar 30 2020 05:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47287 * 93.57819 * 3 2 1 5 5 H 1.48497 * 109.46956 * 213.58095 * 3 2 1 6 6 H 1.48497 * 109.46833 * 333.57584 * 3 2 1 7 7 C 1.38817 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99797 * 16.34595 * 7 2 1 9 9 N 1.36934 * 119.99855 * 196.34316 * 7 2 1 10 10 C 1.47427 * 125.64884 * 29.97503 * 9 7 2 11 11 C 1.54909 * 104.83069 * 204.08949 * 10 9 7 12 12 C 1.55159 * 101.58190 * 322.99013 * 11 10 9 13 13 C 1.47029 * 125.64632 * 209.66406 * 9 7 2 14 14 H 1.08994 * 109.88437 * 59.56301 * 13 9 7 15 15 C 1.50698 * 109.87942 * 298.39552 * 13 9 7 16 16 O 1.21286 * 120.00354 * 341.45402 * 15 13 9 17 17 N 1.34778 * 119.99849 * 161.45456 * 15 13 9 18 18 C 1.38998 * 120.00363 * 180.02562 * 17 15 13 19 19 N 1.29628 * 124.94298 * 359.69741 * 18 17 15 20 20 C 1.31983 * 116.91761 * 179.77217 * 19 18 17 21 21 C 1.33447 * 114.56691 * 0.51646 * 20 19 18 22 22 S 1.70970 * 124.94659 * 180.02562 * 18 17 15 23 23 H 0.96996 * 119.99965 * 0.02562 * 1 2 3 24 24 H 1.08995 * 110.36493 * 322.92388 * 10 9 7 25 25 H 1.08997 * 110.36630 * 85.25074 * 10 9 7 26 26 H 1.09001 * 111.00750 * 81.06562 * 11 10 9 27 27 H 1.09003 * 111.00225 * 204.91794 * 11 10 9 28 28 H 1.08995 * 110.71986 * 153.86778 * 12 11 10 29 29 H 1.09004 * 110.72057 * 276.96323 * 12 11 10 30 30 H 0.97010 * 119.99961 * 0.02562 * 17 15 13 31 31 H 1.08003 * 122.71987 * 180.22092 * 20 19 18 32 32 H 1.08003 * 125.96668 * 179.72790 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5734 2.0028 1.3973 5 1 3.5078 1.4632 -0.7744 6 1 1.4118 2.6733 -0.6230 7 6 2.0103 -1.2022 0.0005 8 1 1.5030 -2.1187 -0.2623 9 7 3.3381 -1.2259 0.3342 10 6 4.0072 -0.2975 1.2636 11 6 5.4972 -0.3179 0.8402 12 6 5.6911 -1.8082 0.4547 13 6 4.3313 -2.1857 -0.1700 14 1 4.3931 -2.1189 -1.2561 15 6 3.9466 -3.5840 0.2394 16 8 3.1606 -3.7556 1.1471 17 7 4.4759 -4.6440 -0.4030 18 6 4.1207 -5.9338 -0.0258 19 7 3.2965 -6.2272 0.9307 20 6 3.0690 -7.5084 1.1514 21 6 3.7409 -8.3373 0.3500 22 16 4.7134 -7.3643 -0.7506 23 1 -0.4850 0.8400 -0.0004 24 1 3.5966 0.7066 1.1578 25 1 3.8999 -0.6459 2.2908 26 1 5.6687 0.3330 -0.0172 27 1 6.1439 -0.0425 1.6733 28 1 6.4957 -1.9169 -0.2726 29 1 5.8890 -2.4129 1.3398 30 1 5.1049 -4.5067 -1.1287 31 1 2.3973 -7.8578 1.9216 32 1 3.6966 -9.4162 0.3724 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074314087.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:09 Heat of formation + Delta-G solvation = 64.747700 kcal Electronic energy + Delta-G solvation = -18201.922603 eV Core-core repulsion = 15291.406027 eV Total energy + Delta-G solvation = -2910.516576 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.22283 -38.86856 -36.98407 -34.46786 -32.60092 -30.05380 -29.88347 -28.60415 -25.14742 -24.38518 -22.43426 -20.95771 -20.59402 -19.08788 -18.62194 -17.08849 -16.53921 -16.12329 -15.70992 -15.17738 -14.78841 -14.40532 -13.80636 -13.63193 -13.17042 -12.99270 -12.91967 -12.50072 -11.64022 -11.51493 -11.41395 -11.31078 -11.18738 -10.61193 -10.56561 -10.40018 -9.80280 -9.75663 -9.41946 -9.24696 -8.92982 -8.55674 -8.10519 -7.03327 -5.94383 -3.36245 0.87990 1.08721 1.73024 2.91725 3.13885 3.30482 3.42328 3.43617 3.48211 4.50608 4.59294 4.84236 5.02175 5.17094 5.26775 5.31896 5.43989 5.55144 5.61528 5.78119 5.96214 6.04352 6.11858 6.18997 6.37603 6.45750 6.53846 6.79703 7.29829 7.74315 8.06533 8.32136 8.69921 8.82800 9.64922 10.10817 11.21459 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.030898 B = 0.005566 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.975668 B = 5029.225146 C = 5573.194076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.029 3.971 3 Si 0.897 3.103 4 H -0.284 1.284 5 H -0.272 1.272 6 H -0.304 1.304 7 C -0.242 4.242 8 H 0.086 0.914 9 N -0.576 5.576 10 C 0.108 3.892 11 C -0.134 4.134 12 C -0.118 4.118 13 C 0.152 3.848 14 H 0.071 0.929 15 C 0.483 3.517 16 O -0.440 6.440 17 N -0.643 5.643 18 C 0.294 3.706 19 N -0.483 5.483 20 C 0.076 3.924 21 C -0.290 4.290 22 S 0.084 5.916 23 H 0.265 0.735 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.416 0.584 31 H 0.176 0.824 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.826 -11.563 -2.509 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.730 3.270 4 H -0.213 1.213 5 H -0.198 1.198 6 H -0.233 1.233 7 C -0.369 4.369 8 H 0.104 0.896 9 N -0.299 5.299 10 C -0.016 4.016 11 C -0.172 4.172 12 C -0.157 4.157 13 C 0.039 3.961 14 H 0.089 0.911 15 C 0.264 3.736 16 O -0.303 6.303 17 N -0.296 5.296 18 C -0.075 4.075 19 N -0.205 5.205 20 C -0.075 4.075 21 C -0.430 4.430 22 S 0.332 5.668 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.253 0.747 31 H 0.193 0.807 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 14.374 -11.174 -2.335 18.355 hybrid contribution -0.038 0.465 0.336 0.575 sum 14.336 -10.709 -1.999 18.006 Atomic orbital electron populations 1.69797 1.05669 1.26674 1.52551 1.25178 0.95201 0.97671 0.99012 0.86695 0.79206 0.83962 0.77122 1.21263 1.19786 1.23261 1.18577 0.81321 0.94486 1.42508 0.89621 1.44471 1.05709 1.31942 1.47774 1.22123 0.90581 0.94862 0.94017 1.22788 0.97571 0.95632 1.01209 1.22506 0.95009 0.97419 1.00746 1.20914 0.90488 0.86311 0.98421 0.91122 1.23160 0.81118 0.86669 0.82666 1.90800 1.28733 1.84468 1.26309 1.43975 1.46705 1.01142 1.37792 1.24125 0.96643 0.91569 0.95201 1.66611 1.17458 1.18827 1.17614 1.21728 0.99730 0.86041 1.00000 1.26649 1.07878 1.04320 1.04150 1.83790 1.46758 0.98180 1.38063 0.92549 0.93209 0.94468 0.91008 0.90978 0.90435 0.91159 0.74711 0.80724 0.80710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.63 13.97 55.49 0.78 -27.86 16 2 C 0.03 0.86 5.47 -17.43 -0.10 0.77 16 3 Si 0.90 22.63 24.74 -169.99 -4.21 18.43 16 4 H -0.28 -6.97 6.61 56.52 0.37 -6.60 16 5 H -0.27 -6.48 7.10 56.52 0.40 -6.08 16 6 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 7 C -0.24 -7.09 9.85 -15.06 -0.15 -7.23 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.58 -14.08 2.48 -163.87 -0.41 -14.49 16 10 C 0.11 2.36 6.22 -2.53 -0.02 2.35 16 11 C -0.13 -2.16 7.09 -24.58 -0.17 -2.33 16 12 C -0.12 -1.73 6.47 -24.89 -0.16 -1.90 16 13 C 0.15 2.89 3.52 -68.10 -0.24 2.65 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.48 9.67 6.70 -10.99 -0.07 9.60 16 16 O -0.44 -11.21 14.81 5.55 0.08 -11.13 16 17 N -0.64 -9.88 5.40 -13.07 -0.07 -9.95 16 18 C 0.29 4.71 8.02 -87.35 -0.70 4.01 16 19 N -0.48 -9.03 8.65 -15.12 -0.13 -9.16 16 20 C 0.08 1.09 11.34 -19.16 -0.22 0.87 16 21 C -0.29 -3.28 11.35 29.06 0.33 -2.95 16 22 S 0.08 0.95 23.22 -107.50 -2.50 -1.54 16 23 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 24 H 0.05 1.17 2.32 -51.93 -0.12 1.05 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 30 H 0.42 4.45 8.82 -40.82 -0.36 4.09 16 31 H 0.18 2.07 8.06 -52.48 -0.42 1.64 16 32 H 0.18 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 282.27 15.07 4.25 4.25 Total: -1.00 -37.37 282.27 -7.13 -44.50 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -3.43 Total: 1.11 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.50 Total: 5.83 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.17 Total: -61.45 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.21 Total: 18.43 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.50 Total: -1.54 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -37.37 -7.13 -44.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074314087.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.248 kcal (2) G-P(sol) polarization free energy of solvation -37.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds