Wall clock time and date at job start Mon Mar 30 2020 05:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47287 * 93.57819 * 3 2 1 5 5 H 1.48497 * 109.46956 * 213.58095 * 3 2 1 6 6 H 1.48497 * 109.46833 * 333.57584 * 3 2 1 7 7 C 1.38817 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99797 * 16.34595 * 7 2 1 9 9 N 1.36934 * 119.99855 * 196.34316 * 7 2 1 10 10 C 1.47427 * 125.64884 * 29.97503 * 9 7 2 11 11 C 1.54909 * 104.83069 * 204.08949 * 10 9 7 12 12 C 1.55159 * 101.58190 * 322.99013 * 11 10 9 13 13 C 1.47029 * 125.64632 * 209.66406 * 9 7 2 14 14 H 1.08994 * 109.88437 * 59.56301 * 13 9 7 15 15 C 1.50698 * 109.87942 * 298.39552 * 13 9 7 16 16 O 1.21286 * 120.00354 * 341.45402 * 15 13 9 17 17 N 1.34778 * 119.99849 * 161.45456 * 15 13 9 18 18 C 1.38998 * 120.00363 * 180.02562 * 17 15 13 19 19 N 1.29628 * 124.94298 * 359.69741 * 18 17 15 20 20 C 1.31983 * 116.91761 * 179.77217 * 19 18 17 21 21 C 1.33447 * 114.56691 * 0.51646 * 20 19 18 22 22 S 1.70970 * 124.94659 * 180.02562 * 18 17 15 23 23 H 0.96996 * 119.99965 * 0.02562 * 1 2 3 24 24 H 1.08995 * 110.36493 * 322.92388 * 10 9 7 25 25 H 1.08997 * 110.36630 * 85.25074 * 10 9 7 26 26 H 1.09001 * 111.00750 * 81.06562 * 11 10 9 27 27 H 1.09003 * 111.00225 * 204.91794 * 11 10 9 28 28 H 1.08995 * 110.71986 * 153.86778 * 12 11 10 29 29 H 1.09004 * 110.72057 * 276.96323 * 12 11 10 30 30 H 0.97010 * 119.99961 * 0.02562 * 17 15 13 31 31 H 1.08003 * 122.71987 * 180.22092 * 20 19 18 32 32 H 1.08003 * 125.96668 * 179.72790 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5734 2.0028 1.3973 5 1 3.5078 1.4632 -0.7744 6 1 1.4118 2.6733 -0.6230 7 6 2.0103 -1.2022 0.0005 8 1 1.5030 -2.1187 -0.2623 9 7 3.3381 -1.2259 0.3342 10 6 4.0072 -0.2975 1.2636 11 6 5.4972 -0.3179 0.8402 12 6 5.6911 -1.8082 0.4547 13 6 4.3313 -2.1857 -0.1700 14 1 4.3931 -2.1189 -1.2561 15 6 3.9466 -3.5840 0.2394 16 8 3.1606 -3.7556 1.1471 17 7 4.4759 -4.6440 -0.4030 18 6 4.1207 -5.9338 -0.0258 19 7 3.2965 -6.2272 0.9307 20 6 3.0690 -7.5084 1.1514 21 6 3.7409 -8.3373 0.3500 22 16 4.7134 -7.3643 -0.7506 23 1 -0.4850 0.8400 -0.0004 24 1 3.5966 0.7066 1.1578 25 1 3.8999 -0.6459 2.2908 26 1 5.6687 0.3330 -0.0172 27 1 6.1439 -0.0425 1.6733 28 1 6.4957 -1.9169 -0.2726 29 1 5.8890 -2.4129 1.3398 30 1 5.1049 -4.5067 -1.1287 31 1 2.3973 -7.8578 1.9216 32 1 3.6966 -9.4162 0.3724 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074314087.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:08 Heat of formation + Delta-G solvation = 35.360489 kcal Electronic energy + Delta-G solvation = -18203.196928 eV Core-core repulsion = 15291.406027 eV Total energy + Delta-G solvation = -2911.790901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.57314 -40.19176 -38.51120 -35.89093 -34.65743 -31.88565 -31.19659 -29.89786 -26.55083 -26.13790 -23.83233 -22.44766 -21.96065 -20.32772 -20.02019 -18.87709 -18.09758 -17.49797 -17.31552 -16.50711 -15.96292 -15.87112 -15.36331 -15.25843 -14.88358 -14.54421 -14.17094 -14.10222 -13.30737 -13.12572 -13.03918 -12.65695 -12.47251 -12.31750 -11.92359 -11.81752 -11.69420 -11.31976 -11.12100 -10.69871 -10.27433 -10.23113 -9.22585 -9.00254 -8.20970 -5.60631 -0.20929 0.03348 0.72505 1.29116 1.38304 1.52693 1.60658 1.99169 2.15563 2.39850 2.99224 3.24548 3.44865 3.78715 3.89616 4.09020 4.20966 4.38467 4.45090 4.57955 4.65747 4.84690 4.89890 4.95984 5.06203 5.10043 5.33807 5.38080 5.72208 6.05576 6.14796 6.70127 6.93876 7.31881 7.46148 8.02809 9.00069 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.030898 B = 0.005566 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.975668 B = 5029.225146 C = 5573.194076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.040 4.040 3 Si 0.977 3.023 4 H -0.276 1.276 5 H -0.240 1.240 6 H -0.310 1.310 7 C -0.232 4.232 8 H 0.026 0.974 9 N -0.598 5.598 10 C 0.093 3.907 11 C -0.120 4.120 12 C -0.103 4.103 13 C 0.140 3.860 14 H 0.095 0.905 15 C 0.485 3.515 16 O -0.513 6.513 17 N -0.628 5.628 18 C 0.242 3.758 19 N -0.543 5.543 20 C 0.036 3.964 21 C -0.265 4.265 22 S 0.185 5.815 23 H 0.264 0.736 24 H 0.037 0.963 25 H 0.017 0.983 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.068 0.932 30 H 0.438 0.562 31 H 0.185 0.815 32 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.238 -12.316 -3.947 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.234 4.234 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.164 1.164 6 H -0.239 1.239 7 C -0.361 4.361 8 H 0.044 0.956 9 N -0.322 5.322 10 C -0.030 4.030 11 C -0.157 4.157 12 C -0.141 4.141 13 C 0.028 3.972 14 H 0.112 0.888 15 C 0.268 3.732 16 O -0.382 6.382 17 N -0.283 5.283 18 C -0.125 4.125 19 N -0.266 5.266 20 C -0.114 4.114 21 C -0.405 4.405 22 S 0.433 5.567 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.152 0.848 29 H 0.087 0.913 30 H 0.279 0.721 31 H 0.201 0.799 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 18.893 -11.995 -3.825 22.703 hybrid contribution -1.404 0.337 0.776 1.639 sum 17.489 -11.658 -3.049 21.238 Atomic orbital electron populations 1.69985 1.07923 1.27642 1.55322 1.26045 0.96009 1.02095 0.99283 0.85432 0.78454 0.77768 0.77782 1.20378 1.16407 1.23895 1.18266 0.83994 0.92405 1.41460 0.95620 1.44529 1.04835 1.33921 1.48903 1.22329 0.94672 0.93212 0.92812 1.22787 0.93145 0.96798 1.03010 1.22586 0.93465 0.96193 1.01892 1.21390 0.91553 0.84330 0.99889 0.88790 1.23166 0.80058 0.88170 0.81767 1.90772 1.32067 1.85696 1.29652 1.43439 1.46497 1.00663 1.37722 1.24328 0.98404 0.93008 0.96781 1.66530 1.18917 1.21647 1.19514 1.21924 1.01949 0.85372 1.02124 1.27285 1.05110 1.06183 1.01900 1.83379 1.44106 0.93840 1.35346 0.92698 0.94578 0.96468 0.89382 0.87567 0.84841 0.91332 0.72088 0.79861 0.76663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.61 13.97 21.65 0.30 -64.31 16 2 C -0.04 -2.48 5.47 84.86 0.46 -2.02 16 3 Si 0.98 47.79 24.74 68.60 1.70 49.49 16 4 H -0.28 -12.96 6.61 99.48 0.66 -12.31 16 5 H -0.24 -10.40 7.10 99.48 0.71 -9.69 16 6 H -0.31 -15.25 7.11 99.48 0.71 -14.55 16 7 C -0.23 -14.39 9.85 84.04 0.83 -13.56 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 N -0.60 -29.63 2.48 -672.37 -1.66 -31.30 16 10 C 0.09 3.99 6.22 86.85 0.54 4.53 16 11 C -0.12 -3.33 7.09 31.99 0.23 -3.10 16 12 C -0.10 -2.61 6.47 31.79 0.21 -2.40 16 13 C 0.14 5.16 3.52 44.60 0.16 5.32 16 14 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 15 C 0.49 19.88 6.70 87.66 0.59 20.47 16 16 O -0.51 -27.89 14.81 -3.05 -0.05 -27.93 16 17 N -0.63 -18.92 5.40 -313.64 -1.69 -20.62 16 18 C 0.24 7.65 8.02 179.20 1.44 9.09 16 19 N -0.54 -20.93 8.65 -201.75 -1.75 -22.67 16 20 C 0.04 1.03 11.34 83.58 0.95 1.98 16 21 C -0.26 -5.22 11.35 66.73 0.76 -4.47 16 22 S 0.18 3.57 23.22 -56.49 -1.31 2.26 16 23 H 0.26 16.60 8.31 -92.71 -0.77 15.83 16 24 H 0.04 1.64 2.32 -2.39 -0.01 1.63 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.78 7.84 -2.39 -0.02 1.76 16 30 H 0.44 8.35 8.82 -92.70 -0.82 7.53 16 31 H 0.18 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.22 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -92.18 282.27 1.98 -90.20 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.29 Total: 9.04 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 6.15 Total: 15.83 kcal Atomic # 7 Polarization: -134.09 SS G_CDS: -4.80 Total: -138.89 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.70 Total: 49.49 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.31 Total: 2.26 kcal Total: -92.18 1.98 -90.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074314087.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.564 kcal (2) G-P(sol) polarization free energy of solvation -92.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds