Wall clock time and date at job start Mon Mar 30 2020 04:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36542 * 127.14562 * 2 1 4 4 S 1.76192 * 126.48290 * 0.02562 * 3 2 1 5 5 C 1.81001 * 100.00087 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47158 * 180.02562 * 5 4 3 7 7 H 1.08007 * 120.00051 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00192 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99445 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00259 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47539 * 89.99548 * 10 8 6 12 12 H 1.48505 * 109.47133 * 209.99911 * 10 8 6 13 13 H 1.48505 * 109.47253 * 329.99492 * 10 8 6 14 14 N 1.31279 * 107.03065 * 180.02562 * 3 2 1 15 15 N 1.28524 * 109.86182 * 359.97438 * 14 3 2 16 16 C 1.30305 * 110.07735 * 0.02562 * 15 14 3 17 17 C 1.50700 * 126.34163 * 179.97438 * 16 15 14 18 18 F 1.39898 * 109.47078 * 15.02432 * 17 16 15 19 19 F 1.39899 * 109.46894 * 135.03174 * 17 16 15 20 20 F 1.39902 * 109.47040 * 255.02402 * 17 16 15 21 21 H 1.08998 * 109.47077 * 89.97520 * 1 2 3 22 22 H 1.09005 * 109.47159 * 209.97765 * 1 2 3 23 23 H 1.09004 * 109.46609 * 329.97204 * 1 2 3 24 24 H 1.09000 * 109.46608 * 299.99574 * 5 4 3 25 25 H 1.08995 * 109.46795 * 60.00035 * 5 4 3 26 26 H 0.97002 * 119.99299 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2895 1.0884 0.0000 4 16 1.7929 2.7789 0.0006 5 6 3.4145 3.5829 -0.0005 6 6 3.2335 5.0789 0.0005 7 1 2.2400 5.5027 0.0013 8 6 4.3360 5.9068 -0.0007 9 7 5.5458 5.3908 -0.0022 10 14 4.1116 7.7612 -0.0002 11 1 4.0537 8.2525 1.3999 12 1 5.2551 8.3984 -0.7015 13 1 2.8476 8.1071 -0.6988 14 7 3.5222 0.6369 -0.0006 15 7 3.5165 -0.6483 -0.0004 16 6 2.2907 -1.0902 -0.0002 17 6 1.8623 -2.5350 -0.0005 18 9 2.9511 -3.3444 0.3409 19 9 0.8352 -2.7170 0.9318 20 9 1.4026 -2.8849 -1.2747 21 1 -0.3633 0.0004 -1.0276 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5143 24 1 3.9689 3.2838 0.8890 25 1 3.9675 3.2840 -0.8910 26 1 6.3214 5.9732 -0.0026 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075321961.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:53 Heat of formation + Delta-G solvation = -75.693436 kcal Electronic energy + Delta-G solvation = -17777.157361 eV Core-core repulsion = 14182.860965 eV Total energy + Delta-G solvation = -3594.296395 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.035 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.48226 -48.04386 -47.93055 -42.92765 -35.15772 -33.29659 -31.62419 -28.78365 -27.97005 -26.47324 -23.43423 -22.70621 -21.79984 -18.91394 -18.70853 -18.64867 -17.37304 -16.44632 -16.31803 -15.94240 -14.86747 -14.79580 -14.70810 -14.41202 -14.18218 -14.08190 -13.63180 -13.53565 -13.33269 -12.67117 -12.53787 -12.49168 -11.69064 -11.01933 -10.98309 -10.77884 -10.45318 -10.37580 -10.08293 -9.79986 -9.43641 -8.71982 -7.20550 -6.29454 -4.39231 1.30671 1.36480 1.97712 2.62042 2.67106 3.17675 3.19682 3.25652 3.26135 3.31795 3.73308 4.03230 4.24786 4.42494 4.87280 5.06456 5.07099 5.18001 5.44946 5.76328 6.37742 6.95770 7.07135 7.56085 7.80233 8.48900 8.61440 9.25357 10.80679 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.048798 B = 0.004385 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.657557 B = 6383.558593 C = 6772.126998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.450 5.450 3 C 0.206 3.794 4 S -0.030 6.030 5 C 0.074 3.926 6 C -0.531 4.531 7 H 0.068 0.932 8 C 0.073 3.927 9 N -0.879 5.879 10 Si 0.910 3.090 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.270 1.270 14 N -0.280 5.280 15 N -0.214 5.214 16 C 0.050 3.950 17 C 0.577 3.423 18 F -0.148 7.148 19 F -0.169 7.169 20 F -0.165 7.165 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.105 0.895 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 -12.699 0.060 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.145 5.145 3 C -0.165 4.165 4 S 0.200 5.800 5 C -0.073 4.073 6 C -0.571 4.571 7 H 0.087 0.913 8 C -0.134 4.134 9 N -0.515 5.515 10 Si 0.736 3.264 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.195 1.195 14 N -0.126 5.126 15 N -0.058 5.058 16 C -0.219 4.219 17 C 0.519 3.481 18 F -0.129 7.129 19 F -0.151 7.151 20 F -0.146 7.146 21 H 0.109 0.891 22 H 0.114 0.886 23 H 0.123 0.877 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.042 -12.222 0.056 16.472 hybrid contribution -0.264 0.126 0.001 0.292 sum -11.306 -12.096 0.057 16.557 Atomic orbital electron populations 1.22375 0.74301 1.06209 1.05038 1.46127 1.08925 1.04008 1.55447 1.27897 0.89124 0.97376 1.02143 1.85647 1.21361 0.83193 1.89762 1.21476 0.85581 0.97283 1.02958 1.20537 0.93685 0.87973 1.54908 0.91349 1.24943 0.94639 0.99582 0.94188 1.69979 0.97860 1.35995 1.47664 0.86311 0.78101 0.83531 0.78463 1.20192 1.20778 1.19499 1.75015 1.15735 1.00617 1.21282 1.74016 1.15451 1.04633 1.11666 1.24176 0.89855 0.89901 1.18002 1.16308 0.74950 0.82656 0.74168 1.93275 1.53974 1.73758 1.91921 1.93210 1.60009 1.95761 1.66109 1.93268 1.88957 1.92824 1.39592 0.89123 0.88557 0.87694 0.92524 0.92501 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 10.90 59.85 0.65 1.28 15 2 N -0.45 -6.98 3.21 -120.90 -0.39 -7.37 15 3 C 0.21 3.98 8.07 -88.34 -0.71 3.27 15 4 S -0.03 -0.58 21.73 -107.50 -2.34 -2.91 15 5 C 0.07 1.85 4.99 36.00 0.18 2.03 15 6 C -0.53 -13.99 9.13 -34.44 -0.31 -14.30 15 7 H 0.07 1.73 7.71 -52.48 -0.40 1.33 15 8 C 0.07 1.95 5.46 -17.82 -0.10 1.85 15 9 N -0.88 -24.94 13.29 55.43 0.74 -24.20 15 10 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 15 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 14 N -0.28 -6.14 11.60 30.68 0.36 -5.79 15 15 N -0.21 -4.27 12.01 33.00 0.40 -3.87 15 16 C 0.05 0.82 7.36 -153.99 -1.13 -0.31 15 17 C 0.58 7.44 3.37 36.01 0.12 7.56 15 18 F -0.15 -2.00 17.18 2.25 0.04 -1.96 15 19 F -0.17 -1.88 15.54 2.25 0.04 -1.85 15 20 F -0.17 -1.99 17.30 2.25 0.04 -1.95 15 21 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.10 0.77 6.38 -51.93 -0.33 0.44 15 23 H 0.10 0.96 7.86 -51.93 -0.41 0.55 15 24 H 0.06 1.52 8.14 -51.92 -0.42 1.10 15 25 H 0.06 1.53 8.14 -51.92 -0.42 1.10 15 26 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 266.67 15.07 4.02 4.02 Total: -1.00 -29.60 266.67 -4.98 -34.58 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: -1.55 Total: -5.35 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.30 Total: 1.38 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 1.10 Total: -41.23 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.11 Total: -5.76 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -2.34 Total: -2.91 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.60 -4.98 -34.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321961.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.116 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds