Wall clock time and date at job start Mon Mar 30 2020 04:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00225 * 2 1 4 4 H 1.48498 * 109.47160 * 270.00576 * 3 2 1 5 5 H 1.48503 * 109.47305 * 30.00115 * 3 2 1 6 6 H 1.48497 * 109.47183 * 150.00207 * 3 2 1 7 7 C 1.37872 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00420 * 0.02562 * 7 2 1 9 9 S 1.76204 * 120.00069 * 179.97438 * 7 2 1 10 10 O 1.42102 * 106.39813 * 66.46033 * 9 7 2 11 11 O 1.42095 * 106.40430 * 293.54661 * 9 7 2 12 12 N 1.65597 * 107.22053 * 180.02562 * 9 7 2 13 13 C 1.37901 * 119.99885 * 65.00671 * 12 9 7 14 14 N 1.30969 * 125.06306 * 14.96915 * 13 12 9 15 15 C 1.35905 * 109.62016 * 180.02562 * 14 13 12 16 16 C 1.39706 * 133.39922 * 179.97438 * 15 14 13 17 17 C 1.37693 * 119.77709 * 179.72275 * 16 15 14 18 18 C 1.38705 * 120.49502 * 0.25858 * 17 16 15 19 19 C 1.37968 * 120.43220 * 0.02562 * 18 17 16 20 20 C 1.38654 * 119.85135 * 0.02562 * 19 18 17 21 21 N 1.36558 * 125.06334 * 195.61337 * 13 12 9 22 22 H 0.96999 * 126.36971 * 359.36440 * 21 13 12 23 23 H 0.97000 * 119.99903 * 359.97438 * 1 2 3 24 24 H 0.96998 * 119.99967 * 245.00238 * 12 9 7 25 25 H 1.08002 * 120.11494 * 0.02562 * 16 15 14 26 26 H 1.07999 * 119.75001 * 180.28322 * 17 16 15 27 27 H 1.08000 * 119.78294 * 180.02562 * 18 17 16 28 28 H 1.08002 * 120.07181 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 16 3.7665 -1.1942 -0.0012 10 8 4.1682 -0.6501 1.2485 11 8 4.1673 -0.6494 -1.2509 12 7 4.2566 -2.7760 -0.0025 13 6 3.9783 -3.5832 -1.0853 14 7 3.5915 -3.1570 -2.2618 15 6 3.4058 -4.2164 -3.0926 16 6 3.0054 -4.3319 -4.4261 17 6 2.9142 -5.5768 -5.0073 18 6 3.2117 -6.7180 -4.2771 19 6 3.6029 -6.6212 -2.9576 20 6 3.6991 -5.3757 -2.3559 21 7 4.0529 -4.9467 -1.0871 22 1 4.3151 -5.5094 -0.3418 23 1 -0.4850 0.8401 0.0004 24 1 4.7395 -3.1347 0.7584 25 1 2.7730 -3.4474 -5.0006 26 1 2.6091 -5.6652 -6.0395 27 1 3.1367 -7.6886 -4.7446 28 1 3.8328 -7.5136 -2.3945 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082457913.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:15 Heat of formation + Delta-G solvation = 3.390118 kcal Electronic energy + Delta-G solvation = -17874.956420 eV Core-core repulsion = 14825.946086 eV Total energy + Delta-G solvation = -3049.010335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.80118 -37.34700 -35.76218 -34.57278 -34.27856 -33.02779 -32.87356 -29.73125 -28.30899 -26.43715 -22.64727 -22.19668 -21.37179 -19.29292 -18.35057 -17.80924 -17.18767 -16.64007 -16.02569 -15.40928 -14.91187 -14.38056 -14.09002 -13.97984 -13.68643 -13.41829 -12.90539 -12.15280 -12.02083 -11.77720 -11.38284 -11.29819 -10.96994 -10.76943 -10.68068 -10.53152 -10.18617 -9.98163 -9.49219 -9.20376 -9.02589 -8.12669 -7.59127 -6.79508 -5.33987 1.19893 1.59087 1.69706 2.98674 3.08952 3.10298 3.19715 3.25460 3.76745 3.95433 4.12328 4.58516 4.64434 4.96288 5.14734 5.19174 5.32872 5.45277 5.64357 5.79659 5.88233 6.04914 6.22487 6.59186 6.67577 6.71327 6.89752 7.09413 7.47423 7.64508 8.18302 8.22817 8.69116 10.32963 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.030969 B = 0.006561 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.912873 B = 4266.346728 C = 4659.191288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.156 3.844 3 Si 0.803 3.197 4 H -0.243 1.243 5 H -0.254 1.254 6 H -0.223 1.223 7 C -0.998 4.998 8 H 0.120 0.880 9 S 2.665 3.335 10 O -0.994 6.994 11 O -0.963 6.963 12 N -1.017 6.017 13 C 0.543 3.457 14 N -0.486 5.486 15 C 0.080 3.920 16 C -0.068 4.068 17 C -0.128 4.128 18 C -0.117 4.117 19 C -0.108 4.108 20 C 0.041 3.959 21 N -0.615 5.615 22 H 0.419 0.581 23 H 0.282 0.718 24 H 0.423 0.577 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 -12.480 -4.020 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.064 4.064 3 Si 0.623 3.377 4 H -0.166 1.166 5 H -0.178 1.178 6 H -0.145 1.145 7 C -1.133 5.133 8 H 0.138 0.862 9 S 2.767 3.233 10 O -0.984 6.984 11 O -0.953 6.953 12 N -0.763 5.763 13 C 0.185 3.815 14 N -0.213 5.213 15 C -0.039 4.039 16 C -0.088 4.088 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.129 4.129 20 C -0.068 4.068 21 N -0.235 5.235 22 H 0.258 0.742 23 H 0.092 0.908 24 H 0.258 0.742 25 H 0.150 0.850 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.654 -10.660 -4.382 13.308 hybrid contribution 0.021 -0.884 1.238 1.522 sum 6.675 -11.544 -3.144 13.701 Atomic orbital electron populations 1.69976 1.06517 1.29080 1.39267 1.24363 0.94802 0.98657 0.88609 0.87853 0.83295 0.84511 0.82069 1.16627 1.17835 1.14486 1.30059 1.14040 1.02356 1.66869 0.86190 1.02154 0.78162 0.69280 0.73749 1.93527 1.85913 1.73420 1.45501 1.93487 1.84771 1.73020 1.43985 1.53373 1.69148 1.31500 1.22296 1.19105 0.95253 0.78575 0.88599 1.71102 1.24465 1.27824 0.97931 1.18969 1.02417 0.87546 0.94967 1.20314 0.98806 0.98179 0.91543 1.20821 1.02390 0.91672 0.99979 1.20748 1.01233 0.98531 0.93212 1.19810 1.04435 0.93304 0.95362 1.18663 1.06146 0.96608 0.85351 1.42967 1.61815 1.06363 1.12322 0.74232 0.90799 0.74221 0.85027 0.85581 0.85697 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.87 13.96 55.43 0.77 -23.10 15 2 C 0.16 4.50 5.47 -17.82 -0.10 4.41 15 3 Si 0.80 20.58 26.54 -169.99 -4.51 16.07 15 4 H -0.24 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.25 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.22 -5.72 5.61 56.52 0.32 -5.40 15 7 C -1.00 -28.24 10.21 30.60 0.31 -27.93 15 8 H 0.12 3.50 8.06 -52.48 -0.42 3.08 15 9 S 2.66 66.62 4.06 -107.50 -0.44 66.19 15 10 O -0.99 -25.60 16.02 -57.17 -0.92 -26.52 15 11 O -0.96 -26.33 15.69 -57.17 -0.90 -27.23 15 12 N -1.02 -19.41 5.83 30.15 0.18 -19.23 15 13 C 0.54 10.62 8.64 -320.02 -2.77 7.85 15 14 N -0.49 -10.95 9.99 -11.52 -0.12 -11.06 15 15 C 0.08 1.52 7.22 -84.68 -0.61 0.91 15 16 C -0.07 -1.09 10.10 -39.23 -0.40 -1.49 15 17 C -0.13 -1.58 10.01 -39.61 -0.40 -1.98 15 18 C -0.12 -1.32 10.03 -39.51 -0.40 -1.72 15 19 C -0.11 -1.33 10.06 -39.53 -0.40 -1.73 15 20 C 0.04 0.65 7.30 -83.85 -0.61 0.04 15 21 N -0.62 -9.18 6.27 -11.18 -0.07 -9.25 15 22 H 0.42 4.31 8.96 -40.82 -0.37 3.95 15 23 H 0.28 7.41 8.31 -40.82 -0.34 7.07 15 24 H 0.42 5.97 8.95 -34.47 -0.31 5.66 15 25 H 0.13 2.00 8.06 -52.49 -0.42 1.58 15 26 H 0.13 1.17 8.06 -52.49 -0.42 0.75 15 27 H 0.13 1.00 8.06 -52.49 -0.42 0.58 15 28 H 0.12 1.10 8.06 -52.49 -0.42 0.67 15 LS Contribution 263.72 15.07 3.97 3.97 Total: -1.00 -35.74 263.72 -9.39 -45.13 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -2.01 Total: 6.66 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -5.36 Total: -21.63 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.76 Total: -62.65 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -1.81 Total: -53.74 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.51 Total: 16.07 kcal Atomic # 16 Polarization: 66.62 SS G_CDS: -0.44 Total: 66.19 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -35.74 -9.39 -45.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082457913.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.522 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds