Wall clock time and date at job start Mon Mar 30 2020 04:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00225 * 2 1 4 4 H 1.48498 * 109.47160 * 270.00576 * 3 2 1 5 5 H 1.48503 * 109.47305 * 30.00115 * 3 2 1 6 6 H 1.48497 * 109.47183 * 150.00207 * 3 2 1 7 7 C 1.37872 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00420 * 0.02562 * 7 2 1 9 9 S 1.76204 * 120.00069 * 179.97438 * 7 2 1 10 10 O 1.42102 * 106.39813 * 66.46033 * 9 7 2 11 11 O 1.42095 * 106.40430 * 293.54661 * 9 7 2 12 12 N 1.65597 * 107.22053 * 180.02562 * 9 7 2 13 13 C 1.37901 * 119.99885 * 65.00671 * 12 9 7 14 14 N 1.30969 * 125.06306 * 14.96915 * 13 12 9 15 15 C 1.35905 * 109.62016 * 180.02562 * 14 13 12 16 16 C 1.39706 * 133.39922 * 179.97438 * 15 14 13 17 17 C 1.37693 * 119.77709 * 179.72275 * 16 15 14 18 18 C 1.38705 * 120.49502 * 0.25858 * 17 16 15 19 19 C 1.37968 * 120.43220 * 0.02562 * 18 17 16 20 20 C 1.38654 * 119.85135 * 0.02562 * 19 18 17 21 21 N 1.36558 * 125.06334 * 195.61337 * 13 12 9 22 22 H 0.96999 * 126.36971 * 359.36440 * 21 13 12 23 23 H 0.97000 * 119.99903 * 359.97438 * 1 2 3 24 24 H 0.96998 * 119.99967 * 245.00238 * 12 9 7 25 25 H 1.08002 * 120.11494 * 0.02562 * 16 15 14 26 26 H 1.07999 * 119.75001 * 180.28322 * 17 16 15 27 27 H 1.08000 * 119.78294 * 180.02562 * 18 17 16 28 28 H 1.08002 * 120.07181 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 16 3.7665 -1.1942 -0.0012 10 8 4.1682 -0.6501 1.2485 11 8 4.1673 -0.6494 -1.2509 12 7 4.2566 -2.7760 -0.0025 13 6 3.9783 -3.5832 -1.0853 14 7 3.5915 -3.1570 -2.2618 15 6 3.4058 -4.2164 -3.0926 16 6 3.0054 -4.3319 -4.4261 17 6 2.9142 -5.5768 -5.0073 18 6 3.2117 -6.7180 -4.2771 19 6 3.6029 -6.6212 -2.9576 20 6 3.6991 -5.3757 -2.3559 21 7 4.0529 -4.9467 -1.0871 22 1 4.3151 -5.5094 -0.3418 23 1 -0.4850 0.8401 0.0004 24 1 4.7395 -3.1347 0.7584 25 1 2.7730 -3.4474 -5.0006 26 1 2.6091 -5.6652 -6.0395 27 1 3.1367 -7.6886 -4.7446 28 1 3.8328 -7.5136 -2.3945 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082457913.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:14 Heat of formation + Delta-G solvation = -24.040019 kcal Electronic energy + Delta-G solvation = -17876.145880 eV Core-core repulsion = 14825.946086 eV Total energy + Delta-G solvation = -3050.199795 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.06988 -38.52243 -37.80259 -36.64457 -35.75511 -35.19343 -34.16129 -30.84126 -29.51779 -28.61748 -23.91952 -23.38496 -22.71986 -21.14837 -19.77156 -19.62461 -18.87206 -18.16403 -17.36711 -17.20345 -16.49869 -16.08973 -15.52544 -15.36340 -15.14339 -15.00321 -14.75544 -13.89335 -13.49950 -13.41243 -13.03662 -12.78577 -12.77392 -12.62681 -12.37627 -12.08884 -11.92962 -11.56437 -11.35013 -11.12077 -10.85476 -9.22927 -8.97908 -8.88050 -7.55094 -0.31974 0.07781 0.60370 1.04257 1.15975 1.19339 1.60779 1.79270 1.88476 2.31622 2.41371 2.97526 3.14067 3.24774 3.76941 4.06863 4.19530 4.26958 4.45281 4.57661 4.60321 4.92448 5.15157 5.33119 5.46884 5.51802 5.64289 5.67985 5.95082 6.04962 6.48687 6.49955 6.88751 8.20638 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.030969 B = 0.006561 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.912873 B = 4266.346728 C = 4659.191288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.109 3.891 3 Si 0.829 3.171 4 H -0.241 1.241 5 H -0.215 1.215 6 H -0.224 1.224 7 C -1.023 5.023 8 H 0.096 0.904 9 S 2.702 3.298 10 O -1.002 7.002 11 O -0.990 6.990 12 N -1.004 6.004 13 C 0.517 3.483 14 N -0.546 5.546 15 C 0.026 3.974 16 C -0.100 4.100 17 C -0.114 4.114 18 C -0.101 4.101 19 C -0.103 4.103 20 C 0.037 3.963 21 N -0.590 5.590 22 H 0.440 0.560 23 H 0.293 0.707 24 H 0.445 0.555 25 H 0.121 0.879 26 H 0.161 0.839 27 H 0.172 0.828 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.213 -14.894 -4.589 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.108 4.108 3 Si 0.645 3.355 4 H -0.165 1.165 5 H -0.137 1.137 6 H -0.146 1.146 7 C -1.156 5.156 8 H 0.114 0.886 9 S 2.801 3.199 10 O -0.992 6.992 11 O -0.980 6.980 12 N -0.757 5.757 13 C 0.158 3.842 14 N -0.275 5.275 15 C -0.091 4.091 16 C -0.120 4.120 17 C -0.134 4.134 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.072 4.072 21 N -0.212 5.212 22 H 0.283 0.717 23 H 0.103 0.897 24 H 0.284 0.716 25 H 0.139 0.861 26 H 0.178 0.822 27 H 0.190 0.810 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.407 -13.108 -4.921 15.840 hybrid contribution -0.245 -0.385 1.260 1.340 sum 7.163 -13.493 -3.661 15.709 Atomic orbital electron populations 1.70006 1.07534 1.30602 1.40126 1.25155 0.95697 1.01485 0.88419 0.87446 0.82936 0.82475 0.82633 1.16491 1.13666 1.14647 1.30578 1.16804 1.01557 1.66657 0.88574 1.00847 0.76205 0.70101 0.72781 1.93503 1.85414 1.74760 1.45562 1.93451 1.84471 1.74867 1.45180 1.52499 1.69396 1.30343 1.23465 1.18926 0.96933 0.80277 0.88027 1.70877 1.25732 1.31001 0.99842 1.19440 1.05243 0.88093 0.96361 1.20560 1.00648 0.99781 0.91025 1.21277 1.00136 0.90485 1.01505 1.21373 0.98127 0.99988 0.92580 1.20360 1.02993 0.92992 0.96039 1.19058 1.06080 0.97054 0.85000 1.42680 1.60771 1.04717 1.13010 0.71657 0.89698 0.71606 0.86137 0.82180 0.81015 0.82382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.76 13.96 21.45 0.30 -50.46 15 2 C 0.11 6.46 5.47 84.65 0.46 6.92 15 3 Si 0.83 41.76 26.54 68.60 1.82 43.58 15 4 H -0.24 -12.03 7.11 99.48 0.71 -11.32 15 5 H -0.21 -9.40 7.11 99.48 0.71 -8.70 15 6 H -0.22 -11.31 5.61 99.48 0.56 -10.76 15 7 C -1.02 -59.88 10.21 67.73 0.69 -59.19 15 8 H 0.10 5.91 8.06 -2.91 -0.02 5.89 15 9 S 2.70 137.36 4.06 -56.49 -0.23 137.13 15 10 O -1.00 -51.58 16.02 -128.00 -2.05 -53.63 15 11 O -0.99 -55.47 15.69 -128.00 -2.01 -57.48 15 12 N -1.00 -38.77 5.83 -58.53 -0.34 -39.11 15 13 C 0.52 20.57 8.64 260.51 2.25 22.82 15 14 N -0.55 -25.59 9.99 -190.35 -1.90 -27.49 15 15 C 0.03 1.02 7.22 39.41 0.28 1.30 15 16 C -0.10 -3.22 10.10 22.50 0.23 -2.99 15 17 C -0.11 -2.48 10.01 22.25 0.22 -2.25 15 18 C -0.10 -1.78 10.03 22.32 0.22 -1.55 15 19 C -0.10 -2.11 10.06 22.30 0.22 -1.89 15 20 C 0.04 1.12 7.30 38.72 0.28 1.40 15 21 N -0.59 -17.03 6.27 -189.29 -1.19 -18.22 15 22 H 0.44 8.18 8.96 -92.71 -0.83 7.35 15 23 H 0.29 15.59 8.31 -92.71 -0.77 14.82 15 24 H 0.44 12.33 8.95 -96.75 -0.87 11.47 15 25 H 0.12 3.92 8.06 -2.91 -0.02 3.89 15 26 H 0.16 2.32 8.06 -2.91 -0.02 2.30 15 27 H 0.17 1.52 8.06 -2.91 -0.02 1.49 15 28 H 0.16 2.00 8.06 -2.91 -0.02 1.97 15 Total: -1.00 -81.34 263.72 -1.34 -82.68 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.61 Total: 18.41 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 4.87 Total: -35.43 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -3.13 Total: -135.29 kcal Atomic # 8 Polarization: -107.04 SS G_CDS: -4.06 Total: -111.10 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.82 Total: 43.58 kcal Atomic # 16 Polarization: 137.36 SS G_CDS: -0.23 Total: 137.13 kcal Total: -81.34 -1.34 -82.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082457913.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.645 kcal (2) G-P(sol) polarization free energy of solvation -81.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds