Wall clock time and date at job start Mon Mar 30 2020 04:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86799 * 119.99608 * 2 1 4 4 H 1.48492 * 109.47316 * 270.00034 * 3 2 1 5 5 H 1.48503 * 109.47050 * 30.00669 * 3 2 1 6 6 H 1.48505 * 109.46730 * 150.00238 * 3 2 1 7 7 C 1.38798 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99296 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00333 * 359.97438 * 7 2 1 10 10 C 1.80991 * 100.00163 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47439 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99850 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00613 * 179.97438 * 11 10 9 14 14 C 1.39918 * 120.00146 * 185.27544 * 13 11 10 15 15 C 1.38869 * 120.07176 * 33.29544 * 14 13 11 16 16 C 1.38114 * 119.93014 * 180.02562 * 15 14 13 17 17 C 1.38289 * 120.07012 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.92912 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47097 * 90.00265 * 18 17 16 20 20 C 1.38274 * 120.13758 * 0.25935 * 17 16 15 21 21 C 1.38112 * 120.07482 * 359.49064 * 20 17 16 22 22 H 0.97000 * 120.00551 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47295 * 60.00360 * 10 9 7 24 24 H 1.09001 * 109.47536 * 300.00051 * 10 9 7 25 25 H 0.96997 * 119.99223 * 5.27490 * 13 11 10 26 26 H 1.08005 * 120.03707 * 359.97438 * 15 14 13 27 27 H 1.08000 * 119.96855 * 179.97438 * 16 15 14 28 28 H 1.09003 * 109.46633 * 330.00376 * 18 17 16 29 29 H 1.08997 * 109.46849 * 210.00397 * 18 17 16 30 30 H 0.96699 * 113.99949 * 180.02562 * 19 18 17 31 31 H 1.08002 * 119.96502 * 179.74452 * 20 17 16 32 32 H 1.08000 * 120.03994 * 180.25868 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9876 -5.3026 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 -0.0003 14 6 2.3575 -7.6502 -0.1111 15 6 1.2227 -7.9082 -0.8688 16 6 0.7444 -9.1994 -0.9758 17 6 1.3947 -10.2349 -0.3298 18 6 0.8697 -11.6426 -0.4482 19 8 1.4736 -12.2830 -1.5738 20 6 2.5221 -9.9806 0.4293 21 6 3.0084 -8.6923 0.5361 22 1 -0.4851 0.8400 0.0004 23 1 3.1245 -3.7313 0.8895 24 1 3.1246 -3.7313 -0.8905 25 1 3.7983 -6.1856 0.0762 26 1 0.7141 -7.0998 -1.3732 27 1 -0.1383 -9.4007 -1.5645 28 1 -0.2118 -11.6169 -0.5817 29 1 1.1109 -12.1977 0.4583 30 1 1.1811 -13.1944 -1.7115 31 1 3.0253 -10.7908 0.9360 32 1 3.8914 -8.4949 1.1257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082878795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:17 Heat of formation + Delta-G solvation = -60.911314 kcal Electronic energy + Delta-G solvation = -16722.966529 eV Core-core repulsion = 13774.708219 eV Total energy + Delta-G solvation = -2948.258311 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.35512 -38.63242 -36.77488 -34.56826 -32.47034 -31.06769 -30.97601 -28.96881 -25.68707 -25.30972 -23.04569 -21.64780 -20.26697 -18.12701 -17.68476 -17.47225 -16.55518 -15.87236 -15.59852 -14.87702 -14.84069 -14.48136 -13.95050 -13.89888 -13.38784 -13.33594 -13.19928 -12.69708 -12.60774 -12.09945 -11.37878 -11.28560 -11.09309 -11.06258 -10.80434 -10.33202 -10.22973 -9.87389 -9.54358 -9.10492 -8.92259 -8.31286 -8.05423 -6.56175 -6.25831 -3.97396 1.17219 1.40489 2.87484 2.89469 3.20227 3.24908 3.28752 3.58770 3.68138 4.15882 4.30493 4.69013 4.82457 4.92890 5.01357 5.09464 5.09677 5.17496 5.36814 5.49639 5.64212 5.67909 5.77671 5.99901 6.04317 6.21587 6.35182 6.52543 6.57377 7.04104 7.34582 7.48456 7.55861 8.30995 8.37701 9.19572 10.81604 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.065980 B = 0.003178 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.266664 B = 8808.723147 C = 9081.827862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.495 6.495 13 N -0.682 5.682 14 C 0.167 3.833 15 C -0.125 4.125 16 C -0.077 4.077 17 C -0.122 4.122 18 C 0.121 3.879 19 O -0.569 6.569 20 C -0.080 4.080 21 C -0.156 4.156 22 H 0.269 0.731 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.410 0.590 26 H 0.140 0.860 27 H 0.125 0.875 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.377 0.623 31 H 0.123 0.877 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 -20.892 -0.037 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.367 6.367 13 N -0.328 5.328 14 C 0.072 3.928 15 C -0.146 4.146 16 C -0.096 4.096 17 C -0.123 4.123 18 C 0.044 3.956 19 O -0.374 6.374 20 C -0.099 4.099 21 C -0.176 4.176 22 H 0.079 0.921 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.246 0.754 26 H 0.158 0.842 27 H 0.143 0.857 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.224 0.776 31 H 0.141 0.859 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.144 -20.429 -0.089 20.845 hybrid contribution 2.177 0.883 0.177 2.356 sum 6.321 -19.546 0.089 20.543 Atomic orbital electron populations 1.70013 1.05967 1.27561 1.46694 1.25002 0.95049 0.99090 0.94442 0.86146 0.79388 0.81448 0.78383 1.20228 1.20722 1.19675 1.22854 0.94932 0.91512 1.59193 0.90825 1.85415 1.04499 0.96364 1.96758 1.23550 1.06977 0.94587 1.05361 1.20554 0.86522 0.86303 0.74752 1.90722 1.15204 1.85259 1.45510 1.43736 1.10975 1.03945 1.74159 1.17854 0.95531 0.84089 0.95333 1.21244 0.96981 0.97457 0.98888 1.20917 0.99303 0.91724 0.97645 1.19512 0.97620 0.94102 1.01018 1.20933 0.95898 0.90243 0.88524 1.86592 1.70326 1.30982 1.49536 1.20738 0.95013 0.95984 0.98159 1.20851 1.02461 0.92471 1.01843 0.92112 0.88830 0.88695 0.75439 0.84248 0.85739 0.92819 0.92957 0.77612 0.85888 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 10 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 11 C 0.53 9.77 7.59 -10.98 -0.08 9.69 16 12 O -0.49 -10.92 13.55 5.55 0.08 -10.85 16 13 N -0.68 -9.57 5.34 -9.86 -0.05 -9.62 16 14 C 0.17 2.38 6.28 -83.70 -0.53 1.85 16 15 C -0.13 -1.91 8.66 -39.39 -0.34 -2.25 16 16 C -0.08 -1.01 9.69 -39.61 -0.38 -1.39 16 17 C -0.12 -1.42 5.51 -104.59 -0.58 -2.00 16 18 C 0.12 1.06 7.17 36.01 0.26 1.32 16 19 O -0.57 -5.25 13.64 -35.23 -0.48 -5.73 16 20 C -0.08 -0.89 9.69 -39.61 -0.38 -1.27 16 21 C -0.16 -1.83 9.96 -39.39 -0.39 -2.22 16 22 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 24 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 25 H 0.41 4.26 8.82 -40.82 -0.36 3.90 16 26 H 0.14 2.39 6.41 -52.48 -0.34 2.05 16 27 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.38 1.52 9.12 45.56 0.42 1.94 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -35.19 299.98 -7.23 -42.42 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -2.78 Total: 3.83 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.01 Total: -11.85 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.68 Total: -34.80 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.41 Total: -16.57 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.19 -7.23 -42.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082878795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.491 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds