Wall clock time and date at job start Mon Mar 30 2020 04:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86799 * 119.99608 * 2 1 4 4 H 1.48492 * 109.47316 * 270.00034 * 3 2 1 5 5 H 1.48503 * 109.47050 * 30.00669 * 3 2 1 6 6 H 1.48505 * 109.46730 * 150.00238 * 3 2 1 7 7 C 1.38798 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99296 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00333 * 359.97438 * 7 2 1 10 10 C 1.80991 * 100.00163 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47439 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99850 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00613 * 179.97438 * 11 10 9 14 14 C 1.39918 * 120.00146 * 185.27544 * 13 11 10 15 15 C 1.38869 * 120.07176 * 33.29544 * 14 13 11 16 16 C 1.38114 * 119.93014 * 180.02562 * 15 14 13 17 17 C 1.38289 * 120.07012 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.92912 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47097 * 90.00265 * 18 17 16 20 20 C 1.38274 * 120.13758 * 0.25935 * 17 16 15 21 21 C 1.38112 * 120.07482 * 359.49064 * 20 17 16 22 22 H 0.97000 * 120.00551 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47295 * 60.00360 * 10 9 7 24 24 H 1.09001 * 109.47536 * 300.00051 * 10 9 7 25 25 H 0.96997 * 119.99223 * 5.27490 * 13 11 10 26 26 H 1.08005 * 120.03707 * 359.97438 * 15 14 13 27 27 H 1.08000 * 119.96855 * 179.97438 * 16 15 14 28 28 H 1.09003 * 109.46633 * 330.00376 * 18 17 16 29 29 H 1.08997 * 109.46849 * 210.00397 * 18 17 16 30 30 H 0.96699 * 113.99949 * 180.02562 * 19 18 17 31 31 H 1.08002 * 119.96502 * 179.74452 * 20 17 16 32 32 H 1.08000 * 120.03994 * 180.25868 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9876 -5.3026 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 -0.0003 14 6 2.3575 -7.6502 -0.1111 15 6 1.2227 -7.9082 -0.8688 16 6 0.7444 -9.1994 -0.9758 17 6 1.3947 -10.2349 -0.3298 18 6 0.8697 -11.6426 -0.4482 19 8 1.4736 -12.2830 -1.5738 20 6 2.5221 -9.9806 0.4293 21 6 3.0084 -8.6923 0.5361 22 1 -0.4851 0.8400 0.0004 23 1 3.1245 -3.7313 0.8895 24 1 3.1246 -3.7313 -0.8905 25 1 3.7983 -6.1856 0.0762 26 1 0.7141 -7.0998 -1.3732 27 1 -0.1383 -9.4007 -1.5645 28 1 -0.2118 -11.6169 -0.5817 29 1 1.1109 -12.1977 0.4583 30 1 1.1811 -13.1944 -1.7115 31 1 3.0253 -10.7908 0.9360 32 1 3.8914 -8.4949 1.1257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082878795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:16 Heat of formation + Delta-G solvation = -87.675346 kcal Electronic energy + Delta-G solvation = -16724.127105 eV Core-core repulsion = 13774.708219 eV Total energy + Delta-G solvation = -2949.418886 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.56627 -39.74468 -37.55990 -35.76669 -34.59878 -32.24927 -31.94031 -30.28572 -27.70873 -26.33657 -24.07108 -22.69332 -21.52060 -19.93006 -18.77737 -18.30781 -18.00705 -16.90932 -16.88598 -16.69188 -16.13998 -15.99848 -15.24116 -14.85643 -14.69932 -14.53027 -14.34692 -14.04013 -13.69957 -13.48247 -13.18497 -12.90109 -12.63776 -12.25082 -12.22035 -11.76054 -11.39425 -11.15388 -11.00402 -10.90978 -10.31438 -9.90662 -9.13243 -8.69148 -8.36233 -6.14821 0.15605 0.43088 1.22142 1.42286 1.44430 1.49385 1.55729 2.12178 2.25472 2.73006 2.98314 3.26449 3.63016 3.74709 3.92475 4.01569 4.20559 4.23918 4.31528 4.43759 4.45006 4.54842 4.66712 4.73927 5.05666 5.24071 5.32944 5.40976 5.48498 5.61866 6.02127 6.18540 6.33559 6.96034 7.05038 7.06076 8.72998 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.065980 B = 0.003178 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.266664 B = 8808.723147 C = 9081.827862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.148 6.148 10 C -0.129 4.129 11 C 0.534 3.466 12 O -0.541 6.541 13 N -0.658 5.658 14 C 0.140 3.860 15 C -0.151 4.151 16 C -0.091 4.091 17 C -0.124 4.124 18 C 0.121 3.879 19 O -0.590 6.590 20 C -0.080 4.080 21 C -0.145 4.145 22 H 0.271 0.729 23 H 0.117 0.883 24 H 0.116 0.884 25 H 0.429 0.571 26 H 0.108 0.892 27 H 0.131 0.869 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.399 0.601 31 H 0.157 0.843 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.622 -22.409 0.695 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.079 5.921 10 C -0.280 4.280 11 C 0.321 3.679 12 O -0.416 6.416 13 N -0.306 5.306 14 C 0.046 3.954 15 C -0.172 4.172 16 C -0.109 4.109 17 C -0.125 4.125 18 C 0.044 3.956 19 O -0.399 6.399 20 C -0.098 4.098 21 C -0.165 4.165 22 H 0.080 0.920 23 H 0.135 0.865 24 H 0.134 0.866 25 H 0.268 0.732 26 H 0.126 0.874 27 H 0.149 0.851 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.250 0.750 31 H 0.174 0.826 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.797 -22.006 0.638 23.040 hybrid contribution 1.392 1.121 -0.070 1.788 sum 8.188 -20.885 0.568 22.440 Atomic orbital electron populations 1.70180 1.07996 1.28667 1.47967 1.26142 0.95972 1.03377 0.93709 0.84936 0.78213 0.75946 0.78782 1.19348 1.20353 1.18096 1.23204 0.95427 0.91839 1.58927 0.89699 1.85606 1.10162 0.99232 1.97087 1.23363 1.03913 0.93261 1.07431 1.20321 0.86237 0.86713 0.74610 1.90717 1.17176 1.85754 1.47989 1.43347 1.11369 1.03173 1.72696 1.18042 0.96189 0.84377 0.96824 1.21167 0.98067 0.97651 1.00300 1.21082 0.99991 0.91471 0.98398 1.19969 0.97362 0.95337 0.99785 1.20979 0.96297 0.88733 0.89547 1.86518 1.70769 1.32913 1.49733 1.21195 0.94577 0.96600 0.97473 1.21185 1.02736 0.91860 1.00757 0.91966 0.86470 0.86629 0.73166 0.87433 0.85068 0.91885 0.90415 0.75039 0.82560 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.30 29.55 68.60 2.03 45.32 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.55 -30.85 9.50 67.95 0.65 -30.21 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 10 C -0.13 -4.97 6.16 71.24 0.44 -4.54 16 11 C 0.53 19.82 7.59 87.66 0.67 20.48 16 12 O -0.54 -25.01 13.55 -3.07 -0.04 -25.05 16 13 N -0.66 -17.81 5.34 -303.50 -1.62 -19.43 16 14 C 0.14 3.88 6.28 38.15 0.24 4.12 16 15 C -0.15 -4.78 8.66 22.39 0.19 -4.58 16 16 C -0.09 -2.38 9.69 22.25 0.22 -2.16 16 17 C -0.12 -2.64 5.51 -19.84 -0.11 -2.75 16 18 C 0.12 1.78 7.17 71.24 0.51 2.29 16 19 O -0.59 -9.30 13.64 -148.98 -2.03 -11.33 16 20 C -0.08 -1.51 9.69 22.25 0.22 -1.30 16 21 C -0.15 -3.00 9.96 22.39 0.22 -2.78 16 22 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 23 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 24 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 25 H 0.43 7.91 8.82 -92.71 -0.82 7.09 16 26 H 0.11 4.02 6.41 -2.91 -0.02 4.00 16 27 H 0.13 3.07 8.06 -2.91 -0.02 3.04 16 28 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 29 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 30 H 0.40 2.11 9.12 -74.06 -0.68 1.43 16 31 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -79.49 299.98 0.83 -78.66 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -0.33 Total: 16.92 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.70 Total: -20.23 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -1.33 Total: -74.99 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -2.07 Total: -36.38 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -79.49 0.83 -78.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082878795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.013 kcal (2) G-P(sol) polarization free energy of solvation -79.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds