Wall clock time and date at job start Mon Mar 30 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39748 * 120.17000 * 56.71011 * 3 2 1 5 5 C 1.38391 * 119.83614 * 180.02562 * 4 3 2 6 6 N 1.40013 * 119.89743 * 180.02562 * 5 4 3 7 7 C 1.39129 * 120.19685 * 359.97438 * 5 4 3 8 8 C 1.37989 * 120.34940 * 359.72558 * 7 5 4 9 9 C 1.38837 * 120.15253 * 0.55513 * 8 7 5 10 10 N 1.39311 * 120.10090 * 179.72163 * 9 8 7 11 11 S 1.65596 * 119.99726 * 327.55503 * 10 9 8 12 12 O 1.42100 * 106.40413 * 314.13237 * 11 10 9 13 13 O 1.42100 * 106.40743 * 181.20884 * 11 10 9 14 14 C 1.76205 * 107.22059 * 67.66660 * 11 10 9 15 15 H 1.07998 * 119.99977 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00307 * 179.97438 * 14 11 10 17 17 N 1.31518 * 120.00294 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99921 * 0.02562 * 16 14 11 19 19 H 1.48506 * 109.46995 * 90.00059 * 18 16 14 20 20 H 1.48506 * 109.47039 * 209.99579 * 18 16 14 21 21 H 1.48496 * 109.47237 * 329.99653 * 18 16 14 22 22 H 1.07994 * 120.07782 * 359.97438 * 4 3 2 23 23 H 0.97006 * 120.00192 * 359.97438 * 6 5 4 24 24 H 0.96993 * 119.99678 * 179.97438 * 6 5 4 25 25 H 1.07995 * 119.81969 * 180.02562 * 7 5 4 26 26 H 1.07995 * 119.92260 * 180.30404 * 8 7 5 27 27 H 0.96996 * 120.00239 * 147.54823 * 10 9 8 28 28 H 0.96997 * 120.00336 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 -0.6622 -1.0099 5 6 4.6545 -0.6576 -1.0029 6 7 5.3598 -1.3208 -2.0144 7 6 5.3470 0.0050 0.0057 8 6 4.6612 0.6672 1.0033 9 6 3.2729 0.6670 1.0136 10 7 2.5816 1.3310 2.0246 11 16 3.2248 1.4182 3.5480 12 8 3.6851 0.1116 3.8647 13 8 2.2811 2.1235 4.3424 14 6 4.6569 2.4404 3.4519 15 1 4.9508 2.8706 2.5059 16 6 5.4017 2.6918 4.5846 17 7 6.4703 3.4552 4.5130 18 14 4.8930 1.9484 6.2210 19 1 5.5452 0.6246 6.3874 20 1 5.3118 2.8487 7.3253 21 1 3.4178 1.7808 6.2514 22 1 2.7350 -1.1774 -1.7934 23 1 4.8784 -1.7829 -2.7185 24 1 6.3297 -1.3182 -2.0111 25 1 6.4270 0.0050 0.0050 26 1 5.2057 1.1834 1.7801 27 1 1.7237 1.7424 1.8361 28 1 6.9945 3.6318 5.3098 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083913778.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:45 Heat of formation + Delta-G solvation = -20.648497 kcal Electronic energy + Delta-G solvation = -17785.202734 eV Core-core repulsion = 14735.150007 eV Total energy + Delta-G solvation = -3050.052727 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.63509 -36.48951 -35.94143 -35.44269 -34.62252 -33.22871 -32.59546 -31.11154 -27.35417 -26.58651 -23.87149 -22.15619 -19.33082 -18.79085 -17.80258 -17.47581 -16.94038 -16.29828 -15.63448 -15.16721 -14.50149 -14.23074 -13.94516 -13.57738 -13.53379 -13.12775 -12.89450 -12.71146 -12.65309 -12.28464 -11.78507 -11.57958 -11.48035 -10.99373 -10.81878 -10.77019 -10.58279 -9.95873 -9.59715 -9.30440 -9.04196 -8.78602 -7.11271 -6.93092 -5.50716 0.99256 1.66185 1.83525 2.80789 3.00926 3.11025 3.18831 3.20299 3.81411 3.86367 4.00653 4.10887 4.21625 4.46102 5.01405 5.08890 5.25142 5.44459 5.54228 5.85758 5.96160 6.16426 6.26066 6.49613 6.65050 6.88847 7.33091 7.41225 7.55891 7.64429 7.79059 8.03149 8.54941 10.17387 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.007674 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.401615 B = 3647.590026 C = 4486.979025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.267 3.733 3 C -0.033 4.033 4 C -0.131 4.131 5 C 0.181 3.819 6 N -0.883 5.883 7 C -0.122 4.122 8 C -0.123 4.123 9 C 0.192 3.808 10 N -1.057 6.057 11 S 2.661 3.339 12 O -0.991 6.991 13 O -0.997 6.997 14 C -1.019 5.019 15 H 0.133 0.867 16 C 0.157 3.843 17 N -0.813 5.813 18 Si 0.799 3.201 19 H -0.243 1.243 20 H -0.253 1.253 21 H -0.221 1.221 22 H 0.129 0.871 23 H 0.395 0.605 24 H 0.398 0.602 25 H 0.133 0.867 26 H 0.175 0.825 27 H 0.415 0.585 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -6.463 -10.961 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.048 4.048 3 C -0.042 4.042 4 C -0.157 4.157 5 C 0.078 3.922 6 N -0.424 5.424 7 C -0.146 4.146 8 C -0.144 4.144 9 C 0.089 3.911 10 N -0.799 5.799 11 S 2.763 3.237 12 O -0.981 6.981 13 O -0.988 6.988 14 C -1.153 5.153 15 H 0.150 0.850 16 C -0.064 4.064 17 N -0.442 5.442 18 Si 0.619 3.381 19 H -0.167 1.167 20 H -0.177 1.177 21 H -0.143 1.143 22 H 0.146 0.854 23 H 0.223 0.777 24 H 0.226 0.774 25 H 0.151 0.849 26 H 0.192 0.808 27 H 0.249 0.751 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.748 -6.810 -9.970 12.097 hybrid contribution 0.604 0.253 0.058 0.657 sum -0.144 -6.557 -9.912 11.886 Atomic orbital electron populations 1.81205 1.11967 1.09020 1.08534 1.25610 0.92595 0.93418 0.93178 1.15549 0.83899 1.04985 0.99748 1.20177 0.92016 1.03856 0.99638 1.17473 0.90581 0.94223 0.89957 1.42355 1.08684 1.62064 1.29324 1.20666 1.00127 0.99554 0.94245 1.21806 0.91772 0.99944 1.00848 1.17131 0.90981 0.93871 0.89111 1.53685 1.32191 1.66095 1.27902 1.02068 0.76151 0.75391 0.70049 1.93462 1.82380 1.41298 1.80981 1.93505 1.65383 1.74750 1.65115 1.30409 1.29909 1.49570 1.05378 0.84970 1.24368 0.92618 0.90935 0.98468 1.69963 1.13165 1.29612 1.31409 0.87891 0.84185 0.81822 0.84249 1.16673 1.17705 1.14345 0.85358 0.77701 0.77371 0.84871 0.80791 0.75137 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.47 18.54 41.84 0.78 -6.70 15 2 C 0.27 4.29 14.35 -22.47 -0.32 3.97 15 3 C -0.03 -0.51 5.75 -106.63 -0.61 -1.12 15 4 C -0.13 -1.60 9.60 -38.96 -0.37 -1.98 15 5 C 0.18 2.11 6.75 -83.73 -0.56 1.54 15 6 N -0.88 -6.89 9.10 32.42 0.30 -6.59 15 7 C -0.12 -1.66 9.87 -39.34 -0.39 -2.04 15 8 C -0.12 -2.11 8.89 -39.45 -0.35 -2.46 15 9 C 0.19 3.40 6.21 -83.47 -0.52 2.88 15 10 N -1.06 -20.61 5.51 32.60 0.18 -20.43 15 11 S 2.66 64.21 3.84 -107.50 -0.41 63.79 15 12 O -0.99 -25.35 16.23 -57.17 -0.93 -26.28 15 13 O -1.00 -26.23 16.02 -57.17 -0.92 -27.14 15 14 C -1.02 -26.03 8.10 30.60 0.25 -25.79 15 15 H 0.13 3.30 7.16 -52.49 -0.38 2.93 15 16 C 0.16 4.19 5.47 -17.82 -0.10 4.10 15 17 N -0.81 -21.75 13.96 55.43 0.77 -20.97 15 18 Si 0.80 19.52 26.54 -169.99 -4.51 15.01 15 19 H -0.24 -5.78 7.11 56.52 0.40 -5.37 15 20 H -0.25 -5.70 7.11 56.52 0.40 -5.30 15 21 H -0.22 -5.60 5.61 56.52 0.32 -5.28 15 22 H 0.13 1.23 8.06 -52.49 -0.42 0.81 15 23 H 0.40 2.29 8.84 -40.82 -0.36 1.93 15 24 H 0.40 2.46 8.84 -40.82 -0.36 2.10 15 25 H 0.13 1.49 8.06 -52.49 -0.42 1.06 15 26 H 0.18 3.39 4.47 -52.49 -0.23 3.16 15 27 H 0.41 7.24 8.21 -34.47 -0.28 6.96 15 28 H 0.28 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 266.49 15.07 4.02 4.02 Total: -1.00 -31.27 266.49 -5.39 -36.66 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -1.68 Total: 9.55 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.98 Total: -20.91 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 2.02 Total: -54.69 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -1.84 Total: -53.42 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.51 Total: 15.01 kcal Atomic # 16 Polarization: 64.21 SS G_CDS: -0.41 Total: 63.79 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.27 -5.39 -36.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083913778.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.007 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds