Wall clock time and date at job start Mon Mar 30 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39748 * 120.17000 * 56.71011 * 3 2 1 5 5 C 1.38391 * 119.83614 * 180.02562 * 4 3 2 6 6 N 1.40013 * 119.89743 * 180.02562 * 5 4 3 7 7 C 1.39129 * 120.19685 * 359.97438 * 5 4 3 8 8 C 1.37989 * 120.34940 * 359.72558 * 7 5 4 9 9 C 1.38837 * 120.15253 * 0.55513 * 8 7 5 10 10 N 1.39311 * 120.10090 * 179.72163 * 9 8 7 11 11 S 1.65596 * 119.99726 * 327.55503 * 10 9 8 12 12 O 1.42100 * 106.40413 * 314.13237 * 11 10 9 13 13 O 1.42100 * 106.40743 * 181.20884 * 11 10 9 14 14 C 1.76205 * 107.22059 * 67.66660 * 11 10 9 15 15 H 1.07998 * 119.99977 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00307 * 179.97438 * 14 11 10 17 17 N 1.31518 * 120.00294 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99921 * 0.02562 * 16 14 11 19 19 H 1.48506 * 109.46995 * 90.00059 * 18 16 14 20 20 H 1.48506 * 109.47039 * 209.99579 * 18 16 14 21 21 H 1.48496 * 109.47237 * 329.99653 * 18 16 14 22 22 H 1.07994 * 120.07782 * 359.97438 * 4 3 2 23 23 H 0.97006 * 120.00192 * 359.97438 * 6 5 4 24 24 H 0.96993 * 119.99678 * 179.97438 * 6 5 4 25 25 H 1.07995 * 119.81969 * 180.02562 * 7 5 4 26 26 H 1.07995 * 119.92260 * 180.30404 * 8 7 5 27 27 H 0.96996 * 120.00239 * 147.54823 * 10 9 8 28 28 H 0.96997 * 120.00336 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 -0.6622 -1.0099 5 6 4.6545 -0.6576 -1.0029 6 7 5.3598 -1.3208 -2.0144 7 6 5.3470 0.0050 0.0057 8 6 4.6612 0.6672 1.0033 9 6 3.2729 0.6670 1.0136 10 7 2.5816 1.3310 2.0246 11 16 3.2248 1.4182 3.5480 12 8 3.6851 0.1116 3.8647 13 8 2.2811 2.1235 4.3424 14 6 4.6569 2.4404 3.4519 15 1 4.9508 2.8706 2.5059 16 6 5.4017 2.6918 4.5846 17 7 6.4703 3.4552 4.5130 18 14 4.8930 1.9484 6.2210 19 1 5.5452 0.6246 6.3874 20 1 5.3118 2.8487 7.3253 21 1 3.4178 1.7808 6.2514 22 1 2.7350 -1.1774 -1.7934 23 1 4.8784 -1.7829 -2.7185 24 1 6.3297 -1.3182 -2.0111 25 1 6.4270 0.0050 0.0050 26 1 5.2057 1.1834 1.7801 27 1 1.7237 1.7424 1.8361 28 1 6.9945 3.6318 5.3098 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083913778.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:45 Heat of formation + Delta-G solvation = -46.314082 kcal Electronic energy + Delta-G solvation = -17786.315677 eV Core-core repulsion = 14735.150007 eV Total energy + Delta-G solvation = -3051.165670 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80171 -37.83316 -37.70180 -36.79271 -36.60909 -35.22592 -33.73301 -32.27817 -28.76978 -28.27621 -25.04149 -23.40582 -21.03759 -20.12781 -19.57620 -18.78219 -18.62417 -17.50966 -17.08557 -16.50834 -16.21172 -15.58114 -15.38042 -15.23802 -15.06605 -14.72558 -14.18684 -14.08238 -13.84950 -13.75105 -13.43326 -13.17145 -12.93695 -12.85609 -12.79487 -12.59712 -12.10767 -11.75151 -11.29367 -11.18861 -10.59154 -9.94053 -8.95007 -8.14115 -7.51864 -0.19214 -0.05316 0.57730 1.07861 1.16596 1.23905 1.54156 1.90920 1.97808 2.31895 2.43620 2.77396 2.93275 3.22293 3.24356 3.90267 3.98604 4.09829 4.29630 4.50261 4.70788 5.07324 5.15329 5.33855 5.35193 5.42957 5.71710 6.03456 6.06932 6.39005 6.52897 6.68971 7.19865 8.20436 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.007674 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.401615 B = 3647.590026 C = 4486.979025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.279 3.721 3 C -0.030 4.030 4 C -0.119 4.119 5 C 0.201 3.799 6 N -0.862 5.862 7 C -0.123 4.123 8 C -0.145 4.145 9 C 0.152 3.848 10 N -1.050 6.050 11 S 2.680 3.320 12 O -1.010 7.010 13 O -1.025 7.025 14 C -1.025 5.025 15 H 0.128 0.872 16 C 0.121 3.879 17 N -0.838 5.838 18 Si 0.813 3.187 19 H -0.235 1.235 20 H -0.221 1.221 21 H -0.238 1.238 22 H 0.164 0.836 23 H 0.411 0.589 24 H 0.410 0.590 25 H 0.156 0.844 26 H 0.146 0.854 27 H 0.422 0.578 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -7.927 -12.882 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.035 4.035 3 C -0.039 4.039 4 C -0.145 4.145 5 C 0.095 3.905 6 N -0.404 5.404 7 C -0.146 4.146 8 C -0.167 4.167 9 C 0.051 3.949 10 N -0.797 5.797 11 S 2.782 3.218 12 O -1.000 7.000 13 O -1.015 7.015 14 C -1.159 5.159 15 H 0.146 0.854 16 C -0.098 4.098 17 N -0.468 5.468 18 Si 0.631 3.369 19 H -0.158 1.158 20 H -0.143 1.143 21 H -0.161 1.161 22 H 0.181 0.819 23 H 0.241 0.759 24 H 0.240 0.760 25 H 0.173 0.827 26 H 0.163 0.837 27 H 0.257 0.743 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.135 -8.290 -11.923 14.522 hybrid contribution 0.491 0.623 0.423 0.899 sum 0.356 -7.666 -11.500 13.825 Atomic orbital electron populations 1.81218 1.12679 1.09934 1.09393 1.25717 0.92655 0.92667 0.92424 1.15591 0.83366 1.05067 0.99825 1.20535 0.92364 1.02430 0.99141 1.17462 0.90518 0.92799 0.89736 1.42348 1.09475 1.60391 1.28160 1.20863 1.01280 0.98866 0.93631 1.21631 0.91739 1.01587 1.01733 1.17300 0.91303 0.96308 0.90015 1.53086 1.32505 1.67005 1.27128 1.01239 0.75300 0.74519 0.70710 1.93422 1.82718 1.41735 1.82096 1.93460 1.65725 1.75269 1.67046 1.30700 1.30571 1.49453 1.05188 0.85445 1.24926 0.92954 0.91433 1.00443 1.69969 1.13781 1.30402 1.32611 0.87658 0.83096 0.82670 0.83482 1.15789 1.14303 1.16050 0.81851 0.75906 0.75951 0.82672 0.83697 0.74282 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.34 18.54 19.00 0.35 -14.99 15 2 C 0.28 8.61 14.35 88.33 1.27 9.88 15 3 C -0.03 -0.86 5.75 -21.17 -0.12 -0.98 15 4 C -0.12 -2.47 9.60 22.67 0.22 -2.26 15 5 C 0.20 3.92 6.75 38.08 0.26 4.18 15 6 N -0.86 -9.26 9.10 -51.34 -0.47 -9.73 15 7 C -0.12 -3.06 9.87 22.42 0.22 -2.84 15 8 C -0.15 -5.00 8.89 22.35 0.20 -4.80 15 9 C 0.15 5.35 6.21 38.60 0.24 5.59 15 10 N -1.05 -41.68 5.51 -50.78 -0.28 -41.96 15 11 S 2.68 132.04 3.84 -56.49 -0.22 131.82 15 12 O -1.01 -52.46 16.23 -128.00 -2.08 -54.53 15 13 O -1.02 -55.02 16.02 -128.00 -2.05 -57.07 15 14 C -1.03 -53.76 8.10 67.73 0.55 -53.21 15 15 H 0.13 6.62 7.16 -2.91 -0.02 6.60 15 16 C 0.12 6.54 5.47 84.65 0.46 7.01 15 17 N -0.84 -45.16 13.96 21.45 0.30 -44.86 15 18 Si 0.81 39.29 26.54 68.60 1.82 41.11 15 19 H -0.23 -10.93 7.11 99.48 0.71 -10.22 15 20 H -0.22 -9.45 7.11 99.48 0.71 -8.74 15 21 H -0.24 -12.11 5.61 99.48 0.56 -11.55 15 22 H 0.16 2.28 8.06 -2.91 -0.02 2.26 15 23 H 0.41 2.54 8.84 -92.70 -0.82 1.72 15 24 H 0.41 3.10 8.84 -92.71 -0.82 2.28 15 25 H 0.16 3.07 8.06 -2.91 -0.02 3.04 15 26 H 0.15 5.85 4.47 -2.91 -0.01 5.84 15 27 H 0.42 15.03 8.21 -96.75 -0.79 14.23 15 28 H 0.29 14.26 8.31 -92.71 -0.77 13.49 15 Total: -1.00 -68.03 266.49 -0.64 -68.67 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -1.31 Total: 18.97 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.29 Total: -37.44 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -0.10 Total: -111.53 kcal Atomic # 8 Polarization: -107.47 SS G_CDS: -4.13 Total: -111.60 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.82 Total: 41.11 kcal Atomic # 16 Polarization: 132.04 SS G_CDS: -0.22 Total: 131.82 kcal Total: -68.03 -0.64 -68.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083913778.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.358 kcal (2) G-P(sol) polarization free energy of solvation -68.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds