Wall clock time and date at job start Mon Mar 30 2020 04:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47060 * 299.99540 * 3 2 1 6 6 H 1.48492 * 109.47281 * 59.99837 * 3 2 1 7 7 C 1.37876 * 119.99329 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99297 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00391 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40415 * 66.46218 * 9 7 2 11 11 O 1.42097 * 106.40332 * 293.54051 * 9 7 2 12 12 N 1.65601 * 107.21834 * 179.97438 * 9 7 2 13 13 C 1.39760 * 119.99775 * 65.00005 * 12 9 7 14 14 N 1.30646 * 126.17734 * 0.02562 * 13 12 9 15 15 N 1.39854 * 110.03647 * 179.97438 * 14 13 12 16 16 H 0.97005 * 125.39947 * 179.97438 * 15 14 13 17 17 C 1.37049 * 109.20470 * 0.02562 * 15 14 13 18 18 C 1.39316 * 133.78213 * 180.02562 * 17 15 14 19 19 C 1.36589 * 119.84751 * 179.97438 * 18 17 15 20 20 C 1.38954 * 120.80421 * 0.02562 * 19 18 17 21 21 C 1.36517 * 120.61092 * 0.02562 * 20 19 18 22 22 C 1.39803 * 119.64921 * 0.24314 * 21 20 19 23 23 H 0.97001 * 119.99483 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00615 * 245.00006 * 12 9 7 25 25 H 1.07994 * 120.07238 * 359.97438 * 18 17 15 26 26 H 1.08004 * 119.60272 * 179.97438 * 19 18 17 27 27 H 1.08002 * 119.69740 * 179.97438 * 20 19 18 28 28 H 1.08002 * 120.17292 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2494 11 8 0.4507 -2.7950 1.2500 12 7 2.2481 -3.9354 0.0005 13 6 3.0981 -4.1009 1.0975 14 7 3.1101 -3.3708 2.1809 15 7 4.0953 -3.8330 3.0593 16 1 4.2959 -3.4529 3.9289 17 6 4.7331 -4.9075 2.4964 18 6 5.7686 -5.7409 2.9135 19 6 6.1933 -6.7552 2.1033 20 6 5.6050 -6.9687 0.8627 21 6 4.5891 -6.1671 0.4278 22 6 4.1407 -5.1187 1.2367 23 1 -0.4849 0.8401 0.0004 24 1 2.3170 -4.5326 -0.7607 25 1 6.2345 -5.5852 3.8753 26 1 6.9967 -7.3986 2.4304 27 1 5.9551 -7.7759 0.2363 28 1 4.1372 -6.3392 -0.5379 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083920594.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:56 Heat of formation + Delta-G solvation = -32.705553 kcal Electronic energy + Delta-G solvation = -17788.039432 eV Core-core repulsion = 14737.463872 eV Total energy + Delta-G solvation = -3050.575560 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.22100 -38.19594 -37.51091 -36.32753 -36.24338 -35.20080 -32.27775 -30.79409 -29.88228 -28.31079 -24.05263 -23.26619 -22.52046 -21.08194 -19.57427 -19.09018 -18.43642 -17.55798 -17.23992 -16.85392 -16.25458 -16.02664 -15.80502 -15.65351 -14.89833 -14.68799 -14.07678 -13.50696 -13.26927 -13.06514 -13.00706 -12.74837 -12.64176 -12.53427 -12.49146 -12.33347 -11.93018 -11.58905 -11.28449 -11.02983 -10.45372 -9.65032 -8.83664 -8.68465 -7.50982 0.00712 0.07320 0.63065 1.29499 1.30655 1.48431 1.53317 1.67059 2.17815 2.54072 2.68256 2.91022 3.43099 3.57423 3.72787 3.86688 4.21204 4.36732 4.53296 4.54983 4.65063 5.02827 5.15015 5.22322 5.32946 5.57354 5.65526 5.84011 5.90795 6.04491 6.50164 6.71382 6.73889 8.18064 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.006377 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.876091 B = 4390.007754 C = 4833.216504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.994 3.006 4 H -0.255 1.255 5 H -0.252 1.252 6 H -0.258 1.258 7 C -1.019 5.019 8 H 0.110 0.890 9 S 2.711 3.289 10 O -1.023 7.023 11 O -1.017 7.017 12 N -1.013 6.013 13 C 0.329 3.671 14 N -0.314 5.314 15 N -0.498 5.498 16 H 0.453 0.547 17 C 0.130 3.870 18 C -0.149 4.149 19 C -0.057 4.057 20 C -0.158 4.158 21 C -0.052 4.052 22 C -0.210 4.210 23 H 0.301 0.699 24 H 0.438 0.562 25 H 0.156 0.844 26 H 0.170 0.830 27 H 0.160 0.840 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.608 -11.694 3.582 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.812 3.188 4 H -0.178 1.178 5 H -0.176 1.176 6 H -0.183 1.183 7 C -1.154 5.154 8 H 0.128 0.872 9 S 2.812 3.188 10 O -1.014 7.014 11 O -1.006 7.006 12 N -0.765 5.765 13 C 0.060 3.940 14 N -0.137 5.137 15 N -0.216 5.216 16 H 0.300 0.700 17 C 0.013 3.987 18 C -0.171 4.171 19 C -0.077 4.077 20 C -0.178 4.178 21 C -0.072 4.072 22 C -0.221 4.221 23 H 0.111 0.889 24 H 0.276 0.724 25 H 0.174 0.826 26 H 0.187 0.813 27 H 0.177 0.823 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.847 -10.671 4.268 17.995 hybrid contribution 0.565 0.644 -0.334 0.920 sum 14.412 -10.026 3.934 17.992 Atomic orbital electron populations 1.69973 1.08566 1.32412 1.41360 1.25967 0.95443 1.05116 0.87451 0.85058 0.79095 0.75032 0.79638 1.17786 1.17631 1.18273 1.30554 1.06448 1.11674 1.66679 0.87173 1.00457 0.72381 0.73974 0.71956 1.93357 1.73626 1.87972 1.46402 1.93348 1.73445 1.87426 1.46400 1.52999 1.50459 1.49619 1.23421 1.20039 0.91620 0.94294 0.88077 1.76995 1.11784 1.22821 1.02099 1.45533 1.29902 1.27484 1.18665 0.69984 1.19308 0.96064 0.90729 0.92614 1.20254 0.96918 0.96691 1.03191 1.21245 0.98372 0.95283 0.92791 1.21067 0.97326 1.01393 0.97993 1.20657 0.96165 0.91517 0.98836 1.19795 1.01132 1.02197 0.98936 0.88904 0.72394 0.82615 0.81302 0.82279 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.15 13.19 21.45 0.28 -53.86 15 2 C 0.07 4.20 5.46 84.65 0.46 4.67 15 3 Si 0.99 43.01 29.54 68.60 2.03 45.04 15 4 H -0.25 -10.54 7.11 99.48 0.71 -9.83 15 5 H -0.25 -10.08 7.11 99.48 0.71 -9.37 15 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 7 C -1.02 -58.98 9.68 67.73 0.66 -58.32 15 8 H 0.11 6.01 7.81 -2.91 -0.02 5.99 15 9 S 2.71 152.99 4.78 -56.49 -0.27 152.72 15 10 O -1.02 -61.63 18.02 -128.00 -2.31 -63.94 15 11 O -1.02 -64.10 17.24 -128.00 -2.21 -66.31 15 12 N -1.01 -44.05 5.90 -51.00 -0.30 -44.35 15 13 C 0.33 13.92 7.95 135.22 1.08 15.00 15 14 N -0.31 -14.15 11.62 -50.85 -0.59 -14.75 15 15 N -0.50 -16.52 7.36 -51.53 -0.38 -16.90 15 16 H 0.45 11.55 8.96 -213.47 -1.91 9.63 15 17 C 0.13 3.77 7.33 39.21 0.29 4.05 15 18 C -0.15 -2.82 10.03 22.14 0.22 -2.60 15 19 C -0.06 -0.83 9.96 22.06 0.22 -0.61 15 20 C -0.16 -2.65 9.97 22.04 0.22 -2.43 15 21 C -0.05 -1.23 10.06 22.25 0.22 -1.01 15 22 C -0.21 -6.85 6.38 -20.16 -0.13 -6.98 15 23 H 0.30 16.26 8.31 -92.71 -0.77 15.49 15 24 H 0.44 15.15 8.95 -96.74 -0.87 14.29 15 25 H 0.16 1.95 8.06 -2.91 -0.02 1.92 15 26 H 0.17 1.11 8.06 -2.91 -0.02 1.08 15 27 H 0.16 1.57 8.06 -2.91 -0.02 1.55 15 28 H 0.14 2.77 8.06 -2.91 -0.02 2.75 15 Total: -1.00 -84.92 272.06 -2.05 -86.97 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -1.55 Total: 23.62 kcal Atomic # 6 Polarization: -51.48 SS G_CDS: 3.24 Total: -48.24 kcal Atomic # 7 Polarization: -128.88 SS G_CDS: -0.99 Total: -129.87 kcal Atomic # 8 Polarization: -125.73 SS G_CDS: -4.51 Total: -130.25 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 152.99 SS G_CDS: -0.27 Total: 152.72 kcal Total: -84.92 -2.05 -86.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083920594.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.269 kcal (2) G-P(sol) polarization free energy of solvation -84.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds