Wall clock time and date at job start Mon Mar 30 2020 04:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.40216 * 120.50335 * 2 1 4 4 C 1.38513 * 120.72485 * 15.41512 * 3 2 1 5 5 C 1.38384 * 119.80254 * 180.02562 * 4 3 2 6 6 Cl 1.73606 * 119.90936 * 180.02562 * 5 4 3 7 7 C 1.38384 * 120.17314 * 0.03218 * 5 4 3 8 8 C 1.38312 * 120.24517 * 359.97241 * 7 5 4 9 9 C 1.38385 * 119.88864 * 0.02562 * 8 7 5 10 10 O 1.36016 * 120.64511 * 180.02562 * 9 8 7 11 11 C 1.42991 * 116.71381 * 147.18906 * 10 9 8 12 12 H 1.09000 * 109.44259 * 166.39932 * 11 10 9 13 13 C 1.50701 * 109.45030 * 286.33039 * 11 10 9 14 14 H 1.08002 * 119.99761 * 119.99567 * 13 11 10 15 15 C 1.37871 * 119.99694 * 300.28130 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 C 1.35084 * 120.50959 * 180.02562 * 2 1 3 22 22 O 1.21296 * 120.13021 * 1.69171 * 21 2 1 23 23 H 1.09005 * 109.47162 * 89.99710 * 1 2 3 24 24 H 1.09001 * 109.47048 * 209.99549 * 1 2 3 25 25 H 1.09001 * 109.47762 * 330.00047 * 1 2 3 26 26 H 1.07999 * 120.09650 * 0.04975 * 4 3 2 27 27 H 1.08000 * 119.87656 * 179.97438 * 7 5 4 28 28 H 1.07998 * 120.04977 * 180.02562 * 8 7 5 29 29 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1767 1.2081 0.0000 4 6 1.5469 2.4005 0.3165 5 6 2.2676 3.5818 0.3101 6 17 1.4812 5.0778 0.7070 7 6 3.6134 3.5738 -0.0120 8 6 4.2468 2.3858 -0.3289 9 6 3.5322 1.2007 -0.3244 10 8 4.1398 0.0236 -0.6330 11 6 3.6571 -1.1439 0.0367 12 1 4.0441 -2.0334 -0.4603 13 6 4.1217 -1.1282 1.4702 14 1 3.3984 -1.1293 2.2723 15 6 5.4699 -1.1066 1.7577 16 7 6.3506 -1.1053 0.7810 17 14 6.0457 -1.0793 3.5345 18 1 5.5491 -2.2912 4.2345 19 1 7.5301 -1.0591 3.5736 20 1 5.5159 0.1335 4.2080 21 6 2.1507 -1.1638 -0.0005 22 8 1.5564 -2.2207 -0.0320 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3635 0.8900 0.5138 26 1 0.4966 2.4081 0.5679 27 1 4.1712 4.4986 -0.0160 28 1 5.2973 2.3831 -0.5794 29 1 7.2991 -1.0897 0.9832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084788024.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:22 Heat of formation + Delta-G solvation = -62.702251 kcal Electronic energy + Delta-G solvation = -18283.953189 eV Core-core repulsion = 15197.740417 eV Total energy + Delta-G solvation = -3086.212772 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.31234 -39.83709 -38.49921 -37.36242 -36.41598 -34.86009 -31.51293 -30.92284 -30.26337 -28.00341 -25.40893 -24.40926 -23.26913 -20.53402 -19.91722 -19.05255 -18.25865 -17.09961 -16.79907 -16.67790 -16.25947 -15.98934 -15.57923 -15.23487 -15.04166 -14.55828 -14.15433 -13.83684 -13.60318 -13.40067 -13.08627 -12.99348 -12.84742 -12.47244 -12.40549 -12.14239 -11.81654 -11.39266 -11.18785 -10.86120 -10.61832 -9.54117 -8.69552 -8.31974 -6.64730 0.11042 0.23038 1.12212 1.31743 1.39692 1.42848 1.50626 1.75344 2.31071 2.52124 2.84894 3.18064 3.30710 3.73245 4.03363 4.18766 4.26044 4.33503 4.45932 4.63502 4.72717 4.81356 4.86913 5.14629 5.22226 5.41280 5.49341 5.55500 5.65651 5.95222 6.38418 6.74684 6.82399 7.14948 8.70127 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.008257 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.684815 B = 3390.211670 C = 4253.887106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.556 5.556 3 C 0.084 3.916 4 C -0.113 4.113 5 C -0.046 4.046 6 Cl -0.056 7.056 7 C -0.090 4.090 8 C -0.119 4.119 9 C 0.101 3.899 10 O -0.316 6.316 11 C 0.205 3.795 12 H 0.086 0.914 13 C -0.580 4.580 14 H 0.054 0.946 15 C 0.049 3.951 16 N -0.875 5.875 17 Si 0.964 3.036 18 H -0.270 1.270 19 H -0.269 1.269 20 H -0.267 1.267 21 C 0.500 3.500 22 O -0.560 6.560 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.161 0.839 27 H 0.166 0.834 28 H 0.142 0.858 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 11.959 -0.417 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.281 5.281 3 C -0.010 4.010 4 C -0.134 4.134 5 C -0.074 4.074 6 Cl -0.027 7.027 7 C -0.109 4.109 8 C -0.139 4.139 9 C 0.052 3.948 10 O -0.231 6.231 11 C 0.148 3.852 12 H 0.103 0.897 13 C -0.617 4.617 14 H 0.072 0.928 15 C -0.158 4.158 16 N -0.509 5.509 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.193 1.193 20 H -0.192 1.192 21 C 0.291 3.709 22 O -0.439 6.439 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.126 0.874 26 H 0.179 0.821 27 H 0.184 0.816 28 H 0.160 0.840 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.252 11.389 -0.615 13.516 hybrid contribution 0.210 -0.506 0.837 1.000 sum -7.042 10.883 0.222 12.965 Atomic orbital electron populations 1.22059 0.76173 1.04764 1.03809 1.45621 1.08404 1.04014 1.70030 1.18108 0.91044 0.86661 1.05227 1.20532 1.01582 0.88494 1.02794 1.20433 0.93363 0.87154 1.06427 1.98343 1.80403 1.31350 1.92587 1.21035 0.92597 0.98396 0.98855 1.20626 1.00460 0.89686 1.03078 1.19234 0.89476 0.88601 0.97441 1.86396 1.60201 1.13712 1.62742 1.20269 0.84067 0.85394 0.95470 0.89672 1.21186 0.93175 1.57319 0.90018 0.92814 1.25731 0.95988 0.91879 1.02169 1.70087 1.02448 1.44655 1.33693 0.85528 0.77797 0.79215 0.78739 1.19458 1.19330 1.19203 1.22247 0.92338 0.83037 0.73284 1.90568 1.71728 1.30994 1.50566 0.90464 0.90774 0.87429 0.82139 0.81650 0.84000 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.07 10.23 127.77 1.31 3.38 15 2 N -0.56 -22.05 3.12 -653.69 -2.04 -24.08 15 3 C 0.08 3.19 6.39 38.14 0.24 3.43 15 4 C -0.11 -3.33 9.14 22.37 0.20 -3.12 15 5 C -0.05 -1.26 6.32 22.34 0.14 -1.12 15 6 Cl -0.06 -1.22 28.95 -2.72 -0.08 -1.30 15 7 C -0.09 -2.49 9.82 22.32 0.22 -2.27 15 8 C -0.12 -4.21 10.00 22.32 0.22 -3.99 15 9 C 0.10 4.28 6.07 22.58 0.14 4.42 15 10 O -0.32 -16.04 9.57 -93.73 -0.90 -16.94 15 11 C 0.20 10.86 3.05 29.10 0.09 10.94 15 12 H 0.09 4.86 8.14 -2.39 -0.02 4.84 15 13 C -0.58 -31.93 8.38 25.60 0.21 -31.72 15 14 H 0.05 3.00 7.74 -2.91 -0.02 2.98 15 15 C 0.05 2.62 5.40 84.65 0.46 3.08 15 16 N -0.87 -48.02 12.83 21.45 0.28 -47.74 15 17 Si 0.96 41.57 29.54 68.60 2.03 43.60 15 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 15 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 21 C 0.50 24.24 6.85 87.61 0.60 24.84 15 22 O -0.56 -28.87 16.77 -3.08 -0.05 -28.93 15 23 H 0.08 1.95 8.14 -2.38 -0.02 1.93 15 24 H 0.07 2.25 7.49 -2.39 -0.02 2.23 15 25 H 0.11 2.30 5.96 -2.39 -0.01 2.28 15 26 H 0.16 3.73 6.12 -2.91 -0.02 3.71 15 27 H 0.17 3.46 8.06 -2.91 -0.02 3.44 15 28 H 0.14 4.89 8.06 -2.91 -0.02 4.86 15 29 H 0.28 14.06 8.31 -92.71 -0.77 13.29 15 Total: -1.00 -63.83 271.74 4.26 -59.57 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.19 Total: 7.95 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 3.84 Total: 7.88 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -1.76 Total: -71.83 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -0.95 Total: -45.86 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -63.83 4.26 -59.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084788024.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.132 kcal (2) G-P(sol) polarization free energy of solvation -63.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds