Wall clock time and date at job start Mon Mar 30 2020 04:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.44618 * 2 1 4 4 O 1.43006 * 109.44608 * 119.90577 * 2 1 3 5 5 C 1.35938 * 116.69797 * 166.39813 * 4 2 1 6 6 C 1.38393 * 120.67623 * 147.17948 * 5 4 2 7 7 C 1.38405 * 119.87019 * 180.12588 * 6 5 4 8 8 Cl 1.73605 * 119.87318 * 179.97438 * 7 6 5 9 9 C 1.38455 * 120.25879 * 0.25112 * 7 6 5 10 10 C 1.38204 * 120.20217 * 359.45925 * 9 7 6 11 11 C 1.38649 * 119.81865 * 0.53078 * 10 9 7 12 12 N 1.39966 * 120.72532 * 179.78514 * 11 10 9 13 13 C 1.37082 * 120.49807 * 15.45941 * 12 11 10 14 14 H 1.08008 * 120.00526 * 221.92100 * 13 12 11 15 15 C 1.38878 * 120.00212 * 41.92226 * 13 12 11 16 16 N 1.31436 * 119.99454 * 15.54407 * 15 13 12 17 17 Si 1.86801 * 120.00301 * 195.54177 * 15 13 12 18 18 H 1.48504 * 109.46846 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46820 * 119.99943 * 17 15 13 20 20 H 1.48495 * 109.47119 * 240.00068 * 17 15 13 21 21 C 1.35089 * 119.00405 * 195.48141 * 12 11 10 22 22 O 1.21277 * 120.12692 * 181.65356 * 21 12 11 23 23 H 1.09007 * 109.46958 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47133 * 299.93147 * 1 2 3 25 25 H 1.08995 * 109.47215 * 59.93943 * 1 2 3 26 26 H 1.08010 * 120.06570 * 0.15497 * 6 5 4 27 27 H 1.08001 * 119.89987 * 179.72289 * 9 7 6 28 28 H 1.07999 * 120.09373 * 180.25803 * 10 9 7 29 29 H 0.96998 * 119.99696 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 8 2.0060 -0.6723 1.1689 5 6 3.3224 -1.0111 1.1851 6 6 4.0349 -1.0193 2.3715 7 6 5.3752 -1.3645 2.3684 8 17 6.2691 -1.3742 3.8566 9 6 6.0073 -1.6965 1.1821 10 6 5.3010 -1.6963 -0.0058 11 6 3.9580 -1.3516 -0.0093 12 7 3.2257 -1.3408 -1.2021 13 6 3.7128 -1.9611 -2.3232 14 1 3.6208 -1.4838 -3.2877 15 6 4.3248 -3.2034 -2.2190 16 7 4.1736 -3.9209 -1.1282 17 14 5.3625 -3.8547 -3.6291 18 1 5.3748 -2.8626 -4.7340 19 1 6.7512 -4.0854 -3.1562 20 1 4.7871 -5.1335 -4.1177 21 6 2.0318 -0.7094 -1.2319 22 8 1.3665 -0.7129 -2.2459 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5128 0.8906 25 1 -0.3633 0.5147 -0.8894 26 1 3.5457 -0.7574 3.2983 27 1 7.0546 -1.9605 1.1857 28 1 5.7949 -1.9596 -0.9295 29 1 4.6007 -4.7888 -1.0555 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084883291.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:52 Heat of formation + Delta-G solvation = -60.623746 kcal Electronic energy + Delta-G solvation = -18398.701403 eV Core-core repulsion = 15312.578761 eV Total energy + Delta-G solvation = -3086.122642 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.36698 -39.64693 -38.72328 -37.57446 -36.42177 -34.00605 -32.99574 -31.02967 -29.96178 -27.87658 -24.89500 -24.15178 -23.50069 -20.66355 -20.11593 -19.43972 -18.11267 -17.58543 -17.02886 -16.50044 -15.94863 -15.70424 -15.51666 -15.24295 -14.87296 -14.39052 -14.05830 -13.73677 -13.55324 -13.37088 -13.01192 -12.94877 -12.83644 -12.51073 -12.30692 -12.12196 -11.96042 -11.77476 -11.28979 -10.79958 -10.47721 -9.52181 -8.81855 -8.33209 -6.38849 0.12129 0.39639 1.16159 1.30450 1.37664 1.51549 1.63074 2.00748 2.31255 2.67150 2.68626 3.01986 3.33526 3.84808 3.91367 3.96133 4.16278 4.30885 4.52906 4.73991 4.79022 4.88874 5.08418 5.13742 5.24116 5.33118 5.39518 5.62327 5.91123 6.08028 6.34578 6.82413 7.05506 7.54323 8.52370 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.010122 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.875387 B = 2765.630807 C = 4429.832735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.080 3.920 3 H 0.112 0.888 4 O -0.309 6.309 5 C 0.051 3.949 6 C -0.105 4.105 7 C -0.047 4.047 8 Cl -0.059 7.059 9 C -0.105 4.105 10 C -0.086 4.086 11 C 0.121 3.879 12 N -0.398 5.398 13 C -0.373 4.373 14 H 0.080 0.920 15 C 0.018 3.982 16 N -0.868 5.868 17 Si 0.985 3.015 18 H -0.265 1.265 19 H -0.255 1.255 20 H -0.277 1.277 21 C 0.426 3.574 22 O -0.571 6.571 23 H 0.050 0.950 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.160 0.840 27 H 0.151 0.849 28 H 0.123 0.877 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 5.278 7.914 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.021 3.979 3 H 0.130 0.870 4 O -0.224 6.224 5 C 0.005 3.995 6 C -0.125 4.125 7 C -0.075 4.075 8 Cl -0.030 7.030 9 C -0.125 4.125 10 C -0.107 4.107 11 C 0.024 3.976 12 N -0.107 5.107 13 C -0.499 4.499 14 H 0.098 0.902 15 C -0.189 4.189 16 N -0.501 5.501 17 Si 0.807 3.193 18 H -0.189 1.189 19 H -0.179 1.179 20 H -0.203 1.203 21 C 0.217 3.783 22 O -0.453 6.453 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.110 0.890 26 H 0.177 0.823 27 H 0.169 0.831 28 H 0.141 0.859 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.789 5.047 7.667 9.593 hybrid contribution 0.425 -0.726 -1.039 1.337 sum 3.214 4.321 6.628 8.540 Atomic orbital electron populations 1.21640 0.87688 1.03434 1.04962 1.22766 0.99000 0.95991 0.80120 0.87045 1.86070 1.21573 1.74918 1.39849 1.18564 0.83885 1.04389 0.92695 1.20189 0.91817 1.03726 0.96743 1.20295 0.92016 1.07594 0.87568 1.98319 1.74638 1.97343 1.32705 1.20940 1.00964 1.00803 0.89749 1.20522 0.91629 0.99920 0.98648 1.18639 0.93139 0.99911 0.85930 1.41545 1.14836 1.44846 1.09494 1.19496 1.41129 1.02148 0.87174 0.90198 1.26262 0.97958 0.94384 1.00253 1.70103 1.39277 1.11577 1.29099 0.85019 0.78401 0.78068 0.77855 1.18884 1.17893 1.20250 1.22280 0.80995 0.83642 0.91408 1.90512 1.56235 1.63266 1.35279 0.93103 0.87424 0.89020 0.82268 0.83136 0.85912 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 9.14 71.98 0.66 -3.03 15 2 C 0.08 3.06 3.68 29.86 0.11 3.17 15 3 H 0.11 3.61 8.14 -2.39 -0.02 3.59 15 4 O -0.31 -12.28 10.09 -92.85 -0.94 -13.22 15 5 C 0.05 2.13 6.44 22.62 0.15 2.27 15 6 C -0.11 -3.62 9.78 22.35 0.22 -3.40 15 7 C -0.05 -1.53 6.32 22.36 0.14 -1.39 15 8 Cl -0.06 -1.56 28.95 -2.72 -0.08 -1.64 15 9 C -0.11 -3.70 9.82 22.31 0.22 -3.48 15 10 C -0.09 -3.69 7.70 22.36 0.17 -3.51 15 11 C 0.12 5.71 5.47 38.25 0.21 5.91 15 12 N -0.40 -20.96 2.75 -458.09 -1.26 -22.22 15 13 C -0.37 -20.59 8.32 84.03 0.70 -19.89 15 14 H 0.08 4.58 7.85 -2.91 -0.02 4.56 15 15 C 0.02 0.93 3.51 84.91 0.30 1.23 15 16 N -0.87 -45.98 11.45 21.65 0.25 -45.73 15 17 Si 0.99 40.00 29.58 68.60 2.03 42.03 15 18 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 19 H -0.25 -9.50 7.11 99.48 0.71 -8.79 15 20 H -0.28 -11.21 7.11 99.48 0.71 -10.51 15 21 C 0.43 21.29 7.33 87.62 0.64 21.93 15 22 O -0.57 -31.39 16.15 -3.02 -0.05 -31.44 15 23 H 0.05 1.72 8.14 -2.38 -0.02 1.70 15 24 H 0.11 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.09 2.71 7.86 -2.39 -0.02 2.69 15 26 H 0.16 4.56 8.06 -2.91 -0.02 4.54 15 27 H 0.15 4.41 8.06 -2.91 -0.02 4.39 15 28 H 0.12 5.58 6.11 -2.91 -0.02 5.56 15 29 H 0.28 13.77 8.31 -92.71 -0.77 13.00 15 Total: -1.00 -63.89 268.47 4.65 -59.24 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.19 Total: 13.18 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 3.51 Total: -0.20 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -1.01 Total: -67.95 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -0.99 Total: -44.66 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -63.89 4.65 -59.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084883291.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.385 kcal (2) G-P(sol) polarization free energy of solvation -63.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds