Wall clock time and date at job start Mon Mar 30 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.44247 * 2 1 4 4 O 1.43003 * 109.44118 * 240.06965 * 2 1 3 5 5 C 1.35934 * 116.70510 * 286.31136 * 4 2 1 6 6 C 1.38391 * 120.67315 * 147.21532 * 5 4 2 7 7 C 1.38411 * 119.86561 * 180.02562 * 6 5 4 8 8 Cl 1.73597 * 119.86696 * 179.97438 * 7 6 5 9 9 C 1.38452 * 120.26062 * 0.02562 * 7 6 5 10 10 C 1.38207 * 120.20221 * 359.97438 * 9 7 6 11 11 C 1.38641 * 119.82264 * 359.97438 * 10 9 7 12 12 N 1.39966 * 120.72816 * 180.02562 * 11 10 9 13 13 C 1.37096 * 120.49276 * 15.40316 * 12 11 10 14 14 H 1.08002 * 119.99498 * 221.96268 * 13 12 11 15 15 C 1.38868 * 119.99863 * 41.96383 * 13 12 11 16 16 N 1.31431 * 120.00264 * 15.52785 * 15 13 12 17 17 Si 1.86802 * 119.99614 * 195.52806 * 15 13 12 18 18 H 1.48497 * 109.47321 * 90.00237 * 17 15 13 19 19 H 1.48505 * 109.47025 * 210.00069 * 17 15 13 20 20 H 1.48500 * 109.47497 * 329.99862 * 17 15 13 21 21 C 1.35079 * 119.00854 * 195.43308 * 12 11 10 22 22 O 1.21290 * 120.12299 * 181.67983 * 21 12 11 23 23 H 1.09004 * 109.47252 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47137 * 299.92867 * 1 2 3 25 25 H 1.08997 * 109.47850 * 59.92980 * 1 2 3 26 26 H 1.07995 * 120.06485 * 0.09099 * 6 5 4 27 27 H 1.07997 * 119.89888 * 179.70167 * 9 7 6 28 28 H 1.07997 * 120.08268 * 179.97438 * 10 9 7 29 29 H 0.97003 * 119.99940 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 8 2.0060 -0.6728 -1.1686 5 6 1.8877 -2.0269 -1.1847 6 6 1.6596 -2.7016 -2.3713 7 6 1.5414 -4.0807 -2.3683 8 17 1.2546 -4.9270 -3.8567 9 6 1.6499 -4.7877 -1.1829 10 6 1.8776 -4.1208 0.0060 11 6 1.9981 -2.7396 0.0097 12 7 2.2294 -2.0450 1.2027 13 6 2.6505 -2.7107 2.3247 14 1 2.2288 -2.4653 3.2883 15 6 3.6194 -3.7003 2.2223 16 7 4.3483 -3.7961 1.1329 17 14 3.8864 -4.8953 3.6330 18 1 3.0110 -6.0808 3.4501 19 1 5.3070 -5.3275 3.6534 20 1 3.5537 -4.2277 4.9171 21 6 2.0308 -0.7093 1.2320 22 8 2.2542 -0.0828 2.2463 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5127 0.8906 25 1 -0.3635 0.5149 -0.8893 26 1 1.5751 -2.1533 -3.2979 27 1 1.5519 -5.8632 -1.1866 28 1 1.9615 -4.6741 0.9296 29 1 5.0253 -4.4872 1.0616 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084883292.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:54 Heat of formation + Delta-G solvation = -61.659230 kcal Electronic energy + Delta-G solvation = -18515.404284 eV Core-core repulsion = 15429.236741 eV Total energy + Delta-G solvation = -3086.167543 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.43747 -39.60658 -38.74641 -37.53985 -36.41624 -33.99839 -32.84688 -31.12132 -30.01441 -27.75539 -25.15110 -24.23121 -23.50910 -20.61963 -19.97439 -19.42304 -18.00815 -17.09804 -16.96484 -16.59600 -16.42916 -15.76510 -15.45929 -15.27509 -14.88031 -14.39004 -14.14843 -13.73609 -13.46556 -13.31853 -13.16736 -12.99836 -12.81774 -12.55030 -12.31995 -12.17635 -11.93259 -11.75558 -11.27427 -10.78905 -10.47243 -9.50737 -8.81240 -8.32601 -6.39131 0.13663 0.40731 1.17858 1.31817 1.37634 1.49878 1.64750 2.02414 2.33488 2.67671 2.72084 3.01628 3.32551 3.84975 3.89235 4.01187 4.17582 4.30512 4.52541 4.67289 4.69739 4.88658 5.03339 5.11641 5.24360 5.33942 5.40559 5.62807 5.91595 6.07616 6.35704 6.82342 7.06066 7.54295 8.52179 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.010013 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.198799 B = 2795.773062 C = 4260.347544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.082 3.918 3 H 0.159 0.841 4 O -0.307 6.307 5 C 0.056 3.944 6 C -0.106 4.106 7 C -0.047 4.047 8 Cl -0.060 7.060 9 C -0.106 4.106 10 C -0.087 4.087 11 C 0.124 3.876 12 N -0.393 5.393 13 C -0.375 4.375 14 H 0.080 0.920 15 C 0.019 3.981 16 N -0.867 5.867 17 Si 0.985 3.015 18 H -0.251 1.251 19 H -0.274 1.274 20 H -0.271 1.271 21 C 0.429 3.571 22 O -0.581 6.581 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.159 0.841 27 H 0.150 0.850 28 H 0.122 0.878 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.983 -2.028 -8.042 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 H 0.176 0.824 4 O -0.222 6.222 5 C 0.009 3.991 6 C -0.126 4.126 7 C -0.075 4.075 8 Cl -0.031 7.031 9 C -0.126 4.126 10 C -0.108 4.108 11 C 0.026 3.974 12 N -0.102 5.102 13 C -0.501 4.501 14 H 0.097 0.903 15 C -0.188 4.188 16 N -0.500 5.500 17 Si 0.807 3.193 18 H -0.176 1.176 19 H -0.199 1.199 20 H -0.195 1.195 21 C 0.220 3.780 22 O -0.464 6.464 23 H 0.069 0.931 24 H 0.102 0.898 25 H 0.128 0.872 26 H 0.177 0.823 27 H 0.168 0.832 28 H 0.140 0.860 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.625 -1.721 -7.800 10.378 hybrid contribution 0.608 -0.522 1.078 1.343 sum -6.018 -2.243 -6.723 9.297 Atomic orbital electron populations 1.22266 0.90936 1.03301 1.05439 1.22979 0.97812 0.97136 0.79814 0.82391 1.86121 1.79950 1.16047 1.40127 1.18512 1.05232 0.82782 0.92573 1.20201 1.03251 0.92332 0.96813 1.20296 1.08165 0.91460 0.87534 1.98319 1.94755 1.77277 1.32725 1.20930 1.01062 1.00785 0.89778 1.20524 0.99894 0.91828 0.98597 1.18602 0.99274 0.93621 0.85879 1.41487 1.54157 1.05193 1.09412 1.19470 1.23234 1.20169 0.87238 0.90254 1.26250 0.92614 0.99669 1.00266 1.70093 1.18520 1.32180 1.29200 0.85067 0.78257 0.78274 0.77730 1.17562 1.19943 1.19549 1.22231 0.81451 0.82959 0.91341 1.90532 1.54339 1.65822 1.35677 0.93083 0.89763 0.87172 0.82302 0.83215 0.85990 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.73 9.30 71.98 0.67 -4.06 15 2 C 0.08 3.05 3.81 29.85 0.11 3.17 15 3 H 0.16 5.09 8.14 -2.39 -0.02 5.07 15 4 O -0.31 -12.04 10.18 -92.80 -0.94 -12.98 15 5 C 0.06 2.27 5.85 22.62 0.13 2.40 15 6 C -0.11 -3.62 9.78 22.35 0.22 -3.40 15 7 C -0.05 -1.52 6.32 22.36 0.14 -1.37 15 8 Cl -0.06 -1.57 28.95 -2.72 -0.08 -1.64 15 9 C -0.11 -3.72 9.82 22.31 0.22 -3.50 15 10 C -0.09 -3.72 7.70 22.36 0.17 -3.55 15 11 C 0.12 5.75 5.47 38.25 0.21 5.96 15 12 N -0.39 -20.57 2.75 -458.13 -1.26 -21.83 15 13 C -0.37 -20.64 8.32 84.02 0.70 -19.94 15 14 H 0.08 4.55 7.85 -2.91 -0.02 4.52 15 15 C 0.02 0.97 3.50 84.90 0.30 1.26 15 16 N -0.87 -45.86 11.45 21.65 0.25 -45.61 15 17 Si 0.99 39.97 29.58 68.60 2.03 42.00 15 18 H -0.25 -9.36 7.11 99.48 0.71 -8.65 15 19 H -0.27 -10.85 7.11 99.48 0.71 -10.15 15 20 H -0.27 -11.14 7.11 99.48 0.71 -10.44 15 21 C 0.43 21.38 6.87 87.62 0.60 21.98 15 22 O -0.58 -32.45 17.09 -3.06 -0.05 -32.50 15 23 H 0.05 1.62 7.81 -2.38 -0.02 1.60 15 24 H 0.08 2.32 8.14 -2.39 -0.02 2.31 15 25 H 0.11 2.44 8.14 -2.39 -0.02 2.42 15 26 H 0.16 4.50 8.06 -2.91 -0.02 4.48 15 27 H 0.15 4.38 8.06 -2.91 -0.02 4.35 15 28 H 0.12 5.53 6.10 -2.91 -0.02 5.52 15 29 H 0.28 13.80 8.31 -92.71 -0.77 13.03 15 Total: -1.00 -64.18 268.67 4.60 -59.57 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.19 Total: 14.06 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 3.47 Total: -1.06 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -1.01 Total: -67.44 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -1.00 Total: -45.48 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.64 kcal Total: -64.18 4.60 -59.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084883292.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.085 kcal (2) G-P(sol) polarization free energy of solvation -64.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds