Wall clock time and date at job start Mon Mar 30 2020 04:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99648 * 2 1 4 4 H 1.48501 * 109.47450 * 270.00195 * 3 2 1 5 5 H 1.48496 * 109.47214 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46765 * 150.00092 * 3 2 1 7 7 C 1.38947 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99955 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00047 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99913 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00053 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99766 * 179.97438 * 10 9 7 13 13 S 1.81400 * 109.46969 * 180.02562 * 12 10 9 14 14 C 1.76202 * 103.00007 * 180.02562 * 13 12 10 15 15 C 1.38999 * 120.07816 * 0.02562 * 14 13 12 16 16 C 1.38054 * 119.91488 * 179.97438 * 15 14 13 17 17 C 1.38327 * 120.08269 * 359.72915 * 16 15 14 18 18 C 1.38278 * 120.15806 * 0.54608 * 17 16 15 19 19 C 1.50699 * 119.95736 * 179.72947 * 18 17 16 20 20 O 1.42903 * 109.47152 * 269.72851 * 19 18 17 21 21 C 1.38102 * 120.08105 * 359.45120 * 18 17 16 22 22 H 0.96996 * 120.00433 * 359.97438 * 1 2 3 23 23 H 0.97001 * 119.99682 * 0.02562 * 9 7 2 24 24 H 1.09003 * 109.46728 * 60.00515 * 12 10 9 25 25 H 1.09002 * 109.47194 * 300.00505 * 12 10 9 26 26 H 1.07997 * 120.04091 * 359.95669 * 15 14 13 27 27 H 1.08001 * 119.95779 * 180.02562 * 16 15 14 28 28 H 1.08008 * 119.91903 * 180.29582 * 17 16 15 29 29 H 1.08997 * 109.47198 * 149.72529 * 19 18 17 30 30 H 1.09008 * 109.47393 * 29.72246 * 19 18 17 31 31 H 0.96700 * 114.00311 * 180.02562 * 20 19 18 32 32 H 1.08004 * 120.03657 * 180.25086 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4208 -0.0011 12 6 5.5608 -2.3704 -0.0022 13 16 6.1655 -4.0806 -0.0027 14 6 7.9163 -3.8820 -0.0033 15 6 8.4729 -2.6083 -0.0028 16 6 9.8451 -2.4566 -0.0027 17 6 10.6658 -3.5701 0.0025 18 6 10.1155 -4.8387 -0.0037 19 6 11.0139 -6.0486 -0.0042 20 8 11.2980 -6.4305 -1.3516 21 6 8.7438 -4.9982 -0.0038 22 1 -0.4850 0.8400 0.0004 23 1 3.8648 -0.3632 -0.0007 24 1 5.9247 -1.8562 0.8873 25 1 5.9234 -1.8568 -0.8927 26 1 7.8327 -1.7385 -0.0027 27 1 10.2783 -1.4673 -0.0019 28 1 11.7390 -3.4483 0.0074 29 1 10.5160 -6.8710 0.5093 30 1 11.9452 -5.8100 0.5097 31 1 11.8724 -7.2046 -1.4283 32 1 8.3148 -5.9894 -0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085537428.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:43 Heat of formation + Delta-G solvation = -56.832573 kcal Electronic energy + Delta-G solvation = -16713.548766 eV Core-core repulsion = 13765.467323 eV Total energy + Delta-G solvation = -2948.081443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39228 -38.42703 -36.83044 -34.15027 -32.12176 -31.78711 -31.06682 -29.60135 -26.18579 -24.59126 -22.96246 -21.57769 -19.68014 -18.64837 -17.74329 -17.31312 -16.33993 -15.98208 -15.71859 -14.99720 -14.84001 -14.66164 -14.10909 -13.82479 -13.48075 -13.30903 -13.12741 -12.76962 -12.41230 -12.20046 -12.16080 -11.49612 -11.26261 -11.13061 -10.68414 -10.39010 -10.07308 -9.93192 -9.73665 -9.70396 -9.04010 -8.78903 -8.31432 -7.20730 -6.41067 -3.93718 1.07629 1.22969 1.57995 2.62301 2.95337 3.00316 3.09340 3.45882 3.52533 4.01408 4.20026 4.43040 4.65149 4.71893 4.91732 4.99143 5.05675 5.11014 5.18587 5.39036 5.39507 5.41922 5.68282 5.72842 5.84287 6.17582 6.26282 6.39348 6.77132 7.30202 7.42999 7.99546 8.43782 8.81337 9.28308 9.62890 10.71334 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.041734 B = 0.003654 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.747878 B = 7660.032779 C = 8233.099121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.577 5.577 10 C 0.462 3.538 11 O -0.559 6.559 12 C -0.139 4.139 13 S -0.024 6.024 14 C -0.098 4.098 15 C -0.133 4.133 16 C -0.102 4.102 17 C -0.115 4.115 18 C -0.078 4.078 19 C 0.118 3.882 20 O -0.566 6.566 21 C -0.083 4.083 22 H 0.276 0.724 23 H 0.373 0.627 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.379 0.621 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.561 -4.932 0.930 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.216 5.216 10 C 0.246 3.754 11 O -0.442 6.442 12 C -0.291 4.291 13 S 0.221 5.779 14 C -0.212 4.212 15 C -0.158 4.158 16 C -0.121 4.121 17 C -0.136 4.136 18 C -0.080 4.080 19 C 0.041 3.959 20 O -0.372 6.372 21 C -0.107 4.107 22 H 0.086 0.914 23 H 0.206 0.794 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.226 0.774 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.702 -5.966 0.808 22.521 hybrid contribution 1.730 2.295 0.170 2.878 sum 23.431 -3.672 0.978 23.737 Atomic orbital electron populations 1.69613 1.05666 1.27771 1.48298 1.25048 0.95518 0.98063 0.97266 0.86674 0.79811 0.83914 0.79053 1.19415 1.19938 1.19447 1.19459 0.78812 0.96879 1.48582 0.85998 1.42082 1.07627 1.05789 1.66058 1.18749 0.86183 0.85102 0.85348 1.90612 1.68675 1.30551 1.54354 1.23802 1.00249 0.98844 1.06239 1.86261 0.92516 1.08305 1.90769 1.22333 0.99670 0.96187 1.02976 1.21282 0.95908 0.95857 1.02717 1.21024 0.93115 0.98688 0.99321 1.20969 0.99626 0.91834 1.01177 1.19476 0.93185 0.94167 1.01184 1.20973 0.96860 0.94240 0.83830 1.86594 1.72502 1.51824 1.26297 1.20581 0.92039 0.97656 1.00412 0.91372 0.79432 0.87898 0.87877 0.85720 0.85716 0.86061 0.92569 0.92694 0.77386 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.14 13.96 55.50 0.77 -24.36 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.91 27.74 -169.99 -4.71 14.19 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 7 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 9 N -0.58 -13.57 5.09 -10.96 -0.06 -13.63 16 10 C 0.46 10.51 7.80 -10.99 -0.09 10.42 16 11 O -0.56 -15.10 15.44 5.55 0.09 -15.01 16 12 C -0.14 -2.35 4.82 36.01 0.17 -2.17 16 13 S -0.02 -0.41 21.06 -107.50 -2.26 -2.67 16 14 C -0.10 -1.41 6.11 -39.04 -0.24 -1.64 16 15 C -0.13 -1.69 9.36 -39.37 -0.37 -2.06 16 16 C -0.10 -1.11 10.04 -39.62 -0.40 -1.51 16 17 C -0.11 -1.22 9.70 -39.53 -0.38 -1.60 16 18 C -0.08 -0.89 5.51 -104.66 -0.58 -1.47 16 19 C 0.12 1.00 7.17 36.01 0.26 1.26 16 20 O -0.57 -5.23 13.64 -35.23 -0.48 -5.71 16 21 C -0.08 -1.08 9.45 -39.37 -0.37 -1.45 16 22 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 24 H 0.10 1.47 7.75 -51.92 -0.40 1.07 16 25 H 0.10 1.48 7.75 -51.92 -0.40 1.08 16 26 H 0.12 1.43 5.88 -52.49 -0.31 1.12 16 27 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 29 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.05 0.35 8.08 -51.92 -0.42 -0.07 16 31 H 0.38 1.50 9.12 45.56 0.42 1.92 16 32 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 295.57 15.07 4.45 4.45 Total: -1.00 -33.99 295.57 -7.04 -41.02 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -2.60 Total: 9.59 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.24 Total: -7.87 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.72 Total: -37.99 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.39 Total: -20.72 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.19 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.26 Total: -2.67 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.99 -7.04 -41.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085537428.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.810 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds