Wall clock time and date at job start Mon Mar 30 2020 05:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31237 * 124.05526 * 2 1 4 4 N 1.27340 * 120.03743 * 179.73140 * 3 2 1 5 5 S 1.56636 * 109.73776 * 0.51916 * 4 3 2 6 6 C 1.38238 * 124.05474 * 180.29613 * 2 1 3 7 7 C 1.47173 * 128.47672 * 0.02562 * 6 2 1 8 8 O 1.21621 * 119.99883 * 352.72324 * 7 6 2 9 9 N 1.34779 * 120.00000 * 172.72733 * 7 6 2 10 10 C 1.46501 * 120.00265 * 4.69121 * 9 7 6 11 11 C 1.50703 * 109.46759 * 82.64598 * 10 9 7 12 12 H 1.07994 * 120.00437 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99530 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00072 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00027 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47180 * 60.00167 * 15 13 11 17 17 H 1.48496 * 109.47363 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47338 * 300.00360 * 15 13 11 19 19 C 1.46500 * 119.99881 * 184.68994 * 9 7 6 20 20 C 1.53007 * 117.49879 * 16.75259 * 19 9 7 21 21 C 1.53005 * 117.49968 * 308.09172 * 19 9 7 22 22 H 1.09007 * 109.47011 * 269.70475 * 1 2 3 23 23 H 1.08998 * 109.47130 * 29.70415 * 1 2 3 24 24 H 1.08995 * 109.47436 * 149.70693 * 1 2 3 25 25 H 1.08998 * 109.47153 * 202.64739 * 10 9 7 26 26 H 1.09003 * 109.46734 * 322.65096 * 10 9 7 27 27 H 0.97001 * 119.99940 * 179.97438 * 14 13 11 28 28 H 1.08999 * 115.54923 * 162.41894 * 19 9 7 29 29 H 1.08995 * 117.49554 * 359.97438 * 20 19 9 30 30 H 1.08999 * 117.49434 * 145.02237 * 20 19 9 31 31 H 1.08997 * 117.50094 * 214.97699 * 21 19 9 32 32 H 1.08994 * 117.49929 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 0.0052 5 16 3.9366 -0.5097 -0.0026 6 6 2.2812 -1.1453 -0.0059 7 6 1.8394 -2.5491 -0.0137 8 8 0.6602 -2.8163 0.1178 9 7 2.7416 -3.5387 -0.1665 10 6 4.1714 -3.2243 -0.2217 11 6 4.7081 -3.0789 1.1790 12 1 4.0501 -3.2080 2.0256 13 6 6.0395 -2.7818 1.3797 14 7 6.8409 -2.6250 0.3487 15 14 6.7050 -2.6021 3.1158 16 1 6.5056 -3.8738 3.8564 17 1 8.1543 -2.2834 3.0599 18 1 5.9840 -1.5059 3.8114 19 6 2.2924 -4.9287 -0.2773 20 6 0.8178 -5.1706 -0.6061 21 6 1.3446 -5.4532 0.8032 22 1 -0.3633 -0.0053 1.0277 23 1 -0.3633 0.8926 -0.5092 24 1 -0.3634 -0.8873 -0.5183 25 1 4.7009 -4.0289 -0.7319 26 1 4.3174 -2.2910 -0.7655 27 1 7.7774 -2.4156 0.4899 28 1 3.0210 -5.6267 -0.6897 29 1 0.1818 -4.2955 -0.7394 30 1 0.5763 -6.0280 -1.2343 31 1 1.4493 -6.4964 1.1014 32 1 1.0555 -4.7642 1.5967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087428312.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:17 Heat of formation + Delta-G solvation = 75.698940 kcal Electronic energy + Delta-G solvation = -18597.106752 eV Core-core repulsion = 15687.065057 eV Total energy + Delta-G solvation = -2910.041694 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20214 -39.50319 -35.93082 -34.62466 -32.57356 -32.36209 -27.95058 -27.41387 -26.17421 -23.48153 -22.94301 -21.94023 -20.78983 -18.52676 -17.73286 -17.03627 -16.47743 -15.36541 -15.23802 -14.82750 -14.67411 -14.21361 -13.66491 -13.19456 -12.73606 -12.63033 -12.47124 -12.34514 -12.11632 -11.72044 -11.34609 -11.09734 -10.95199 -10.76818 -10.71577 -10.46603 -9.95752 -9.87836 -9.21421 -9.13737 -8.96514 -8.83575 -8.63366 -7.78585 -6.48547 -4.54944 0.53325 1.74630 2.43472 2.62171 3.10502 3.16393 3.18934 3.49148 3.55985 4.10496 4.42423 4.62280 4.84806 5.00965 5.25827 5.34933 5.51044 5.53980 5.86993 5.92501 6.03875 6.08882 6.10983 6.30664 6.45093 6.50926 6.70771 6.78107 7.30905 7.47452 7.63223 7.93487 8.44536 8.49457 8.68457 9.08910 10.55716 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.010841 C = 0.007071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.288690 B = 2582.093157 C = 3958.885540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.076 3.924 3 N -0.283 5.283 4 N -0.352 5.352 5 S 0.582 5.418 6 C -0.328 4.328 7 C 0.605 3.395 8 O -0.545 6.545 9 N -0.563 5.563 10 C 0.234 3.766 11 C -0.540 4.540 12 H 0.069 0.931 13 C 0.075 3.925 14 N -0.872 5.872 15 Si 0.892 3.108 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.272 1.272 19 C 0.088 3.912 20 C -0.201 4.201 21 C -0.185 4.185 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.274 0.726 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 -2.051 -2.055 6.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 N -0.145 5.145 4 N -0.331 5.331 5 S 0.725 5.275 6 C -0.468 4.468 7 C 0.393 3.607 8 O -0.427 6.427 9 N -0.292 5.292 10 C 0.111 3.889 11 C -0.582 4.582 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.508 5.508 15 Si 0.719 3.281 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.197 1.197 19 C -0.017 4.017 20 C -0.238 4.238 21 C -0.224 4.224 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.726 -0.868 -2.082 5.237 hybrid contribution -0.535 -0.635 1.071 1.355 sum -5.261 -1.503 -1.012 5.564 Atomic orbital electron populations 1.20281 0.85175 1.03589 1.03356 1.22729 0.99547 0.86142 0.99085 1.70744 0.97788 1.28281 1.17697 1.78114 1.09144 1.24718 1.21151 1.84705 1.05923 0.92942 1.43979 1.27664 0.99767 0.99570 1.19774 1.16520 0.85044 0.82408 0.76710 1.90536 1.17047 1.82830 1.52291 1.47439 1.08740 1.04335 1.68641 1.19736 0.74248 0.96699 0.98170 1.21499 0.94925 1.49795 0.91998 0.91277 1.24932 0.96361 0.94101 0.97790 1.69878 1.06063 1.44831 1.30077 0.86596 0.78287 0.79355 0.83897 1.19565 1.20530 1.19693 1.21539 0.92661 0.83544 1.03958 1.23861 0.97429 1.04391 0.98135 1.23157 1.04754 1.01106 0.93369 0.90379 0.90985 0.89053 0.92384 0.95113 0.91655 0.85446 0.84659 0.89860 0.89184 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 9.83 36.01 0.35 -0.63 16 2 C 0.08 1.46 7.00 -82.84 -0.58 0.88 16 3 N -0.28 -5.85 11.54 33.42 0.39 -5.47 16 4 N -0.35 -7.50 12.51 60.35 0.75 -6.74 16 5 S 0.58 12.09 17.59 -107.50 -1.89 10.20 16 6 C -0.33 -6.68 6.49 -35.96 -0.23 -6.91 16 7 C 0.61 12.31 7.38 -12.63 -0.09 12.22 16 8 O -0.55 -11.01 10.74 5.26 0.06 -10.95 16 9 N -0.56 -11.17 2.85 -168.82 -0.48 -11.65 16 10 C 0.23 5.01 4.79 -5.19 -0.02 4.99 16 11 C -0.54 -12.58 7.45 -34.44 -0.26 -12.84 16 12 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 13 C 0.08 1.77 5.33 -17.82 -0.09 1.67 16 14 N -0.87 -21.04 13.29 55.43 0.74 -20.30 16 15 Si 0.89 19.01 29.54 -169.99 -5.02 13.99 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 C 0.09 1.50 6.61 -67.92 -0.45 1.05 16 20 C -0.20 -3.12 9.63 -26.69 -0.26 -3.37 16 21 C -0.19 -2.98 9.88 -26.69 -0.26 -3.24 16 22 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.09 1.41 6.64 -51.93 -0.34 1.07 16 25 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 26 H 0.03 0.69 4.34 -23.58 -0.10 0.59 16 27 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 28 H 0.13 1.95 8.03 -51.93 -0.42 1.54 16 29 H 0.14 2.37 5.19 -52.21 -0.27 2.10 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.73 7.61 -51.93 -0.40 1.33 16 LS Contribution 282.19 15.07 4.25 4.25 Total: -1.00 -25.43 282.19 -6.28 -31.71 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -3.18 Total: 1.13 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.90 Total: -6.18 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 1.40 Total: -44.16 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.06 Total: -10.95 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Atomic # 16 Polarization: 12.09 SS G_CDS: -1.89 Total: 10.20 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -25.43 -6.28 -31.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087428312.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.409 kcal (2) G-P(sol) polarization free energy of solvation -25.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds