Wall clock time and date at job start Mon Mar 30 2020 05:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31237 * 124.05526 * 2 1 4 4 N 1.27340 * 120.03743 * 179.73140 * 3 2 1 5 5 S 1.56636 * 109.73776 * 0.51916 * 4 3 2 6 6 C 1.38238 * 124.05474 * 180.29613 * 2 1 3 7 7 C 1.47173 * 128.47672 * 0.02562 * 6 2 1 8 8 O 1.21621 * 119.99883 * 352.72324 * 7 6 2 9 9 N 1.34779 * 120.00000 * 172.72733 * 7 6 2 10 10 C 1.46501 * 120.00265 * 4.69121 * 9 7 6 11 11 C 1.50703 * 109.46759 * 82.64598 * 10 9 7 12 12 H 1.07994 * 120.00437 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99530 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00072 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00027 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47180 * 60.00167 * 15 13 11 17 17 H 1.48496 * 109.47363 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47338 * 300.00360 * 15 13 11 19 19 C 1.46500 * 119.99881 * 184.68994 * 9 7 6 20 20 C 1.53007 * 117.49879 * 16.75259 * 19 9 7 21 21 C 1.53005 * 117.49968 * 308.09172 * 19 9 7 22 22 H 1.09007 * 109.47011 * 269.70475 * 1 2 3 23 23 H 1.08998 * 109.47130 * 29.70415 * 1 2 3 24 24 H 1.08995 * 109.47436 * 149.70693 * 1 2 3 25 25 H 1.08998 * 109.47153 * 202.64739 * 10 9 7 26 26 H 1.09003 * 109.46734 * 322.65096 * 10 9 7 27 27 H 0.97001 * 119.99940 * 179.97438 * 14 13 11 28 28 H 1.08999 * 115.54923 * 162.41894 * 19 9 7 29 29 H 1.08995 * 117.49554 * 359.97438 * 20 19 9 30 30 H 1.08999 * 117.49434 * 145.02237 * 20 19 9 31 31 H 1.08997 * 117.50094 * 214.97699 * 21 19 9 32 32 H 1.08994 * 117.49929 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 0.0052 5 16 3.9366 -0.5097 -0.0026 6 6 2.2812 -1.1453 -0.0059 7 6 1.8394 -2.5491 -0.0137 8 8 0.6602 -2.8163 0.1178 9 7 2.7416 -3.5387 -0.1665 10 6 4.1714 -3.2243 -0.2217 11 6 4.7081 -3.0789 1.1790 12 1 4.0501 -3.2080 2.0256 13 6 6.0395 -2.7818 1.3797 14 7 6.8409 -2.6250 0.3487 15 14 6.7050 -2.6021 3.1158 16 1 6.5056 -3.8738 3.8564 17 1 8.1543 -2.2834 3.0599 18 1 5.9840 -1.5059 3.8114 19 6 2.2924 -4.9287 -0.2773 20 6 0.8178 -5.1706 -0.6061 21 6 1.3446 -5.4532 0.8032 22 1 -0.3633 -0.0053 1.0277 23 1 -0.3633 0.8926 -0.5092 24 1 -0.3634 -0.8873 -0.5183 25 1 4.7009 -4.0289 -0.7319 26 1 4.3174 -2.2910 -0.7655 27 1 7.7774 -2.4156 0.4899 28 1 3.0210 -5.6267 -0.6897 29 1 0.1818 -4.2955 -0.7394 30 1 0.5763 -6.0280 -1.2343 31 1 1.4493 -6.4964 1.1014 32 1 1.0555 -4.7642 1.5967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087428312.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:16 Heat of formation + Delta-G solvation = 61.490024 kcal Electronic energy + Delta-G solvation = -18597.722896 eV Core-core repulsion = 15687.065057 eV Total energy + Delta-G solvation = -2910.657839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78082 -41.04224 -37.38780 -36.21311 -34.26980 -33.87598 -29.50267 -29.04306 -27.71861 -25.15134 -24.49527 -23.19443 -22.28657 -20.09195 -19.27600 -18.79963 -18.07805 -16.93339 -16.77587 -16.44662 -16.19490 -15.77660 -15.11714 -14.72493 -14.36764 -14.09691 -13.84464 -13.74686 -13.68154 -13.28141 -12.98204 -12.77320 -12.44398 -12.26849 -12.20361 -12.10789 -11.57195 -11.21648 -10.86515 -10.77043 -10.55033 -10.40900 -10.33802 -9.31072 -8.28086 -6.39580 -1.08277 0.14379 0.80397 1.04247 1.39630 1.44339 1.48190 1.92866 2.04134 2.36321 3.02930 3.08574 3.13640 3.51258 3.77006 4.02854 4.18964 4.25139 4.45443 4.65424 4.73664 4.78060 4.86230 4.90386 5.01461 5.13688 5.24616 5.44785 5.61623 5.84856 5.87977 6.32052 6.66600 6.85675 7.09558 7.27876 8.75218 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.010841 C = 0.007071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.288690 B = 2582.093157 C = 3958.885540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.079 3.921 3 N -0.291 5.291 4 N -0.361 5.361 5 S 0.568 5.432 6 C -0.336 4.336 7 C 0.599 3.401 8 O -0.546 6.546 9 N -0.565 5.565 10 C 0.242 3.758 11 C -0.546 4.546 12 H 0.054 0.946 13 C 0.049 3.951 14 N -0.891 5.891 15 Si 0.930 3.070 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.278 1.278 19 C 0.063 3.937 20 C -0.183 4.183 21 C -0.182 4.182 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.030 0.970 27 H 0.275 0.725 28 H 0.145 0.855 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 -2.710 -2.088 7.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.072 4.072 3 N -0.153 5.153 4 N -0.340 5.340 5 S 0.709 5.291 6 C -0.476 4.476 7 C 0.387 3.613 8 O -0.428 6.428 9 N -0.293 5.293 10 C 0.118 3.882 11 C -0.587 4.587 12 H 0.072 0.928 13 C -0.156 4.156 14 N -0.528 5.528 15 Si 0.756 3.244 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.204 1.204 19 C -0.040 4.040 20 C -0.221 4.221 21 C -0.221 4.221 22 H 0.109 0.891 23 H 0.114 0.886 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.163 0.837 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.678 -1.552 -2.111 6.254 hybrid contribution -0.338 -0.411 1.065 1.190 sum -6.016 -1.962 -1.046 6.414 Atomic orbital electron populations 1.20429 0.82396 1.04792 1.04486 1.23323 1.01116 0.85286 0.97463 1.70759 0.97652 1.28929 1.17967 1.78103 1.09660 1.24924 1.21284 1.84749 1.06765 0.93007 1.44579 1.27876 0.99481 1.00185 1.20057 1.16578 0.85210 0.82481 0.77016 1.90547 1.16889 1.82883 1.52482 1.47455 1.07985 1.05537 1.68360 1.19530 0.75149 0.96398 0.97120 1.21488 0.94854 1.50025 0.92328 0.92794 1.25331 0.96560 0.93992 0.99720 1.69917 1.06241 1.45633 1.30996 0.86011 0.77998 0.78975 0.81431 1.19383 1.19969 1.20371 1.21928 0.94102 0.82477 1.05527 1.23816 0.95472 1.04680 0.98101 1.23172 1.04094 1.01950 0.92864 0.89083 0.88584 0.89021 0.92804 0.95378 0.91539 0.83721 0.86572 0.86599 0.86458 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.75 9.83 71.24 0.70 -1.05 16 2 C 0.08 2.94 7.00 42.65 0.30 3.24 16 3 N -0.29 -11.74 11.54 -48.18 -0.56 -12.30 16 4 N -0.36 -15.24 12.51 37.02 0.46 -14.77 16 5 S 0.57 23.60 17.59 -56.49 -0.99 22.61 16 6 C -0.34 -13.51 6.49 24.62 0.16 -13.35 16 7 C 0.60 24.00 7.38 86.59 0.64 24.64 16 8 O -0.55 -21.48 10.74 -4.10 -0.04 -21.53 16 9 N -0.57 -22.06 2.85 -806.26 -2.29 -24.36 16 10 C 0.24 10.31 4.79 85.63 0.41 10.72 16 11 C -0.55 -25.40 7.45 25.60 0.19 -25.21 16 12 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 13 C 0.05 2.29 5.33 84.66 0.45 2.74 16 14 N -0.89 -42.82 13.29 21.45 0.28 -42.54 16 15 Si 0.93 38.55 29.54 68.60 2.03 40.58 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 19 C 0.06 2.07 6.61 45.00 0.30 2.36 16 20 C -0.18 -5.26 9.63 30.62 0.30 -4.96 16 21 C -0.18 -5.51 9.88 30.62 0.30 -5.21 16 22 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 23 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.09 2.66 6.64 -2.39 -0.02 2.64 16 25 H 0.05 2.33 7.93 -2.39 -0.02 2.32 16 26 H 0.03 1.28 4.34 -20.41 -0.09 1.19 16 27 H 0.28 12.68 8.31 -92.71 -0.77 11.91 16 28 H 0.15 4.14 8.03 -2.39 -0.02 4.12 16 29 H 0.12 3.87 5.19 -6.78 -0.04 3.84 16 30 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.07 2.49 7.61 -2.39 -0.02 2.48 16 Total: -1.00 -52.60 282.19 3.68 -48.92 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.05 Total: 9.48 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 3.74 Total: -6.09 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -2.10 Total: -93.97 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.04 Total: -21.53 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Atomic # 16 Polarization: 23.60 SS G_CDS: -0.99 Total: 22.61 kcal Total: -52.60 3.68 -48.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087428312.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.407 kcal (2) G-P(sol) polarization free energy of solvation -52.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds