Wall clock time and date at job start Mon Mar 30 2020 04:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34942 * 117.00204 * 2 1 4 4 O 1.21669 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.46118 * 120.00033 * 179.97438 * 3 2 1 6 6 C 1.36998 * 126.12476 * 180.02562 * 5 3 2 7 7 N 1.30661 * 114.00803 * 180.02562 * 6 5 3 8 8 C 1.30345 * 117.30363 * 0.02562 * 7 6 5 9 9 N 1.37659 * 124.74005 * 180.02562 * 8 7 6 10 10 C 1.36853 * 120.00153 * 0.02562 * 9 8 7 11 11 H 1.08004 * 119.99744 * 341.83186 * 10 9 8 12 12 C 1.38857 * 120.00045 * 161.83340 * 10 9 8 13 13 N 1.31509 * 119.99823 * 337.76366 * 12 10 9 14 14 Si 1.86797 * 119.99970 * 157.76288 * 12 10 9 15 15 H 1.48499 * 109.47423 * 59.99965 * 14 12 10 16 16 H 1.48493 * 109.47158 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.47075 * 299.99894 * 14 12 10 18 18 C 1.46500 * 119.99757 * 180.29768 * 9 8 7 19 19 C 1.47199 * 109.47325 * 275.63372 * 18 9 8 20 20 N 6.83479 * 153.99003 * 125.75549 * 2 1 3 21 21 S 1.70921 * 110.51898 * 0.26044 * 8 7 6 22 22 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46960 * 299.99441 * 1 2 3 24 24 H 1.09004 * 109.47318 * 59.99542 * 1 2 3 25 25 H 1.08004 * 122.99844 * 0.07933 * 6 5 3 26 26 H 0.96997 * 120.00024 * 180.02562 * 13 12 10 27 27 H 1.09009 * 109.47545 * 35.63153 * 18 9 8 28 28 H 1.09001 * 109.47302 * 155.62855 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2023 0.0000 4 8 1.3791 2.2227 0.0005 5 6 3.5009 1.2787 0.0006 6 6 4.2495 2.4261 0.0011 7 7 5.5397 2.2190 0.0010 8 6 5.9464 0.9806 -0.0001 9 7 7.2660 0.5884 0.0001 10 6 8.2596 1.5295 0.0022 11 1 8.0407 2.5465 -0.2881 12 6 9.5491 1.1767 0.3774 13 7 9.7485 0.1150 1.1273 14 14 11.0006 2.2104 -0.1831 15 1 10.8461 3.5973 0.3244 16 1 12.2585 1.6260 0.3472 17 1 11.0513 2.2291 -1.6672 18 6 7.6065 -0.8364 -0.0078 19 6 7.5854 -1.3537 1.3701 20 7 7.5716 -1.7514 2.4323 21 16 4.6126 -0.0881 -0.0085 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 3.8124 3.4137 0.0025 26 1 10.6493 -0.1312 1.3897 27 1 6.8798 -1.3805 -0.6113 28 1 8.6023 -0.9697 -0.4307 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087663792.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:21 Heat of formation + Delta-G solvation = 3.360264 kcal Electronic energy + Delta-G solvation = -17279.102899 eV Core-core repulsion = 14230.091270 eV Total energy + Delta-G solvation = -3049.011629 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74419 -38.87712 -37.18980 -35.79889 -35.08488 -32.72618 -29.63052 -28.24908 -27.12918 -25.82312 -23.16014 -21.66343 -19.67819 -18.57196 -17.83301 -16.94545 -16.62627 -15.90582 -15.76122 -15.43442 -14.72812 -14.31120 -13.85715 -13.65535 -13.34570 -12.87846 -12.79650 -12.43712 -12.08190 -11.83457 -11.73192 -11.52356 -11.07168 -10.99769 -10.79234 -10.51595 -10.35345 -10.26418 -10.00401 -9.17797 -8.64857 -8.44313 -7.39651 -7.14760 -4.37265 1.22285 2.07255 2.70051 2.83334 2.90452 2.93532 3.10255 3.21144 3.39336 3.62279 3.71691 3.98459 4.22392 4.36444 4.77315 5.35300 5.41158 5.43781 5.58122 5.67478 5.89718 5.93073 6.27947 6.72708 6.81596 6.93195 7.05795 7.78988 8.29860 8.38661 8.43772 8.50524 8.94029 9.81053 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.005595 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.822160 B = 5002.834019 C = 5693.069286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.359 6.359 3 C 0.555 3.445 4 O -0.543 6.543 5 C -0.417 4.417 6 C 0.224 3.776 7 N -0.570 5.570 8 C 0.259 3.741 9 N -0.343 5.343 10 C -0.282 4.282 11 H 0.130 0.870 12 C 0.034 3.966 13 N -0.837 5.837 14 Si 0.947 3.053 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.263 1.263 18 C 0.221 3.779 19 C 0.236 3.764 20 N -0.441 5.441 21 S 0.052 5.948 22 H 0.093 0.907 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.169 0.831 26 H 0.289 0.711 27 H 0.098 0.902 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 -2.685 -5.358 7.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.276 6.276 3 C 0.405 3.595 4 O -0.436 6.436 5 C -0.544 4.544 6 C 0.054 3.946 7 N -0.296 5.296 8 C -0.105 4.105 9 N -0.031 5.031 10 C -0.415 4.415 11 H 0.147 0.853 12 C -0.178 4.178 13 N -0.470 5.470 14 Si 0.771 3.229 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.187 1.187 18 C 0.094 3.906 19 C -0.083 4.083 20 N -0.120 5.120 21 S 0.298 5.702 22 H 0.112 0.888 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.186 0.814 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.192 -4.036 -3.684 6.329 hybrid contribution 0.177 1.521 -0.423 1.588 sum -3.016 -2.515 -4.107 5.682 Atomic orbital electron populations 1.22726 0.78185 1.02726 1.01849 1.86213 1.22153 1.33751 1.85491 1.19408 0.87009 0.80732 0.72379 1.90792 1.66264 1.35751 1.50821 1.23157 0.92516 0.95741 1.42944 1.21864 0.86373 0.97729 0.88672 1.66056 1.14528 1.18238 1.30784 1.23536 0.90075 0.92360 1.04561 1.42340 1.00563 1.04940 1.55275 1.20363 0.85609 0.94272 1.41245 0.85290 1.25729 1.00183 0.97822 0.94050 1.69919 1.25129 1.25474 1.26430 0.85614 0.77853 0.79749 0.79705 1.18830 1.20272 1.18741 1.18990 1.05117 0.79640 0.86844 1.28635 0.91528 0.93127 0.95039 1.80867 1.10578 1.09361 1.11174 1.83294 0.96646 1.10156 1.80083 0.88827 0.92724 0.92715 0.81380 0.89945 0.88387 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.45 101.05 1.06 1.58 15 2 O -0.36 -6.32 10.36 -41.16 -0.43 -6.75 15 3 C 0.56 11.05 7.90 33.89 0.27 11.32 15 4 O -0.54 -11.48 16.64 -19.39 -0.32 -11.80 15 5 C -0.42 -8.54 6.51 -36.87 -0.24 -8.78 15 6 C 0.22 4.59 11.15 -18.50 -0.21 4.38 15 7 N -0.57 -12.68 9.77 -14.76 -0.14 -12.82 15 8 C 0.26 5.56 7.61 -88.06 -0.67 4.89 15 9 N -0.34 -7.19 2.66 -120.36 -0.32 -7.51 15 10 C -0.28 -6.16 9.41 -15.08 -0.14 -6.31 15 11 H 0.13 2.92 7.55 -52.48 -0.40 2.52 15 12 C 0.03 0.70 4.83 -17.46 -0.08 0.61 15 13 N -0.84 -18.00 9.55 55.49 0.53 -17.47 15 14 Si 0.95 16.42 29.61 -169.99 -5.03 11.38 15 15 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 16 H -0.28 -4.82 7.11 56.52 0.40 -4.42 15 17 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 18 C 0.22 3.97 4.99 -6.83 -0.03 3.93 15 19 C 0.24 4.84 13.58 -20.82 -0.28 4.56 15 20 N -0.44 -9.88 18.53 42.09 0.78 -9.10 15 21 S 0.05 1.01 21.60 -107.50 -2.32 -1.31 15 22 H 0.09 0.91 8.14 -51.93 -0.42 0.48 15 23 H 0.05 0.70 8.13 -51.93 -0.42 0.28 15 24 H 0.05 0.68 8.13 -51.93 -0.42 0.26 15 25 H 0.17 3.07 8.06 -52.48 -0.42 2.65 15 26 H 0.29 5.94 8.31 -40.82 -0.34 5.60 15 27 H 0.10 1.44 7.25 -51.92 -0.38 1.06 15 28 H 0.14 2.38 6.53 -51.93 -0.34 2.04 15 LS Contribution 278.57 15.07 4.20 4.20 Total: -1.00 -27.57 278.57 -5.33 -32.90 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -1.94 Total: 2.10 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -0.34 Total: 16.18 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.85 Total: -46.90 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.75 Total: -18.55 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.03 Total: 11.38 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.32 Total: -1.31 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.57 -5.33 -32.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087663792.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.262 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds