Wall clock time and date at job start Mon Mar 30 2020 04:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34942 * 117.00204 * 2 1 4 4 O 1.21669 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.46118 * 120.00033 * 179.97438 * 3 2 1 6 6 C 1.36998 * 126.12476 * 180.02562 * 5 3 2 7 7 N 1.30661 * 114.00803 * 180.02562 * 6 5 3 8 8 C 1.30345 * 117.30363 * 0.02562 * 7 6 5 9 9 N 1.37659 * 124.74005 * 180.02562 * 8 7 6 10 10 C 1.36853 * 120.00153 * 0.02562 * 9 8 7 11 11 H 1.08004 * 119.99744 * 341.83186 * 10 9 8 12 12 C 1.38857 * 120.00045 * 161.83340 * 10 9 8 13 13 N 1.31509 * 119.99823 * 337.76366 * 12 10 9 14 14 Si 1.86797 * 119.99970 * 157.76288 * 12 10 9 15 15 H 1.48499 * 109.47423 * 59.99965 * 14 12 10 16 16 H 1.48493 * 109.47158 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.47075 * 299.99894 * 14 12 10 18 18 C 1.46500 * 119.99757 * 180.29768 * 9 8 7 19 19 C 1.47199 * 109.47325 * 275.63372 * 18 9 8 20 20 N 6.83479 * 153.99003 * 125.75549 * 2 1 3 21 21 S 1.70921 * 110.51898 * 0.26044 * 8 7 6 22 22 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46960 * 299.99441 * 1 2 3 24 24 H 1.09004 * 109.47318 * 59.99542 * 1 2 3 25 25 H 1.08004 * 122.99844 * 0.07933 * 6 5 3 26 26 H 0.96997 * 120.00024 * 180.02562 * 13 12 10 27 27 H 1.09009 * 109.47545 * 35.63153 * 18 9 8 28 28 H 1.09001 * 109.47302 * 155.62855 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2023 0.0000 4 8 1.3791 2.2227 0.0005 5 6 3.5009 1.2787 0.0006 6 6 4.2495 2.4261 0.0011 7 7 5.5397 2.2190 0.0010 8 6 5.9464 0.9806 -0.0001 9 7 7.2660 0.5884 0.0001 10 6 8.2596 1.5295 0.0022 11 1 8.0407 2.5465 -0.2881 12 6 9.5491 1.1767 0.3774 13 7 9.7485 0.1150 1.1273 14 14 11.0006 2.2104 -0.1831 15 1 10.8461 3.5973 0.3244 16 1 12.2585 1.6260 0.3472 17 1 11.0513 2.2291 -1.6672 18 6 7.6065 -0.8364 -0.0078 19 6 7.5854 -1.3537 1.3701 20 7 7.5716 -1.7514 2.4323 21 16 4.6126 -0.0881 -0.0085 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 3.8124 3.4137 0.0025 26 1 10.6493 -0.1312 1.3897 27 1 6.8798 -1.3805 -0.6113 28 1 8.6023 -0.9697 -0.4307 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087663792.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:20 Heat of formation + Delta-G solvation = -11.709073 kcal Electronic energy + Delta-G solvation = -17279.756354 eV Core-core repulsion = 14230.091270 eV Total energy + Delta-G solvation = -3049.665085 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.22690 -40.45414 -38.76212 -37.29038 -36.74019 -34.32751 -31.16522 -29.72793 -28.46835 -27.34003 -24.72157 -23.18471 -21.23483 -20.14149 -19.37152 -18.47914 -18.12901 -17.33236 -17.28389 -16.91365 -16.27946 -15.78017 -15.43134 -15.11110 -14.88733 -14.30345 -14.24297 -13.97521 -13.66515 -13.42524 -13.04593 -12.89869 -12.67690 -12.49684 -12.17658 -12.05338 -11.80799 -11.64827 -11.56610 -10.75446 -10.27624 -10.03114 -8.99800 -8.72943 -6.02262 -0.36835 0.48129 1.10604 1.37618 1.47500 1.55954 1.59813 1.69574 2.03722 2.05716 2.23173 2.39239 2.66746 2.78092 3.26340 3.94526 4.22226 4.34032 4.39381 4.39903 4.49171 4.67963 4.78976 5.14189 5.24561 5.45581 5.48376 6.16701 6.68813 6.78271 6.88698 6.93912 7.34093 8.22868 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.005595 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.822160 B = 5002.834019 C = 5693.069286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.557 3.443 4 O -0.560 6.560 5 C -0.432 4.432 6 C 0.217 3.783 7 N -0.597 5.597 8 C 0.241 3.759 9 N -0.350 5.350 10 C -0.306 4.306 11 H 0.115 0.885 12 C 0.014 3.986 13 N -0.858 5.858 14 Si 1.006 2.994 15 H -0.274 1.274 16 H -0.275 1.275 17 H -0.253 1.253 18 C 0.220 3.780 19 C 0.249 3.751 20 N -0.479 5.479 21 S 0.092 5.908 22 H 0.132 0.868 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.184 0.816 26 H 0.292 0.708 27 H 0.134 0.866 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -3.313 -6.116 8.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.406 3.594 4 O -0.455 6.455 5 C -0.558 4.558 6 C 0.048 3.952 7 N -0.323 5.323 8 C -0.123 4.123 9 N -0.040 5.040 10 C -0.439 4.439 11 H 0.132 0.868 12 C -0.196 4.196 13 N -0.490 5.490 14 Si 0.828 3.172 15 H -0.200 1.200 16 H -0.200 1.200 17 H -0.177 1.177 18 C 0.094 3.906 19 C -0.070 4.070 20 N -0.159 5.159 21 S 0.339 5.661 22 H 0.150 0.850 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.201 0.799 26 H 0.103 0.897 27 H 0.151 0.849 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.529 -4.690 -4.449 7.365 hybrid contribution 0.111 1.691 -0.175 1.703 sum -3.418 -2.999 -4.624 6.485 Atomic orbital electron populations 1.23129 0.75599 1.05414 1.02196 1.86186 1.24697 1.32282 1.84919 1.19351 0.86827 0.81216 0.71960 1.90776 1.66626 1.36494 1.51559 1.23470 0.93439 0.96363 1.42565 1.22121 0.86044 0.98649 0.88392 1.66080 1.15417 1.19178 1.31642 1.23869 0.90948 0.92939 1.04538 1.42528 1.00255 1.05836 1.55334 1.20364 0.86484 0.94317 1.42721 0.86758 1.26341 1.01413 0.98513 0.93338 1.69963 1.25635 1.26510 1.26919 0.84754 0.75142 0.77628 0.79683 1.19957 1.20023 1.17683 1.19325 1.06875 0.78521 0.85892 1.29120 0.90320 0.92160 0.95360 1.80866 1.12021 1.10668 1.12321 1.83013 0.94993 1.08737 1.79375 0.85012 0.92580 0.92209 0.79915 0.89717 0.84902 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.45 113.37 1.18 1.90 15 2 O -0.36 -12.07 10.36 -58.58 -0.61 -12.68 15 3 C 0.56 21.42 7.90 69.87 0.55 21.97 15 4 O -0.56 -23.06 16.64 19.28 0.32 -22.74 15 5 C -0.43 -17.25 6.51 24.02 0.16 -17.09 15 6 C 0.22 8.81 11.15 84.58 0.94 9.76 15 7 N -0.60 -26.43 9.77 -200.62 -1.96 -28.40 15 8 C 0.24 10.20 7.61 179.45 1.37 11.57 15 9 N -0.35 -14.48 2.66 -534.71 -1.42 -15.91 15 10 C -0.31 -13.32 9.41 84.06 0.79 -12.53 15 11 H 0.11 5.23 7.55 -2.91 -0.02 5.21 15 12 C 0.01 0.55 4.83 84.89 0.41 0.96 15 13 N -0.86 -36.23 9.55 21.65 0.21 -36.02 15 14 Si 1.01 32.91 29.61 68.60 2.03 34.94 15 15 H -0.27 -9.40 7.11 99.48 0.71 -8.69 15 16 H -0.28 -8.83 7.11 99.48 0.71 -8.13 15 17 H -0.25 -7.83 7.11 99.48 0.71 -7.12 15 18 C 0.22 7.59 4.99 84.57 0.42 8.02 15 19 C 0.25 10.01 13.58 89.46 1.21 11.22 15 20 N -0.48 -21.26 18.53 19.98 0.37 -20.89 15 21 S 0.09 3.45 21.60 -56.49 -1.22 2.23 15 22 H 0.13 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.06 1.31 8.13 -2.39 -0.02 1.29 15 24 H 0.06 1.36 8.13 -2.38 -0.02 1.34 15 25 H 0.18 6.62 8.06 -2.91 -0.02 6.60 15 26 H 0.29 11.73 8.31 -92.71 -0.77 10.96 15 27 H 0.13 3.59 7.25 -2.38 -0.02 3.58 15 28 H 0.15 4.91 6.53 -2.39 -0.02 4.89 15 Total: -1.00 -57.68 278.57 5.97 -51.71 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.21 Total: 11.98 kcal Atomic # 6 Polarization: 28.73 SS G_CDS: 7.04 Total: 35.77 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -2.81 Total: -101.21 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.29 Total: -35.42 kcal Atomic # 14 Polarization: 32.91 SS G_CDS: 2.03 Total: 34.94 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.22 Total: 2.23 kcal Total: -57.68 5.97 -51.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087663792.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.999 kcal (2) G-P(sol) polarization free energy of solvation -57.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds