Wall clock time and date at job start Mon Mar 30 2020 04:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37952 * 120.00149 * 2 1 4 4 N 1.30753 * 125.56942 * 359.97438 * 3 2 1 5 5 N 1.26260 * 117.54940 * 179.77208 * 4 3 2 6 6 C 1.30799 * 116.32801 * 0.46409 * 5 4 3 7 7 C 1.46709 * 126.11516 * 179.84233 * 6 5 4 8 8 O 1.21729 * 119.99994 * 174.43031 * 7 6 5 9 9 N 1.34775 * 119.99914 * 354.42815 * 7 6 5 10 10 C 1.36825 * 120.00076 * 173.43038 * 9 7 6 11 11 H 1.08008 * 120.00128 * 14.05346 * 10 9 7 12 12 C 1.39038 * 120.00402 * 193.78336 * 10 9 7 13 13 N 1.31383 * 119.99796 * 27.54337 * 12 10 9 14 14 Si 1.86798 * 120.00255 * 207.54799 * 12 10 9 15 15 H 1.48496 * 109.47204 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47040 * 119.99701 * 14 12 10 17 17 H 1.48494 * 109.47342 * 239.99457 * 14 12 10 18 18 C 1.46501 * 120.00160 * 353.42655 * 9 7 6 19 19 C 1.47201 * 109.46992 * 88.00970 * 18 9 7 20 20 N 6.42943 * 93.31647 * 17.14569 * 2 1 3 21 21 S 1.71270 * 125.57210 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.47538 * 59.99681 * 1 2 3 23 23 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47149 * 299.99658 * 1 2 3 25 25 H 0.97001 * 119.99896 * 180.02562 * 2 1 3 26 26 H 0.96995 * 120.00082 * 180.02562 * 13 12 10 27 27 H 1.08996 * 109.46953 * 208.00883 * 18 9 7 28 28 H 1.09002 * 109.46957 * 328.00895 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1548 1.1947 0.0000 4 7 1.6141 2.3852 -0.0005 5 7 2.3918 3.3798 0.0041 6 6 3.6726 3.1147 -0.0007 7 6 4.7596 4.1001 -0.0002 8 8 5.9155 3.7311 0.0974 9 7 4.4783 5.4137 -0.1078 10 6 5.4759 6.3403 0.0272 11 1 6.5098 6.0297 -0.0075 12 6 5.1590 7.6825 0.2036 13 7 4.0213 8.0203 0.7674 14 14 6.3506 9.0057 -0.3609 15 1 7.5509 8.3682 -0.9594 16 1 5.6899 9.8672 -1.3742 17 1 6.7585 9.8336 0.8024 18 6 3.1043 5.8497 -0.3695 19 6 2.3889 6.0099 0.9069 20 7 1.8370 6.1334 1.8922 21 16 3.8594 1.3609 -0.0006 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.9500 -0.8401 -0.0004 26 1 3.8000 8.9566 0.8901 27 1 3.1200 6.8021 -0.8993 28 1 2.5962 5.1028 -0.9796 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087696740.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:36 Heat of formation + Delta-G solvation = 90.646087 kcal Electronic energy + Delta-G solvation = -17705.799781 eV Core-core repulsion = 14692.865900 eV Total energy + Delta-G solvation = -3012.933881 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.053 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59138 -38.63843 -36.23262 -35.68246 -34.21147 -32.17885 -30.21586 -27.64146 -27.34854 -25.63419 -24.49156 -21.49652 -19.64333 -18.89750 -18.01421 -17.37127 -16.37144 -15.94695 -15.44926 -15.14443 -14.42498 -14.25022 -13.90785 -13.45622 -13.17465 -13.03151 -12.53188 -12.41359 -12.08565 -11.51825 -11.26182 -11.22037 -10.84952 -10.53133 -10.46912 -10.41057 -10.13156 -9.71827 -9.41512 -9.23625 -8.86710 -8.24669 -7.97260 -6.75994 -4.07085 0.75098 0.98829 1.71951 2.77366 3.06822 3.12687 3.16305 3.22913 3.73570 3.93396 4.07218 4.32681 4.61983 4.76075 4.96845 5.11010 5.22189 5.38189 5.48414 5.65022 5.80457 6.34644 6.48729 6.66499 7.09277 7.25078 7.67404 8.08608 8.77649 8.94237 9.03803 9.05714 9.56437 10.26861 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.034126 B = 0.006040 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.300179 B = 4634.893637 C = 5275.553477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.690 5.690 3 C 0.236 3.764 4 N -0.339 5.339 5 N -0.209 5.209 6 C -0.033 4.033 7 C 0.503 3.497 8 O -0.576 6.576 9 N -0.393 5.393 10 C -0.305 4.305 11 H 0.121 0.879 12 C 0.037 3.963 13 N -0.837 5.837 14 Si 0.931 3.069 15 H -0.261 1.261 16 H -0.274 1.274 17 H -0.279 1.279 18 C 0.216 3.784 19 C 0.266 3.734 20 N -0.476 5.476 21 S 0.142 5.858 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.415 0.585 26 H 0.281 0.719 27 H 0.117 0.883 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -11.537 -5.591 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.331 5.331 3 C -0.135 4.135 4 N -0.188 5.188 5 N -0.051 5.051 6 C -0.314 4.314 7 C 0.290 3.710 8 O -0.460 6.460 9 N -0.110 5.110 10 C -0.434 4.434 11 H 0.139 0.861 12 C -0.172 4.172 13 N -0.473 5.473 14 Si 0.756 3.244 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.205 1.205 18 C 0.089 3.911 19 C -0.052 4.052 20 N -0.156 5.156 21 S 0.382 5.618 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.251 0.749 26 H 0.092 0.908 27 H 0.135 0.865 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.274 -11.186 -4.033 13.008 hybrid contribution 0.596 0.382 -0.373 0.800 sum -4.678 -10.804 -4.406 12.571 Atomic orbital electron populations 1.21606 0.77966 1.02087 1.02733 1.43247 1.06531 1.02471 1.80823 1.25981 0.94360 0.92532 1.00636 1.71560 1.29246 0.93005 1.25030 1.71986 0.99015 1.21604 1.12526 1.29386 0.96122 0.94740 1.11168 1.16121 0.85927 0.81487 0.87490 1.90710 1.19021 1.78574 1.57706 1.43596 1.06976 1.03957 1.56476 1.20003 0.89591 0.85795 1.48037 0.86122 1.25502 0.97837 0.98897 0.94991 1.69978 1.24212 1.19841 1.33242 0.85796 0.80309 0.79514 0.78817 1.18523 1.19966 1.20511 1.19003 0.80721 1.02735 0.88606 1.28593 0.91977 0.90025 0.94622 1.80819 1.11687 1.12091 1.10997 1.84622 0.99845 1.05586 1.71763 0.92031 0.90508 0.92096 0.74869 0.90825 0.86501 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 11.00 59.85 0.66 1.56 15 2 N -0.69 -7.36 5.84 -68.96 -0.40 -7.77 15 3 C 0.24 3.64 8.20 -87.44 -0.72 2.92 15 4 N -0.34 -6.39 11.22 29.88 0.34 -6.06 15 5 N -0.21 -4.38 7.31 32.80 0.24 -4.14 15 6 C -0.03 -0.69 7.17 -14.57 -0.10 -0.80 15 7 C 0.50 12.25 7.57 -12.84 -0.10 12.15 15 8 O -0.58 -15.25 16.59 5.16 0.09 -15.16 15 9 N -0.39 -9.61 2.58 -119.42 -0.31 -9.92 15 10 C -0.30 -7.72 9.35 -15.03 -0.14 -7.86 15 11 H 0.12 3.16 7.35 -52.48 -0.39 2.77 15 12 C 0.04 0.88 4.74 -17.45 -0.08 0.80 15 13 N -0.84 -20.74 9.55 55.50 0.53 -20.21 15 14 Si 0.93 18.55 29.63 -169.99 -5.04 13.51 15 15 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 16 H -0.27 -5.31 7.11 56.52 0.40 -4.90 15 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 18 C 0.22 4.78 4.75 -6.83 -0.03 4.75 15 19 C 0.27 6.51 12.02 -20.76 -0.25 6.26 15 20 N -0.48 -12.42 18.54 42.16 0.78 -11.64 15 21 S 0.14 2.33 23.14 -107.50 -2.49 -0.16 15 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 15 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 15 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.42 3.09 8.95 -40.82 -0.37 2.72 15 26 H 0.28 6.58 8.31 -40.82 -0.34 6.24 15 27 H 0.12 2.48 6.62 -51.93 -0.34 2.14 15 28 H 0.11 2.13 5.75 -51.93 -0.30 1.83 15 LS Contribution 271.93 15.07 4.10 4.10 Total: -1.00 -31.88 271.93 -4.73 -36.61 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -1.80 Total: 1.06 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: -0.77 Total: 19.77 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 1.18 Total: -59.73 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.09 Total: -15.16 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.04 Total: 13.51 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.49 Total: -0.16 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.88 -4.73 -36.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087696740.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.253 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds