Wall clock time and date at job start Mon Mar 30 2020 05:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38459 * 120.00038 * 2 1 4 4 N 1.32506 * 119.15513 * 359.97438 * 3 2 1 5 5 C 1.32490 * 120.95052 * 180.02562 * 4 3 2 6 6 C 1.38270 * 119.27541 * 359.97438 * 5 4 3 7 7 Cl 1.73605 * 120.77092 * 179.97438 * 6 5 4 8 8 C 1.39763 * 118.45701 * 0.02562 * 6 5 4 9 9 N 1.38535 * 120.49835 * 179.97438 * 8 6 5 10 10 C 1.36929 * 120.00154 * 93.54931 * 9 8 6 11 11 H 1.07997 * 120.00408 * 341.49002 * 10 9 8 12 12 C 1.38845 * 120.00053 * 161.48446 * 10 9 8 13 13 N 1.31541 * 120.00294 * 331.63251 * 12 10 9 14 14 Si 1.86800 * 119.99957 * 151.90126 * 12 10 9 15 15 H 1.48505 * 109.46816 * 60.00524 * 14 12 10 16 16 H 1.48496 * 109.47229 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47289 * 300.00652 * 14 12 10 18 18 C 1.46502 * 119.99772 * 273.54706 * 9 8 6 19 19 C 1.47196 * 109.47216 * 271.25049 * 18 9 8 20 20 N 5.62318 * 156.99364 * 268.55832 * 2 1 3 21 21 N 1.32389 * 119.16043 * 180.25216 * 3 2 1 22 22 H 1.09004 * 109.47429 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47675 * 300.00420 * 1 2 3 24 24 H 1.08999 * 109.47502 * 60.00180 * 1 2 3 25 25 H 0.96998 * 120.00380 * 179.97438 * 2 1 3 26 26 H 1.08002 * 120.36255 * 179.97438 * 5 4 3 27 27 H 0.96993 * 120.00453 * 179.97438 * 13 12 10 28 28 H 1.08998 * 109.46948 * 31.25534 * 18 9 8 29 29 H 1.09005 * 109.46840 * 151.24958 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1572 1.1991 0.0000 4 7 1.4779 2.3367 -0.0005 5 6 2.1041 3.5043 -0.0010 6 6 3.4865 3.5302 -0.0005 7 17 4.3467 5.0381 -0.0018 8 6 4.1753 2.3140 0.0000 9 7 5.5605 2.2906 0.0000 10 6 6.2438 2.2061 1.1836 11 1 5.7499 2.4548 2.1113 12 6 7.5717 1.8005 1.1912 13 7 8.0190 0.9958 0.2517 14 14 8.7211 2.3916 2.5398 15 1 8.2037 1.9501 3.8599 16 1 10.0746 1.8207 2.3221 17 1 8.7989 3.8742 2.5093 18 6 6.2942 2.3561 -1.2663 19 6 6.4902 0.9948 -1.7908 20 7 6.6409 -0.0553 -2.1970 21 7 3.4810 1.1797 -0.0051 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.9500 -0.8400 0.0004 26 1 1.5408 4.4259 -0.0019 27 1 8.9467 0.7127 0.2568 28 1 5.7249 2.9443 -1.9860 29 1 7.2642 2.8248 -1.1004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087800965.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:49 Heat of formation + Delta-G solvation = 96.784573 kcal Electronic energy + Delta-G solvation = -17834.693178 eV Core-core repulsion = 14819.981775 eV Total energy + Delta-G solvation = -3014.711402 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.058 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.81345 -38.62382 -37.34133 -36.55302 -36.09020 -34.43948 -33.09561 -31.06074 -28.95916 -27.28612 -26.39378 -24.43369 -22.83209 -19.62871 -19.48526 -18.69216 -17.76473 -17.17183 -16.76186 -16.34383 -15.92883 -15.59512 -15.51694 -14.87554 -14.32828 -14.25689 -13.79876 -13.32078 -13.04868 -12.97978 -12.87711 -12.69066 -12.31038 -12.27902 -12.09584 -11.91901 -11.87911 -11.53219 -10.89428 -10.74745 -10.05105 -9.41599 -8.88073 -8.07609 -5.52569 0.12990 0.24819 1.37876 1.52144 1.56225 1.63012 1.97059 2.21489 2.45322 2.55794 2.92634 3.07310 3.12860 3.54461 3.73688 3.93237 4.10105 4.42799 4.61182 4.68007 4.73691 4.95515 4.98077 5.08690 5.59642 5.85106 6.11729 6.15839 6.49413 6.82000 7.29074 7.41211 7.59201 7.89972 8.96492 Molecular weight = 267.06amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.007803 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.218708 B = 3587.348392 C = 4150.258935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.706 5.706 3 C 0.552 3.448 4 N -0.570 5.570 5 C 0.208 3.792 6 C -0.205 4.205 7 Cl -0.032 7.032 8 C 0.466 3.534 9 N -0.525 5.525 10 C -0.274 4.274 11 H 0.075 0.925 12 C -0.017 4.017 13 N -0.907 5.907 14 Si 0.972 3.028 15 H -0.284 1.284 16 H -0.297 1.297 17 H -0.262 1.262 18 C 0.269 3.731 19 C 0.255 3.745 20 N -0.529 5.529 21 N -0.608 5.608 22 H 0.102 0.898 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.414 0.586 26 H 0.211 0.789 27 H 0.258 0.742 28 H 0.104 0.896 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.604 7.636 -0.587 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.343 5.343 3 C 0.194 3.806 4 N -0.295 5.295 5 C 0.041 3.959 6 C -0.243 4.243 7 Cl -0.004 7.004 8 C 0.228 3.772 9 N -0.243 5.243 10 C -0.402 4.402 11 H 0.093 0.907 12 C -0.216 4.216 13 N -0.549 5.549 14 Si 0.799 3.201 15 H -0.210 1.210 16 H -0.224 1.224 17 H -0.187 1.187 18 C 0.140 3.860 19 C -0.063 4.063 20 N -0.211 5.211 21 N -0.336 5.336 22 H 0.121 0.879 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.250 0.750 26 H 0.228 0.772 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.843 5.270 -1.198 13.934 hybrid contribution 1.674 0.382 0.953 1.964 sum -11.169 5.653 -0.245 12.520 Atomic orbital electron populations 1.21634 0.76120 1.03691 1.01948 1.44172 1.07640 1.03323 1.79209 1.19722 0.84658 0.87869 0.88364 1.68066 1.39671 0.97337 1.24388 1.23356 0.88917 0.96587 0.87070 1.22842 0.94751 0.89194 1.17534 1.98321 1.77243 1.27595 1.97226 1.18665 0.87315 0.86319 0.84936 1.41775 0.96948 1.81874 1.03688 1.19151 0.93213 1.41858 0.85984 0.90696 1.25588 0.99810 0.95921 1.00291 1.70050 1.16021 1.30949 1.37841 0.85303 0.77170 0.79190 0.78482 1.21014 1.22382 1.18720 1.18411 0.98924 0.83914 0.84706 1.30522 0.89891 0.96507 0.89389 1.80742 1.12250 1.13289 1.14805 1.68343 1.07763 1.34146 1.23324 0.87899 0.92545 0.92459 0.74989 0.77232 0.93247 0.87847 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.13 10.68 127.77 1.36 3.50 15 2 N -0.71 -20.25 5.86 -372.62 -2.18 -22.44 15 3 C 0.55 19.71 8.43 261.50 2.20 21.91 15 4 N -0.57 -17.81 9.58 -198.13 -1.90 -19.71 15 5 C 0.21 5.81 11.10 84.60 0.94 6.75 15 6 C -0.20 -6.82 6.39 22.65 0.14 -6.68 15 7 Cl -0.03 -0.95 28.57 -2.72 -0.08 -1.02 15 8 C 0.47 19.37 6.09 133.20 0.81 20.18 15 9 N -0.53 -23.73 2.08 -527.07 -1.09 -24.82 15 10 C -0.27 -13.61 9.56 84.04 0.80 -12.81 15 11 H 0.08 3.79 7.97 -2.91 -0.02 3.77 15 12 C -0.02 -0.85 4.68 84.88 0.40 -0.45 15 13 N -0.91 -49.11 9.72 21.65 0.21 -48.90 15 14 Si 0.97 41.31 29.64 68.60 2.03 43.34 15 15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 16 H -0.30 -12.96 7.11 99.48 0.71 -12.26 15 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 18 C 0.27 11.36 5.45 84.57 0.46 11.82 15 19 C 0.26 12.54 13.12 89.44 1.17 13.72 15 20 N -0.53 -28.24 18.54 20.00 0.37 -27.87 15 21 N -0.61 -26.17 10.49 -195.40 -2.05 -28.22 15 22 H 0.10 1.33 8.14 -2.38 -0.02 1.31 15 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 15 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 15 25 H 0.41 11.66 8.94 -92.71 -0.83 10.83 15 26 H 0.21 3.90 8.06 -2.91 -0.02 3.88 15 27 H 0.26 13.91 8.31 -92.71 -0.77 13.14 15 28 H 0.10 3.57 8.05 -2.39 -0.02 3.55 15 29 H 0.11 4.65 7.02 -2.38 -0.02 4.64 15 Total: -1.00 -65.90 284.06 3.99 -61.92 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.38 Total: 9.80 kcal Atomic # 6 Polarization: 49.64 SS G_CDS: 8.30 Total: 57.94 kcal Atomic # 7 Polarization: -165.32 SS G_CDS: -6.64 Total: -171.97 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.02 kcal Total: -65.90 3.99 -61.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087800965.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.702 kcal (2) G-P(sol) polarization free energy of solvation -65.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds