Wall clock time and date at job start Mon Mar 30 2020 04:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00485 * 2 1 4 4 H 1.48501 * 109.47002 * 239.99769 * 3 2 1 5 5 H 1.48498 * 109.46975 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47397 * 119.99663 * 3 2 1 7 7 C 1.37877 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00355 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99904 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40076 * 66.45131 * 9 7 2 11 11 O 1.42104 * 106.39978 * 293.53530 * 9 7 2 12 12 N 1.65594 * 107.21721 * 179.97438 * 9 7 2 13 13 C 1.46501 * 120.00134 * 65.00114 * 12 9 7 14 14 C 1.53001 * 109.47138 * 165.00108 * 13 12 9 15 15 H 1.09002 * 112.83197 * 45.33025 * 14 13 12 16 16 C 1.53519 * 113.58744 * 176.44471 * 14 13 12 17 17 C 1.51606 * 87.24703 * 114.66659 * 16 14 13 18 18 C 1.38374 * 147.52755 * 179.97438 * 17 16 14 19 19 C 1.38091 * 120.32812 * 180.02562 * 18 17 16 20 20 C 1.38245 * 119.95708 * 0.03036 * 19 18 17 21 21 C 1.38094 * 119.95311 * 359.97438 * 20 19 18 22 22 C 1.38379 * 120.32840 * 359.97438 * 21 20 19 23 23 H 0.97002 * 119.99636 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99724 * 244.99684 * 12 9 7 25 25 H 1.08997 * 109.47399 * 44.99456 * 13 12 9 26 26 H 1.09001 * 109.46659 * 284.99729 * 13 12 9 27 27 H 1.09003 * 113.58701 * 229.26314 * 16 14 13 28 28 H 1.09001 * 113.59016 * 0.07534 * 16 14 13 29 29 H 1.07999 * 119.83381 * 0.03364 * 18 17 16 30 30 H 1.08003 * 120.02114 * 180.02562 * 19 18 17 31 31 H 1.07995 * 120.02205 * 180.02562 * 20 19 18 32 32 H 1.08003 * 119.83772 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 16 1.1233 -2.7200 0.0005 10 8 0.4515 -2.7954 -1.2494 11 8 0.4508 -2.7950 1.2501 12 7 2.2480 -3.9355 0.0005 13 6 3.1391 -4.1090 1.1504 14 6 3.8044 -5.4848 1.0770 15 1 4.1804 -5.7202 0.0814 16 6 4.8273 -5.7329 2.1945 17 6 3.9002 -6.8199 2.7018 18 6 3.6603 -7.8030 3.6456 19 6 2.5068 -8.5599 3.5863 20 6 1.5859 -8.3370 2.5797 21 6 1.8204 -7.3572 1.6352 22 6 2.9741 -6.5951 1.6906 23 1 -0.4850 0.8401 -0.0004 24 1 2.3168 -4.5326 -0.7608 25 1 2.5620 -4.0330 2.0720 26 1 3.9052 -3.3337 1.1365 27 1 5.7846 -6.1092 1.8339 28 1 4.9337 -4.8942 2.8826 29 1 4.3787 -7.9790 4.4326 30 1 2.3244 -9.3256 4.3258 31 1 0.6832 -8.9280 2.5326 32 1 1.0998 -7.1849 0.8494 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090993427.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:06 Heat of formation + Delta-G solvation = -63.349502 kcal Electronic energy + Delta-G solvation = -17773.180045 eV Core-core repulsion = 14824.816007 eV Total energy + Delta-G solvation = -2948.364038 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39412 -37.48920 -37.15957 -36.14113 -35.23527 -34.81767 -31.62307 -28.91189 -28.25147 -26.72949 -24.17167 -22.25392 -21.19888 -20.64381 -19.31003 -18.18538 -17.64156 -17.26011 -16.82264 -16.16013 -16.01348 -15.69585 -15.39283 -15.01761 -14.47717 -13.96584 -13.88193 -13.58088 -13.43262 -13.09790 -12.99448 -12.96194 -12.52905 -12.51416 -12.39855 -12.30849 -12.04851 -11.74053 -11.22989 -11.21911 -11.00412 -10.18737 -9.73233 -9.46760 -8.74212 -7.47945 0.34356 0.42943 0.49715 1.36176 1.38570 1.51527 2.22481 2.59573 2.85011 2.96778 3.23479 3.52474 3.67401 3.72772 3.95842 4.21741 4.24587 4.35198 4.51904 4.65788 4.69689 4.75467 4.77310 4.91405 5.02487 5.11696 5.21797 5.27050 5.34792 5.51549 5.60556 5.86150 5.90912 6.13173 6.39908 6.78974 8.22176 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.033044 B = 0.005120 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.145520 B = 5467.016813 C = 5879.036798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.067 3.933 3 Si 0.993 3.007 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.247 1.247 7 C -1.040 5.040 8 H 0.126 0.874 9 S 2.719 3.281 10 O -1.047 7.047 11 O -1.046 7.046 12 N -1.120 6.120 13 C 0.135 3.865 14 C -0.049 4.049 15 H 0.120 0.880 16 C -0.051 4.051 17 C -0.143 4.143 18 C -0.106 4.106 19 C -0.122 4.122 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.153 4.153 23 H 0.298 0.702 24 H 0.415 0.585 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.173 -12.292 5.522 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.811 3.189 4 H -0.173 1.173 5 H -0.191 1.191 6 H -0.171 1.171 7 C -1.173 5.173 8 H 0.144 0.856 9 S 2.820 3.180 10 O -1.037 7.037 11 O -1.036 7.036 12 N -0.879 5.879 13 C 0.009 3.991 14 C -0.069 4.069 15 H 0.138 0.862 16 C -0.088 4.088 17 C -0.143 4.143 18 C -0.124 4.124 19 C -0.140 4.140 20 C -0.148 4.148 21 C -0.138 4.138 22 C -0.153 4.153 23 H 0.109 0.891 24 H 0.249 0.751 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.141 0.859 28 H 0.124 0.876 29 H 0.160 0.840 30 H 0.171 0.829 31 H 0.159 0.841 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.009 -12.267 5.701 17.441 hybrid contribution 0.010 0.725 -0.519 0.892 sum 11.019 -11.542 5.182 16.778 Atomic orbital electron populations 1.70002 1.08928 1.32395 1.41448 1.26081 0.95378 1.05585 0.87504 0.85116 0.78702 0.74215 0.80852 1.17307 1.19069 1.17091 1.30882 1.07388 1.12332 1.66723 0.85644 0.99867 0.72661 0.74088 0.71367 1.93306 1.75022 1.88498 1.46922 1.93303 1.74664 1.88308 1.47337 1.55297 1.55260 1.49615 1.27775 1.21166 0.92978 0.97381 0.87559 1.21787 0.93706 0.89958 1.01416 0.86193 1.21921 0.96964 0.95124 0.94832 1.22647 0.98436 0.97513 0.95687 1.20651 0.98205 0.94890 0.98609 1.21360 0.93712 1.00169 0.98722 1.21287 1.00536 0.97984 0.95018 1.20638 0.96635 0.96424 1.00141 1.22547 0.95519 0.97814 0.99419 0.89149 0.75113 0.92819 0.89335 0.85944 0.87638 0.84032 0.82944 0.84079 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.04 13.19 21.45 0.28 -53.76 16 2 C 0.07 3.74 5.46 84.66 0.46 4.20 16 3 Si 0.99 40.88 29.54 68.60 2.03 42.90 16 4 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 7 C -1.04 -56.83 9.72 67.73 0.66 -56.18 16 8 H 0.13 6.01 7.81 -2.91 -0.02 5.99 16 9 S 2.72 148.01 5.02 -56.49 -0.28 147.73 16 10 O -1.05 -63.72 18.02 -128.00 -2.31 -66.03 16 11 O -1.05 -64.06 17.49 -128.00 -2.24 -66.30 16 12 N -1.12 -44.19 6.00 -187.49 -1.12 -45.31 16 13 C 0.14 4.46 5.97 86.38 0.52 4.97 16 14 C -0.05 -1.24 3.96 -11.09 -0.04 -1.28 16 15 H 0.12 2.53 8.14 -2.39 -0.02 2.52 16 16 C -0.05 -0.98 7.86 30.30 0.24 -0.74 16 17 C -0.14 -3.47 7.49 -19.38 -0.15 -3.61 16 18 C -0.11 -2.27 10.03 22.27 0.22 -2.04 16 19 C -0.12 -2.55 10.04 22.24 0.22 -2.33 16 20 C -0.13 -3.18 10.04 22.24 0.22 -2.96 16 21 C -0.12 -3.56 10.03 22.27 0.22 -3.33 16 22 C -0.15 -4.40 6.93 -19.38 -0.13 -4.54 16 23 H 0.30 16.19 8.31 -92.71 -0.77 15.42 16 24 H 0.41 14.08 8.65 -96.75 -0.84 13.24 16 25 H 0.05 2.03 7.64 -2.39 -0.02 2.01 16 26 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.11 1.84 8.00 -2.39 -0.02 1.82 16 29 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.11 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -79.62 295.17 -0.90 -80.52 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.30 Total: 28.08 kcal Atomic # 6 Polarization: -70.29 SS G_CDS: 2.44 Total: -67.84 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -0.84 Total: -99.07 kcal Atomic # 8 Polarization: -127.78 SS G_CDS: -4.55 Total: -132.32 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 148.01 SS G_CDS: -0.28 Total: 147.73 kcal Total: -79.62 -0.90 -80.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090993427.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.171 kcal (2) G-P(sol) polarization free energy of solvation -79.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds