Wall clock time and date at job start Mon Mar 30 2020 04:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00344 * 2 1 4 4 H 1.48494 * 109.47212 * 269.99738 * 3 2 1 5 5 H 1.48498 * 109.47040 * 30.00044 * 3 2 1 6 6 H 1.48501 * 109.47000 * 150.00154 * 3 2 1 7 7 C 1.37881 * 119.99301 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99981 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99622 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.39973 * 66.45820 * 9 7 2 11 11 O 1.42100 * 106.39873 * 293.53987 * 9 7 2 12 12 N 1.65597 * 107.21488 * 179.97438 * 9 7 2 13 13 C 1.46501 * 119.99963 * 65.00316 * 12 9 7 14 14 C 1.53000 * 109.47407 * 164.99768 * 13 12 9 15 15 H 1.09006 * 112.82934 * 313.38026 * 14 13 12 16 16 C 1.52256 * 113.59626 * 182.15460 * 14 13 12 17 17 C 1.50555 * 87.23657 * 245.41420 * 16 14 13 18 18 C 1.38809 * 147.30887 * 179.67986 * 17 16 14 19 19 C 1.38071 * 120.09431 * 179.97438 * 18 17 16 20 20 C 1.38235 * 119.97684 * 0.43235 * 19 18 17 21 21 C 1.38061 * 119.98048 * 359.78368 * 20 19 18 22 22 C 1.37725 * 92.76440 * 359.97438 * 17 16 14 23 23 H 0.97008 * 119.99433 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00415 * 244.99505 * 12 9 7 25 25 H 1.09000 * 109.47494 * 44.99676 * 13 12 9 26 26 H 1.09006 * 109.47127 * 284.99653 * 13 12 9 27 27 H 1.08999 * 113.59221 * 130.82223 * 16 14 13 28 28 H 1.09006 * 113.58304 * 0.02562 * 16 14 13 29 29 H 1.08003 * 119.95490 * 0.33800 * 18 17 16 30 30 H 1.08000 * 120.00916 * 180.22079 * 19 18 17 31 31 H 1.08002 * 120.00501 * 179.76769 * 20 19 18 32 32 H 1.08001 * 119.95442 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 1.4643 -2.1294 0.0005 9 16 3.7665 -1.1943 0.0012 10 8 4.1672 -0.6495 1.2510 11 8 4.1682 -0.6501 -1.2485 12 7 4.2565 -2.7761 0.0025 13 6 3.9616 -3.6352 -1.1470 14 6 4.8202 -4.8993 -1.0725 15 1 5.8660 -4.6877 -0.8496 16 6 4.6255 -5.8388 -2.2548 17 6 4.0508 -6.8305 -1.2786 18 6 3.4912 -8.0853 -1.0811 19 6 3.1186 -8.4855 0.1868 20 6 3.2947 -7.6322 1.2600 21 6 3.8471 -6.3822 1.0641 22 6 4.2274 -5.9809 -0.2091 23 1 -0.4850 0.8402 -0.0004 24 1 4.7389 -3.1338 0.7641 25 1 4.1848 -3.0981 -2.0688 26 1 2.9071 -3.9109 -1.1334 27 1 5.5600 -6.1665 -2.7102 28 1 3.9024 -5.4762 -2.9855 29 1 3.3524 -8.7519 -1.9194 30 1 2.6867 -9.4635 0.3394 31 1 3.0000 -7.9433 2.2514 32 1 3.9841 -5.7157 1.9029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090993428.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:09 Heat of formation + Delta-G solvation = -20.917120 kcal Electronic energy + Delta-G solvation = -17824.277773 eV Core-core repulsion = 14877.753741 eV Total energy + Delta-G solvation = -2946.524032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68692 -36.29180 -35.57930 -34.41528 -33.69836 -33.00085 -30.67778 -27.89418 -26.39952 -25.68824 -23.17789 -21.32045 -19.89285 -18.96576 -17.47241 -16.71726 -16.60632 -16.11030 -15.32180 -14.90048 -14.58653 -14.18058 -13.88087 -13.41555 -13.28497 -13.00435 -12.85973 -12.42715 -12.22367 -12.06150 -11.55242 -11.39941 -11.25593 -10.76760 -10.74699 -10.60769 -10.48262 -10.30416 -9.80477 -9.22196 -9.19488 -8.77929 -8.58818 -8.55813 -6.78656 -5.32321 1.35181 1.40561 2.09787 3.08592 3.19101 3.28309 3.77550 3.96752 4.17598 4.27907 4.44305 4.61202 4.72802 4.98698 5.03440 5.12905 5.33366 5.38391 5.56994 5.63367 5.67500 5.85270 5.90062 5.93282 6.11421 6.22993 6.28540 6.39782 6.51621 6.59884 6.80662 7.01816 7.49336 7.74592 8.23186 8.72474 10.33767 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.031272 B = 0.005327 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.153096 B = 5255.265958 C = 5494.161313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.152 3.848 3 Si 0.803 3.197 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.015 5.015 8 H 0.121 0.879 9 S 2.677 3.323 10 O -1.009 7.009 11 O -1.012 7.012 12 N -1.124 6.124 13 C 0.141 3.859 14 C -0.053 4.053 15 H 0.103 0.897 16 C -0.068 4.068 17 C -0.131 4.131 18 C -0.098 4.098 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.090 4.090 22 C -0.118 4.118 23 H 0.280 0.720 24 H 0.405 0.595 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -14.315 -1.818 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.623 3.377 4 H -0.170 1.170 5 H -0.180 1.180 6 H -0.142 1.142 7 C -1.150 5.150 8 H 0.139 0.861 9 S 2.778 3.222 10 O -0.999 6.999 11 O -1.002 7.002 12 N -0.879 5.879 13 C 0.014 3.986 14 C -0.073 4.073 15 H 0.121 0.879 16 C -0.106 4.106 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.140 4.140 20 C -0.138 4.138 21 C -0.108 4.108 22 C -0.118 4.118 23 H 0.091 0.909 24 H 0.237 0.763 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.440 -13.427 -1.982 15.478 hybrid contribution -0.452 0.130 0.483 0.674 sum 6.987 -13.297 -1.499 15.096 Atomic orbital electron populations 1.70001 1.06611 1.28996 1.39693 1.24442 0.94792 0.98840 0.88621 0.87844 0.83566 0.84491 0.81805 1.17005 1.17954 1.14219 1.30466 1.15702 1.02139 1.66654 0.86133 1.01287 0.77279 0.70363 0.73238 1.93473 1.85527 1.75908 1.45040 1.93401 1.85047 1.76123 1.45624 1.55430 1.74366 1.31342 1.26777 1.20995 0.98672 0.89410 0.89490 1.21361 1.00325 0.92791 0.92778 0.87886 1.21506 1.01144 0.91783 0.96119 1.21864 0.99076 0.94428 0.97769 1.20383 0.99351 0.94898 0.96996 1.20950 1.00825 0.99711 0.92488 1.20979 0.99901 0.93899 0.99028 1.20530 0.98224 0.95987 0.96019 1.21856 0.99129 0.97124 0.93732 0.90943 0.76349 0.89704 0.91438 0.88938 0.88476 0.86618 0.85955 0.85819 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.96 13.96 55.43 0.77 -23.18 16 2 C 0.15 4.40 5.47 -17.82 -0.10 4.31 16 3 Si 0.80 20.68 26.54 -169.99 -4.51 16.17 16 4 H -0.25 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.22 -5.77 5.61 56.52 0.32 -5.45 16 7 C -1.02 -28.39 10.26 30.60 0.31 -28.08 16 8 H 0.12 3.42 8.06 -52.49 -0.42 3.00 16 9 S 2.68 66.37 4.24 -107.50 -0.46 65.91 16 10 O -1.01 -27.04 16.02 -57.17 -0.92 -27.95 16 11 O -1.01 -26.71 16.31 -57.17 -0.93 -27.64 16 12 N -1.12 -21.17 6.00 -10.61 -0.06 -21.23 16 13 C 0.14 2.32 5.94 -4.04 -0.02 2.29 16 14 C -0.05 -0.69 3.91 -92.51 -0.36 -1.05 16 15 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.07 -0.74 7.78 -28.63 -0.22 -0.96 16 17 C -0.13 -1.65 7.42 -104.96 -0.78 -2.43 16 18 C -0.10 -1.13 10.06 -39.43 -0.40 -1.53 16 19 C -0.12 -1.33 10.04 -39.64 -0.40 -1.73 16 20 C -0.12 -1.40 10.04 -39.65 -0.40 -1.80 16 21 C -0.09 -1.19 10.06 -39.44 -0.40 -1.59 16 22 C -0.12 -1.62 6.86 -104.96 -0.72 -2.34 16 23 H 0.28 7.38 8.31 -40.82 -0.34 7.05 16 24 H 0.41 6.58 8.65 -34.47 -0.30 6.29 16 25 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 26 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.10 0.99 7.98 -51.93 -0.41 0.58 16 29 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 288.02 15.07 4.34 4.34 Total: -1.00 -33.58 288.02 -8.96 -42.54 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.71 Total: 5.96 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: -3.48 Total: -34.92 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.71 Total: -44.41 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -1.85 Total: -55.60 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.51 Total: 16.17 kcal Atomic # 16 Polarization: 66.37 SS G_CDS: -0.46 Total: 65.91 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.58 -8.96 -42.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090993428.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.624 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds