Wall clock time and date at job start Mon Mar 30 2020 04:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00344 * 2 1 4 4 H 1.48494 * 109.47212 * 269.99738 * 3 2 1 5 5 H 1.48498 * 109.47040 * 30.00044 * 3 2 1 6 6 H 1.48501 * 109.47000 * 150.00154 * 3 2 1 7 7 C 1.37881 * 119.99301 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99981 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99622 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.39973 * 66.45820 * 9 7 2 11 11 O 1.42100 * 106.39873 * 293.53987 * 9 7 2 12 12 N 1.65597 * 107.21488 * 179.97438 * 9 7 2 13 13 C 1.46501 * 119.99963 * 65.00316 * 12 9 7 14 14 C 1.53000 * 109.47407 * 164.99768 * 13 12 9 15 15 H 1.09006 * 112.82934 * 313.38026 * 14 13 12 16 16 C 1.52256 * 113.59626 * 182.15460 * 14 13 12 17 17 C 1.50555 * 87.23657 * 245.41420 * 16 14 13 18 18 C 1.38809 * 147.30887 * 179.67986 * 17 16 14 19 19 C 1.38071 * 120.09431 * 179.97438 * 18 17 16 20 20 C 1.38235 * 119.97684 * 0.43235 * 19 18 17 21 21 C 1.38061 * 119.98048 * 359.78368 * 20 19 18 22 22 C 1.37725 * 92.76440 * 359.97438 * 17 16 14 23 23 H 0.97008 * 119.99433 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00415 * 244.99505 * 12 9 7 25 25 H 1.09000 * 109.47494 * 44.99676 * 13 12 9 26 26 H 1.09006 * 109.47127 * 284.99653 * 13 12 9 27 27 H 1.08999 * 113.59221 * 130.82223 * 16 14 13 28 28 H 1.09006 * 113.58304 * 0.02562 * 16 14 13 29 29 H 1.08003 * 119.95490 * 0.33800 * 18 17 16 30 30 H 1.08000 * 120.00916 * 180.22079 * 19 18 17 31 31 H 1.08002 * 120.00501 * 179.76769 * 20 19 18 32 32 H 1.08001 * 119.95442 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 1.4643 -2.1294 0.0005 9 16 3.7665 -1.1943 0.0012 10 8 4.1672 -0.6495 1.2510 11 8 4.1682 -0.6501 -1.2485 12 7 4.2565 -2.7761 0.0025 13 6 3.9616 -3.6352 -1.1470 14 6 4.8202 -4.8993 -1.0725 15 1 5.8660 -4.6877 -0.8496 16 6 4.6255 -5.8388 -2.2548 17 6 4.0508 -6.8305 -1.2786 18 6 3.4912 -8.0853 -1.0811 19 6 3.1186 -8.4855 0.1868 20 6 3.2947 -7.6322 1.2600 21 6 3.8471 -6.3822 1.0641 22 6 4.2274 -5.9809 -0.2091 23 1 -0.4850 0.8402 -0.0004 24 1 4.7389 -3.1338 0.7641 25 1 4.1848 -3.0981 -2.0688 26 1 2.9071 -3.9109 -1.1334 27 1 5.5600 -6.1665 -2.7102 28 1 3.9024 -5.4762 -2.9855 29 1 3.3524 -8.7519 -1.9194 30 1 2.6867 -9.4635 0.3394 31 1 3.0000 -7.9433 2.2514 32 1 3.9841 -5.7157 1.9029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090993428.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:08 Heat of formation + Delta-G solvation = -45.045792 kcal Electronic energy + Delta-G solvation = -17825.324071 eV Core-core repulsion = 14877.753741 eV Total energy + Delta-G solvation = -2947.570330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.61900 -37.73446 -37.26567 -36.49733 -35.22379 -35.00160 -31.58399 -28.98164 -28.55653 -26.77850 -24.21855 -22.28114 -21.22452 -20.59626 -19.46669 -18.56495 -17.65399 -17.57168 -17.00044 -16.15439 -15.88484 -15.68470 -15.36691 -15.05349 -14.85003 -14.65153 -13.94455 -13.78465 -13.42871 -13.40454 -13.09322 -12.97913 -12.72445 -12.61536 -12.55062 -12.37800 -11.82907 -11.68774 -11.33649 -11.28685 -11.14441 -10.25961 -9.69664 -9.49909 -8.96464 -7.52860 0.14304 0.44613 0.49152 1.05741 1.15321 1.22460 1.89639 2.41838 2.55657 2.86199 3.23002 3.32534 3.55164 3.70173 3.88846 4.18799 4.24822 4.27125 4.34596 4.57067 4.70720 4.74883 4.76956 4.90980 5.02565 5.06458 5.21661 5.29200 5.38859 5.51862 5.62288 5.86863 6.00544 6.13664 6.28467 6.53660 8.21401 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.031272 B = 0.005327 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.153096 B = 5255.265958 C = 5494.161313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.106 3.894 3 Si 0.828 3.172 4 H -0.237 1.237 5 H -0.221 1.221 6 H -0.228 1.228 7 C -1.038 5.038 8 H 0.102 0.898 9 S 2.702 3.298 10 O -1.029 7.029 11 O -1.027 7.027 12 N -1.108 6.108 13 C 0.134 3.866 14 C -0.050 4.050 15 H 0.118 0.882 16 C -0.058 4.058 17 C -0.141 4.141 18 C -0.107 4.107 19 C -0.122 4.122 20 C -0.129 4.129 21 C -0.114 4.114 22 C -0.149 4.149 23 H 0.291 0.709 24 H 0.419 0.581 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.139 0.861 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 -15.309 -2.354 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.110 4.110 3 Si 0.645 3.355 4 H -0.160 1.160 5 H -0.143 1.143 6 H -0.151 1.151 7 C -1.171 5.171 8 H 0.120 0.880 9 S 2.801 3.199 10 O -1.020 7.020 11 O -1.016 7.016 12 N -0.869 5.869 13 C 0.008 3.992 14 C -0.069 4.069 15 H 0.136 0.864 16 C -0.095 4.095 17 C -0.142 4.142 18 C -0.125 4.125 19 C -0.140 4.140 20 C -0.147 4.147 21 C -0.132 4.132 22 C -0.149 4.149 23 H 0.101 0.899 24 H 0.253 0.747 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.138 0.862 28 H 0.121 0.879 29 H 0.157 0.843 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.293 -14.414 -2.508 16.818 hybrid contribution -0.754 0.288 0.665 1.046 sum 7.539 -14.126 -1.843 16.118 Atomic orbital electron populations 1.70028 1.07559 1.30484 1.40484 1.25212 0.95656 1.01597 0.88545 0.87449 0.82815 0.82571 0.82714 1.15973 1.14304 1.15089 1.30993 1.18216 1.01520 1.66346 0.87960 1.00387 0.75558 0.71594 0.72350 1.93436 1.85211 1.77495 1.45828 1.93375 1.84631 1.77469 1.46158 1.54955 1.73766 1.29860 1.28300 1.21204 0.98951 0.90657 0.88402 1.21335 1.00219 0.91093 0.94270 0.86412 1.21540 1.02488 0.90247 0.95257 1.22175 0.99144 0.94945 0.97890 1.20753 0.98733 0.94924 0.98070 1.21349 0.99903 1.00682 0.92063 1.21294 0.99500 0.93481 1.00430 1.20766 0.99271 0.96989 0.96142 1.22057 1.00492 0.97958 0.94393 0.89854 0.74670 0.89425 0.92729 0.86217 0.87892 0.84311 0.83176 0.83951 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.08 13.96 21.45 0.30 -49.79 16 2 C 0.11 6.17 5.47 84.65 0.46 6.64 16 3 Si 0.83 41.31 26.54 68.60 1.82 43.13 16 4 H -0.24 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.22 -9.73 7.11 99.48 0.71 -9.03 16 6 H -0.23 -11.69 5.61 99.48 0.56 -11.13 16 7 C -1.04 -58.97 10.26 67.74 0.69 -58.28 16 8 H 0.10 6.00 8.06 -2.91 -0.02 5.98 16 9 S 2.70 133.41 4.24 -56.49 -0.24 133.17 16 10 O -1.03 -54.76 16.02 -128.00 -2.05 -56.81 16 11 O -1.03 -53.52 16.31 -128.00 -2.09 -55.61 16 12 N -1.11 -41.31 6.00 -187.48 -1.12 -42.43 16 13 C 0.13 4.33 5.94 86.38 0.51 4.84 16 14 C -0.05 -1.22 3.91 -12.02 -0.05 -1.27 16 15 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 16 C -0.06 -1.14 7.78 29.37 0.23 -0.91 16 17 C -0.14 -3.32 7.42 -20.08 -0.15 -3.47 16 18 C -0.11 -2.22 10.06 22.37 0.22 -1.99 16 19 C -0.12 -2.41 10.04 22.23 0.22 -2.19 16 20 C -0.13 -2.86 10.04 22.23 0.22 -2.63 16 21 C -0.11 -2.98 10.06 22.36 0.22 -2.76 16 22 C -0.15 -3.96 6.86 -20.09 -0.14 -4.10 16 23 H 0.29 15.31 8.31 -92.70 -0.77 14.54 16 24 H 0.42 13.35 8.65 -96.75 -0.84 12.52 16 25 H 0.09 2.77 7.75 -2.39 -0.02 2.76 16 26 H 0.05 1.90 8.04 -2.38 -0.02 1.88 16 27 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.10 1.89 7.98 -2.38 -0.02 1.88 16 29 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -71.23 288.02 -0.77 -72.00 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.15 Total: 22.44 kcal Atomic # 6 Polarization: -68.57 SS G_CDS: 2.46 Total: -66.11 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -0.82 Total: -92.22 kcal Atomic # 8 Polarization: -108.27 SS G_CDS: -4.14 Total: -112.41 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.82 Total: 43.13 kcal Atomic # 16 Polarization: 133.41 SS G_CDS: -0.24 Total: 133.17 kcal Total: -71.23 -0.77 -72.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090993428.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.956 kcal (2) G-P(sol) polarization free energy of solvation -71.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds