Wall clock time and date at job start Mon Mar 30 2020 05:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00547 * 2 1 4 4 H 1.48500 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46681 * 299.99918 * 3 2 1 6 6 H 1.48491 * 109.47114 * 59.99990 * 3 2 1 7 7 C 1.38823 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99709 * 164.29532 * 7 2 1 9 9 N 1.36934 * 119.99484 * 344.29693 * 7 2 1 10 10 C 1.47092 * 121.04583 * 155.54327 * 9 7 2 11 11 C 1.53065 * 108.78546 * 115.38111 * 10 9 7 12 12 C 1.52019 * 109.15039 * 46.43763 * 11 10 9 13 13 C 1.33708 * 123.84438 * 341.21689 * 12 11 10 14 14 S 1.75522 * 110.96774 * 180.22313 * 13 12 11 15 15 C 1.70252 * 92.71785 * 359.87970 * 14 13 12 16 16 N 1.38204 * 124.65883 * 180.02562 * 15 14 13 17 17 C 1.36811 * 110.69106 * 0.28907 * 15 14 13 18 18 C 1.46440 * 123.32118 * 179.76062 * 17 15 14 19 19 N 1.34781 * 119.99969 * 270.02299 * 18 17 15 20 20 O 1.21738 * 120.00336 * 90.02516 * 18 17 15 21 21 C 1.47126 * 121.06204 * 335.56854 * 9 7 2 22 22 H 0.97006 * 119.99706 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.58713 * 355.59131 * 10 9 7 24 24 H 1.09001 * 109.58699 * 235.17347 * 10 9 7 25 25 H 1.08996 * 109.52319 * 286.53133 * 11 10 9 26 26 H 1.08997 * 109.57487 * 166.36595 * 11 10 9 27 27 H 0.97001 * 119.99707 * 0.02856 * 16 15 14 28 28 H 0.96998 * 120.00152 * 179.74848 * 16 15 14 29 29 H 0.97005 * 119.99565 * 0.02562 * 19 18 17 30 30 H 0.96997 * 120.00222 * 179.97438 * 19 18 17 31 31 H 1.08998 * 109.83071 * 104.35098 * 21 9 7 32 32 H 1.09007 * 109.80710 * 343.43670 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8916 2.3963 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0599 -1.2199 -0.2526 9 7 1.3637 -2.3658 0.3220 10 6 1.8580 -3.6657 -0.1570 11 6 2.2957 -4.5013 1.0484 12 6 1.2228 -4.4268 2.1228 13 6 0.2820 -3.4780 2.1712 14 16 -0.7756 -3.7119 3.5524 15 6 0.0625 -5.1039 4.0609 16 7 -0.2632 -5.8543 5.1748 17 6 1.1062 -5.3743 3.2187 18 6 2.0143 -6.5086 3.4016 19 7 3.1324 -6.3644 4.1403 20 8 1.7593 -7.5817 2.8864 21 6 0.1524 -2.3554 1.1570 22 1 -0.4850 0.8401 0.0004 23 1 2.7077 -3.5109 -0.8222 24 1 1.0626 -4.1846 -0.6919 25 1 3.2334 -4.1093 1.4421 26 1 2.4339 -5.5384 0.7430 27 1 -1.0173 -5.5982 5.7285 28 1 0.2598 -6.6394 5.4006 29 1 3.3353 -5.5094 4.5511 30 1 3.7337 -7.1158 4.2617 31 1 -0.7273 -2.5194 0.5346 32 1 0.0677 -1.3990 1.6732 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104434315.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:19 Heat of formation + Delta-G solvation = 10.152727 kcal Electronic energy + Delta-G solvation = -18194.406203 eV Core-core repulsion = 15281.522212 eV Total energy + Delta-G solvation = -2912.883991 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56052 -37.57905 -35.96038 -33.69498 -33.34638 -31.59953 -29.74100 -28.35710 -24.94947 -24.43081 -22.37919 -21.59552 -19.78181 -18.16861 -17.90690 -17.40906 -16.64662 -16.32062 -15.20212 -14.87581 -14.72533 -14.00194 -13.81751 -13.65252 -13.45029 -12.92403 -12.52224 -12.37213 -11.83515 -11.44732 -11.06495 -11.01818 -10.79950 -10.46020 -10.36265 -9.91092 -9.86533 -9.67676 -9.58705 -9.56440 -8.59383 -7.81901 -7.06963 -6.80475 -5.85826 -3.23643 1.70310 1.72646 2.42086 2.83348 2.98092 3.35904 3.43612 3.45665 3.88248 3.94366 4.46128 5.30587 5.34693 5.44963 5.63457 5.84606 6.03553 6.11935 6.26094 6.29883 6.70919 6.79251 6.84130 6.92987 7.01083 7.16551 7.27034 7.44027 7.52256 7.56660 7.75232 8.32401 8.42653 9.13077 9.75855 10.33639 11.25248 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.006214 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.719375 B = 4504.741179 C = 5033.915567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.001 3.999 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.587 5.587 10 C 0.145 3.855 11 C -0.073 4.073 12 C -0.041 4.041 13 C -0.208 4.208 14 S 0.136 5.864 15 C 0.105 3.895 16 N -0.843 5.843 17 C -0.269 4.269 18 C 0.603 3.397 19 N -0.851 5.851 20 O -0.548 6.548 21 C 0.247 3.753 22 H 0.255 0.745 23 H 0.062 0.938 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.402 0.598 28 H 0.399 0.601 29 H 0.403 0.597 30 H 0.396 0.604 31 H 0.044 0.956 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -8.678 10.844 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.309 5.309 10 C 0.018 3.982 11 C -0.115 4.115 12 C -0.052 4.052 13 C -0.326 4.326 14 S 0.395 5.605 15 C -0.118 4.118 16 N -0.386 5.386 17 C -0.291 4.291 18 C 0.387 3.613 19 N -0.414 5.414 20 O -0.425 6.425 21 C 0.119 3.881 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.231 0.769 28 H 0.229 0.771 29 H 0.231 0.769 30 H 0.226 0.774 31 H 0.062 0.938 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.061 -8.335 10.931 13.747 hybrid contribution 1.891 -0.140 0.254 1.913 sum 1.829 -8.475 11.186 14.152 Atomic orbital electron populations 1.70003 1.05229 1.25647 1.54256 1.25015 0.95392 0.98424 1.00902 0.86171 0.79298 0.83715 0.77313 1.20236 1.21655 1.21514 1.19247 0.92501 0.84305 1.41633 0.91095 1.44063 1.30181 1.01508 1.55158 1.20910 0.97598 0.86930 0.92771 1.21042 0.95571 0.99790 0.95056 1.19761 0.97927 0.92350 0.95143 1.25879 1.00007 1.05384 1.01376 1.82913 1.34072 1.19201 1.24282 1.21337 0.98946 0.98963 0.92541 1.41289 1.37590 1.31804 1.27888 1.19348 1.03111 1.03959 1.02642 1.17564 0.80347 0.87019 0.76346 1.43973 1.25417 1.17066 1.54941 1.90823 1.74885 1.28471 1.48350 1.19581 0.89167 0.92076 0.87269 0.93456 0.91899 0.95237 0.91316 0.92054 0.76941 0.77138 0.76875 0.77421 0.93792 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.54 11.08 55.49 0.62 -24.92 16 2 C 0.00 0.03 4.99 -17.43 -0.09 -0.06 16 3 Si 0.91 21.20 29.58 -169.99 -5.03 16.17 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.62 9.67 -15.06 -0.15 -6.77 16 8 H 0.07 1.86 7.88 -52.49 -0.41 1.44 16 9 N -0.59 -14.63 2.98 -172.91 -0.52 -15.15 16 10 C 0.14 3.08 6.45 -3.69 -0.02 3.06 16 11 C -0.07 -1.39 5.97 -27.20 -0.16 -1.56 16 12 C -0.04 -0.81 5.98 -102.73 -0.61 -1.43 16 13 C -0.21 -4.24 6.40 -35.34 -0.23 -4.46 16 14 S 0.14 2.21 22.98 -107.50 -2.47 -0.26 16 15 C 0.11 1.62 7.32 -15.19 -0.11 1.50 16 16 N -0.84 -9.57 9.03 30.84 0.28 -9.29 16 17 C -0.27 -4.65 5.74 -104.29 -0.60 -5.25 16 18 C 0.60 9.73 6.60 -12.96 -0.09 9.64 16 19 N -0.85 -9.61 8.87 30.21 0.27 -9.35 16 20 O -0.55 -10.78 17.95 5.15 0.09 -10.69 16 21 C 0.25 5.91 5.36 -4.29 -0.02 5.89 16 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.06 1.27 7.95 -51.93 -0.41 0.86 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 27 H 0.40 3.54 8.95 -40.82 -0.37 3.17 16 28 H 0.40 4.22 8.26 -40.82 -0.34 3.88 16 29 H 0.40 3.90 8.81 -40.82 -0.36 3.54 16 30 H 0.40 3.63 8.93 -40.82 -0.36 3.27 16 31 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 2.47 6.41 -51.93 -0.33 2.13 16 LS Contribution 286.28 15.07 4.31 4.31 Total: -1.00 -32.09 286.28 -7.93 -40.02 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -3.41 Total: 8.58 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.08 Total: 0.57 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.65 Total: -58.71 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.47 Total: -0.26 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.09 -7.93 -40.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104434315.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.175 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds