Wall clock time and date at job start Mon Mar 30 2020 05:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00547 * 2 1 4 4 H 1.48500 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46681 * 299.99918 * 3 2 1 6 6 H 1.48491 * 109.47114 * 59.99990 * 3 2 1 7 7 C 1.38823 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99709 * 164.29532 * 7 2 1 9 9 N 1.36934 * 119.99484 * 344.29693 * 7 2 1 10 10 C 1.47092 * 121.04583 * 155.54327 * 9 7 2 11 11 C 1.53065 * 108.78546 * 115.38111 * 10 9 7 12 12 C 1.52019 * 109.15039 * 46.43763 * 11 10 9 13 13 C 1.33708 * 123.84438 * 341.21689 * 12 11 10 14 14 S 1.75522 * 110.96774 * 180.22313 * 13 12 11 15 15 C 1.70252 * 92.71785 * 359.87970 * 14 13 12 16 16 N 1.38204 * 124.65883 * 180.02562 * 15 14 13 17 17 C 1.36811 * 110.69106 * 0.28907 * 15 14 13 18 18 C 1.46440 * 123.32118 * 179.76062 * 17 15 14 19 19 N 1.34781 * 119.99969 * 270.02299 * 18 17 15 20 20 O 1.21738 * 120.00336 * 90.02516 * 18 17 15 21 21 C 1.47126 * 121.06204 * 335.56854 * 9 7 2 22 22 H 0.97006 * 119.99706 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.58713 * 355.59131 * 10 9 7 24 24 H 1.09001 * 109.58699 * 235.17347 * 10 9 7 25 25 H 1.08996 * 109.52319 * 286.53133 * 11 10 9 26 26 H 1.08997 * 109.57487 * 166.36595 * 11 10 9 27 27 H 0.97001 * 119.99707 * 0.02856 * 16 15 14 28 28 H 0.96998 * 120.00152 * 179.74848 * 16 15 14 29 29 H 0.97005 * 119.99565 * 0.02562 * 19 18 17 30 30 H 0.96997 * 120.00222 * 179.97438 * 19 18 17 31 31 H 1.08998 * 109.83071 * 104.35098 * 21 9 7 32 32 H 1.09007 * 109.80710 * 343.43670 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8916 2.3963 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0599 -1.2199 -0.2526 9 7 1.3637 -2.3658 0.3220 10 6 1.8580 -3.6657 -0.1570 11 6 2.2957 -4.5013 1.0484 12 6 1.2228 -4.4268 2.1228 13 6 0.2820 -3.4780 2.1712 14 16 -0.7756 -3.7119 3.5524 15 6 0.0625 -5.1039 4.0609 16 7 -0.2632 -5.8543 5.1748 17 6 1.1062 -5.3743 3.2187 18 6 2.0143 -6.5086 3.4016 19 7 3.1324 -6.3644 4.1403 20 8 1.7593 -7.5817 2.8864 21 6 0.1524 -2.3554 1.1570 22 1 -0.4850 0.8401 0.0004 23 1 2.7077 -3.5109 -0.8222 24 1 1.0626 -4.1846 -0.6919 25 1 3.2334 -4.1093 1.4421 26 1 2.4339 -5.5384 0.7430 27 1 -1.0173 -5.5982 5.7285 28 1 0.2598 -6.6394 5.4006 29 1 3.3353 -5.5094 4.5511 30 1 3.7337 -7.1158 4.2617 31 1 -0.7273 -2.5194 0.5346 32 1 0.0677 -1.3990 1.6732 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104434315.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:19 Heat of formation + Delta-G solvation = -15.087043 kcal Electronic energy + Delta-G solvation = -18195.500682 eV Core-core repulsion = 15281.522212 eV Total energy + Delta-G solvation = -2913.978470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84885 -39.12327 -37.36331 -35.25647 -34.48936 -33.34992 -31.47501 -29.93520 -26.76349 -25.81262 -24.00894 -23.23918 -21.05865 -19.83092 -19.17614 -18.52888 -18.13390 -17.72120 -16.80336 -16.33261 -16.24377 -15.54587 -15.42024 -15.11282 -15.05041 -14.41581 -14.12106 -13.97380 -13.45041 -13.05460 -12.89424 -12.69001 -12.57990 -12.19243 -12.08216 -11.72989 -11.45570 -11.10976 -11.02517 -10.66772 -10.56209 -9.15913 -8.78805 -8.39181 -7.89027 -5.30610 0.34177 0.40270 1.02224 1.49946 1.51571 1.52763 1.58305 1.62170 2.53015 2.80978 2.87430 3.30377 3.64976 4.12714 4.15907 4.33807 4.51056 4.55458 4.71069 4.79280 5.05577 5.11979 5.19410 5.33278 5.50757 5.63565 5.83696 5.89081 6.10160 6.33147 6.42364 6.63042 7.11317 7.34616 7.79370 8.35421 9.21142 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.006214 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.719375 B = 4504.741179 C = 5033.915567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.050 4.050 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.259 4.259 8 H 0.075 0.925 9 N -0.605 5.605 10 C 0.142 3.858 11 C -0.064 4.064 12 C -0.036 4.036 13 C -0.258 4.258 14 S 0.186 5.814 15 C 0.127 3.873 16 N -0.819 5.819 17 C -0.298 4.298 18 C 0.607 3.393 19 N -0.824 5.824 20 O -0.589 6.589 21 C 0.263 3.737 22 H 0.252 0.748 23 H 0.070 0.930 24 H 0.021 0.979 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.418 0.582 28 H 0.409 0.591 29 H 0.414 0.586 30 H 0.410 0.590 31 H 0.011 0.989 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 -9.635 12.934 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.388 4.388 8 H 0.092 0.908 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.105 4.105 12 C -0.047 4.047 13 C -0.376 4.376 14 S 0.444 5.556 15 C -0.100 4.100 16 N -0.363 5.363 17 C -0.319 4.319 18 C 0.391 3.609 19 N -0.388 5.388 20 O -0.469 6.469 21 C 0.136 3.864 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.040 0.960 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.250 0.750 28 H 0.240 0.760 29 H 0.245 0.755 30 H 0.242 0.758 31 H 0.029 0.971 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.929 -9.319 13.083 16.089 hybrid contribution 1.549 0.064 -0.302 1.580 sum 2.478 -9.255 12.780 15.973 Atomic orbital electron populations 1.70163 1.06615 1.26000 1.55710 1.25773 0.96147 1.01422 1.01180 0.85161 0.78599 0.79639 0.76773 1.19011 1.21953 1.21589 1.19570 0.92802 0.85289 1.41178 0.90778 1.44293 1.30185 1.02200 1.56186 1.21015 0.97458 0.85912 0.94005 1.20886 0.95820 0.99729 0.94103 1.19942 0.97060 0.92258 0.95422 1.25305 1.03057 1.05533 1.03719 1.82611 1.32125 1.19153 1.21713 1.21442 0.97546 0.98309 0.92683 1.41329 1.37673 1.31057 1.26236 1.19258 1.05019 1.04661 1.02967 1.17381 0.81080 0.85917 0.76553 1.43708 1.23884 1.18158 1.53010 1.90810 1.76018 1.29732 1.50356 1.19016 0.87813 0.92120 0.87457 0.93875 0.91199 0.96043 0.90496 0.90938 0.75006 0.76042 0.75521 0.75778 0.97119 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.78 11.08 21.65 0.24 -54.54 16 2 C -0.05 -2.76 4.99 84.87 0.42 -2.34 16 3 Si 0.97 44.17 29.58 68.60 2.03 46.20 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.26 -14.11 9.67 84.04 0.81 -13.30 16 8 H 0.07 3.90 7.88 -2.92 -0.02 3.87 16 9 N -0.61 -31.04 2.98 -700.98 -2.09 -33.13 16 10 C 0.14 6.14 6.45 86.29 0.56 6.69 16 11 C -0.06 -2.41 5.97 30.29 0.18 -2.23 16 12 C -0.04 -1.37 5.98 -18.64 -0.11 -1.48 16 13 C -0.26 -10.58 6.40 25.02 0.16 -10.42 16 14 S 0.19 5.75 22.98 -56.49 -1.30 4.45 16 15 C 0.13 3.54 7.32 83.35 0.61 4.15 16 16 N -0.82 -15.49 9.03 -56.34 -0.51 -16.00 16 17 C -0.30 -9.68 5.74 -19.65 -0.11 -9.79 16 18 C 0.61 18.07 6.60 86.38 0.57 18.64 16 19 N -0.82 -16.02 8.87 -176.53 -1.57 -17.59 16 20 O -0.59 -22.03 17.95 -4.47 -0.08 -22.11 16 21 C 0.26 13.17 5.36 85.88 0.46 13.63 16 22 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 23 H 0.07 2.85 7.95 -2.38 -0.02 2.83 16 24 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 27 H 0.42 5.59 8.95 -92.71 -0.83 4.76 16 28 H 0.41 6.99 8.26 -92.71 -0.77 6.23 16 29 H 0.41 6.56 8.81 -92.70 -0.82 5.75 16 30 H 0.41 6.18 8.93 -92.71 -0.83 5.35 16 31 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 3.54 6.41 -2.38 -0.02 3.52 16 Total: -1.00 -70.71 286.28 -1.75 -72.46 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -2.02 Total: 16.69 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 3.55 Total: 3.57 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -3.92 Total: -121.26 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.08 Total: -22.11 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.30 Total: 4.45 kcal Total: -70.71 -1.75 -72.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104434315.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.372 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds