Wall clock time and date at job start Mon Mar 30 2020 04:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 120.00330 * 2 1 4 4 H 1.48503 * 109.47033 * 269.99974 * 3 2 1 5 5 H 1.48496 * 109.46892 * 29.99780 * 3 2 1 6 6 H 1.48498 * 109.47100 * 149.99852 * 3 2 1 7 7 C 1.38800 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99867 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00202 * 180.02562 * 7 2 1 10 10 C 1.81008 * 100.00029 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46955 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00228 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99723 * 179.97438 * 11 10 9 14 14 C 1.45196 * 116.99872 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47123 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.46925 * 180.02562 * 15 14 13 17 17 C 1.38676 * 120.41823 * 269.72219 * 16 15 14 18 18 C 1.38621 * 118.41711 * 179.78578 * 17 16 15 19 19 C 1.38230 * 119.16265 * 0.51209 * 18 17 16 20 20 N 1.31844 * 120.76473 * 359.72963 * 19 18 17 21 21 C 1.31891 * 121.72676 * 359.97438 * 20 19 18 22 22 H 0.96997 * 119.99650 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46920 * 59.99681 * 10 9 7 24 24 H 1.08995 * 109.46941 * 300.00141 * 10 9 7 25 25 H 1.09004 * 109.47123 * 60.00186 * 14 13 11 26 26 H 1.09004 * 109.47572 * 300.00153 * 14 13 11 27 27 H 1.09000 * 109.46497 * 60.00280 * 15 14 13 28 28 H 1.09000 * 109.47312 * 300.00059 * 15 14 13 29 29 H 1.08002 * 120.78654 * 0.02562 * 17 16 15 30 30 H 1.08002 * 120.42153 * 180.21740 * 18 17 16 31 31 H 1.08005 * 119.61673 * 179.74765 * 19 18 17 32 32 H 1.07994 * 119.61862 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5730 -3.2327 0.0008 12 8 6.3411 -2.3000 0.0014 13 8 6.0436 -4.4898 0.0011 14 6 7.4863 -4.6534 0.0016 15 6 7.8305 -6.1442 0.0025 16 6 9.3279 -6.3141 0.0036 17 6 10.0258 -6.3995 -1.1917 18 6 11.4028 -6.5509 -1.1423 19 6 12.0289 -6.6218 0.0880 20 7 11.3326 -6.5420 1.2047 21 6 10.0223 -6.3920 1.1958 22 1 -0.4849 0.8400 0.0004 23 1 3.6439 -3.4315 -0.8893 24 1 3.6432 -3.4319 0.8906 25 1 7.9050 -4.1837 0.8917 26 1 7.9056 -4.1839 -0.8883 27 1 7.4118 -6.6142 -0.8873 28 1 7.4113 -6.6134 0.8927 29 1 9.5090 -6.3455 -2.1386 30 1 11.9787 -6.6173 -2.0536 31 1 13.1010 -6.7438 0.1350 32 1 9.4858 -6.3300 2.1310 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105556778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:06 Heat of formation + Delta-G solvation = -60.986108 kcal Electronic energy + Delta-G solvation = -16486.409016 eV Core-core repulsion = 13538.147463 eV Total energy + Delta-G solvation = -2948.261554 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61334 -40.07703 -36.55010 -34.44246 -32.51062 -32.37152 -30.34474 -28.97694 -25.71173 -24.50403 -23.93791 -21.77855 -21.13987 -18.00560 -17.45416 -17.29693 -16.98415 -16.30606 -15.85777 -15.44476 -15.03349 -14.30506 -14.27620 -14.11916 -13.70205 -13.42459 -13.18925 -12.86401 -12.70736 -12.12216 -11.90826 -11.70750 -11.34478 -11.06774 -10.76629 -10.55283 -10.26473 -10.14064 -9.89559 -9.79614 -9.35787 -9.07266 -8.63646 -7.04525 -6.35218 -4.09692 0.69204 0.90031 2.38470 2.49913 3.05812 3.27905 3.43129 3.44396 3.51688 4.08932 4.26336 4.40229 4.40621 4.57964 4.59854 4.69507 4.80148 4.85022 5.03598 5.10250 5.11049 5.25383 5.43850 5.50106 5.63379 5.66309 5.73982 5.91741 5.93167 6.31892 6.53590 7.60554 7.87638 8.00105 8.36274 9.09868 10.73802 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.055615 B = 0.002972 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.338997 B = 9419.367493 C = 9619.089507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.092 0.908 9 S -0.141 6.141 10 C -0.099 4.099 11 C 0.479 3.521 12 O -0.489 6.489 13 O -0.359 6.359 14 C 0.072 3.928 15 C -0.075 4.075 16 C -0.134 4.134 17 C -0.069 4.069 18 C -0.171 4.171 19 C 0.095 3.905 20 N -0.484 5.484 21 C 0.106 3.894 22 H 0.272 0.728 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.156 0.844 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.510 -14.569 -1.711 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.110 0.890 9 S 0.086 5.914 10 C -0.247 4.247 11 C 0.320 3.680 12 O -0.375 6.375 13 O -0.277 6.277 14 C -0.003 4.003 15 C -0.113 4.113 16 C -0.136 4.136 17 C -0.095 4.095 18 C -0.191 4.191 19 C -0.062 4.062 20 N -0.192 5.192 21 C -0.051 4.051 22 H 0.082 0.918 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.173 0.827 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 20.772 -13.377 -0.902 24.723 hybrid contribution -1.063 -0.151 -0.926 1.418 sum 19.709 -13.528 -1.828 23.975 Atomic orbital electron populations 1.69928 1.05875 1.27892 1.47588 1.24699 0.94466 0.98955 0.93086 0.86746 0.81863 0.83312 0.79985 1.19128 1.19777 1.15957 1.22258 0.87651 0.97769 1.59322 0.89026 1.84822 1.10130 0.98928 1.97565 1.23009 0.89777 1.04526 1.07408 1.23273 0.91996 0.80328 0.72401 1.90673 1.58919 1.43732 1.44177 1.86478 1.25184 1.31232 1.84793 1.22927 0.78166 0.96172 1.03029 1.20431 0.90467 0.95202 1.05231 1.20702 0.96372 1.01986 0.94546 1.21592 0.94284 0.95225 0.98365 1.22179 0.95317 1.01812 0.99791 1.22820 1.00418 0.95154 0.87822 1.67723 1.08268 1.11708 1.31516 1.22778 0.89995 0.94624 0.97669 0.91797 0.87156 0.87075 0.91018 0.91153 0.89349 0.89154 0.84539 0.84595 0.82709 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 13.97 55.49 0.78 -25.23 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.28 27.74 -169.99 -4.72 16.56 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 7 C -0.52 -14.72 10.04 30.94 0.31 -14.41 16 8 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 9 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 10 C -0.10 -1.90 6.27 36.00 0.23 -1.67 16 11 C 0.48 8.55 7.97 36.00 0.29 8.84 16 12 O -0.49 -10.09 15.61 -18.75 -0.29 -10.38 16 13 O -0.36 -5.18 10.22 -39.26 -0.40 -5.58 16 14 C 0.07 0.82 5.45 37.16 0.20 1.03 16 15 C -0.08 -0.62 5.75 -27.88 -0.16 -0.78 16 16 C -0.13 -1.14 5.15 -104.48 -0.54 -1.67 16 17 C -0.07 -0.52 9.86 -39.28 -0.39 -0.91 16 18 C -0.17 -1.19 10.11 -39.44 -0.40 -1.59 16 19 C 0.09 0.77 11.18 -17.55 -0.20 0.57 16 20 N -0.48 -4.98 10.36 -13.25 -0.14 -5.12 16 21 C 0.11 0.98 10.86 -17.55 -0.19 0.79 16 22 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.11 1.96 8.14 -51.92 -0.42 1.53 16 24 H 0.11 1.97 8.14 -51.92 -0.42 1.55 16 25 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 27 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 28 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 31 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -33.01 302.86 -6.94 -39.96 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.80 Total: -2.18 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -0.94 Total: -7.13 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.64 Total: -30.35 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.69 Total: -15.96 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.72 Total: 16.56 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.01 -6.94 -39.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105556778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.030 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds