Wall clock time and date at job start Mon Mar 30 2020 04:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 120.00330 * 2 1 4 4 H 1.48503 * 109.47033 * 269.99974 * 3 2 1 5 5 H 1.48496 * 109.46892 * 29.99780 * 3 2 1 6 6 H 1.48498 * 109.47100 * 149.99852 * 3 2 1 7 7 C 1.38800 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99867 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00202 * 180.02562 * 7 2 1 10 10 C 1.81008 * 100.00029 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46955 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00228 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99723 * 179.97438 * 11 10 9 14 14 C 1.45196 * 116.99872 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47123 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.46925 * 180.02562 * 15 14 13 17 17 C 1.38676 * 120.41823 * 269.72219 * 16 15 14 18 18 C 1.38621 * 118.41711 * 179.78578 * 17 16 15 19 19 C 1.38230 * 119.16265 * 0.51209 * 18 17 16 20 20 N 1.31844 * 120.76473 * 359.72963 * 19 18 17 21 21 C 1.31891 * 121.72676 * 359.97438 * 20 19 18 22 22 H 0.96997 * 119.99650 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46920 * 59.99681 * 10 9 7 24 24 H 1.08995 * 109.46941 * 300.00141 * 10 9 7 25 25 H 1.09004 * 109.47123 * 60.00186 * 14 13 11 26 26 H 1.09004 * 109.47572 * 300.00153 * 14 13 11 27 27 H 1.09000 * 109.46497 * 60.00280 * 15 14 13 28 28 H 1.09000 * 109.47312 * 300.00059 * 15 14 13 29 29 H 1.08002 * 120.78654 * 0.02562 * 17 16 15 30 30 H 1.08002 * 120.42153 * 180.21740 * 18 17 16 31 31 H 1.08005 * 119.61673 * 179.74765 * 19 18 17 32 32 H 1.07994 * 119.61862 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5730 -3.2327 0.0008 12 8 6.3411 -2.3000 0.0014 13 8 6.0436 -4.4898 0.0011 14 6 7.4863 -4.6534 0.0016 15 6 7.8305 -6.1442 0.0025 16 6 9.3279 -6.3141 0.0036 17 6 10.0258 -6.3995 -1.1917 18 6 11.4028 -6.5509 -1.1423 19 6 12.0289 -6.6218 0.0880 20 7 11.3326 -6.5420 1.2047 21 6 10.0223 -6.3920 1.1958 22 1 -0.4849 0.8400 0.0004 23 1 3.6439 -3.4315 -0.8893 24 1 3.6432 -3.4319 0.8906 25 1 7.9050 -4.1837 0.8917 26 1 7.9056 -4.1839 -0.8883 27 1 7.4118 -6.6142 -0.8873 28 1 7.4113 -6.6134 0.8927 29 1 9.5090 -6.3455 -2.1386 30 1 11.9787 -6.6173 -2.0536 31 1 13.1010 -6.7438 0.1350 32 1 9.4858 -6.3300 2.1310 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105556778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:06 Heat of formation + Delta-G solvation = -80.973577 kcal Electronic energy + Delta-G solvation = -16487.275738 eV Core-core repulsion = 13538.147463 eV Total energy + Delta-G solvation = -2949.128276 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.58525 -41.05805 -37.82066 -35.21728 -34.69158 -32.96837 -31.66846 -29.91923 -27.89293 -25.32960 -24.53326 -22.57936 -22.36413 -19.95081 -18.77104 -17.98810 -17.94486 -17.32064 -17.23763 -17.01981 -16.17590 -15.82188 -15.42168 -15.06412 -14.90157 -14.37509 -14.27209 -13.97922 -13.97084 -13.38662 -13.06535 -12.98670 -12.88415 -12.76888 -12.47643 -11.90333 -11.66527 -11.60609 -11.18486 -10.77316 -10.62447 -10.42107 -9.97314 -9.06786 -8.52672 -6.26192 0.08142 0.31290 0.79318 1.07126 1.31689 1.37125 1.49651 1.84455 2.23458 2.63822 2.83037 2.85542 3.48209 3.66763 3.77846 3.87610 4.04067 4.05056 4.07379 4.12145 4.19087 4.32099 4.41969 4.58976 4.77363 4.86692 4.92703 5.17417 5.29051 5.31625 5.69757 5.76062 6.11659 6.62423 6.91475 7.00081 8.59576 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.055615 B = 0.002972 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.338997 B = 9419.367493 C = 9619.089507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.235 1.235 7 C -0.531 4.531 8 H 0.066 0.934 9 S -0.166 6.166 10 C -0.090 4.090 11 C 0.490 3.510 12 O -0.520 6.520 13 O -0.347 6.347 14 C 0.068 3.932 15 C -0.063 4.063 16 C -0.141 4.141 17 C -0.075 4.075 18 C -0.169 4.169 19 C 0.083 3.917 20 N -0.516 5.516 21 C 0.090 3.910 22 H 0.278 0.722 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.156 0.844 30 H 0.164 0.836 31 H 0.176 0.824 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.047 -15.216 -2.391 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.159 1.159 7 C -0.678 4.678 8 H 0.084 0.916 9 S 0.061 5.939 10 C -0.238 4.238 11 C 0.333 3.667 12 O -0.409 6.409 13 O -0.264 6.264 14 C -0.006 4.006 15 C -0.101 4.101 16 C -0.143 4.143 17 C -0.101 4.101 18 C -0.188 4.188 19 C -0.074 4.074 20 N -0.225 5.225 21 C -0.067 4.067 22 H 0.087 0.913 23 H 0.145 0.855 24 H 0.145 0.855 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.174 0.826 30 H 0.182 0.818 31 H 0.194 0.806 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 22.310 -14.053 -1.580 26.414 hybrid contribution -1.447 -0.136 -0.736 1.630 sum 20.863 -14.189 -2.316 25.337 Atomic orbital electron populations 1.70008 1.07317 1.29138 1.48744 1.25557 0.95281 1.02286 0.92798 0.85881 0.80712 0.79565 0.80299 1.18565 1.18357 1.15872 1.22406 0.89745 0.96941 1.58710 0.91554 1.84675 1.07145 1.04420 1.97699 1.22944 0.91439 1.00296 1.09111 1.22861 0.91102 0.81016 0.71753 1.90670 1.59446 1.44888 1.45849 1.86453 1.27227 1.28835 1.83912 1.23226 0.75999 0.98549 1.02848 1.20366 0.90565 0.92757 1.06420 1.20705 0.96268 1.02580 0.94751 1.21937 0.94810 0.94518 0.98841 1.22503 0.95361 1.00498 1.00461 1.23287 1.01539 0.94691 0.87863 1.67717 1.08891 1.12945 1.32905 1.22989 0.90079 0.95114 0.98496 0.91256 0.85450 0.85472 0.91485 0.91194 0.87997 0.88215 0.82637 0.81828 0.80650 0.81862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.69 13.97 21.65 0.30 -54.39 16 2 C 0.05 2.67 5.50 84.86 0.47 3.14 16 3 Si 0.91 43.67 27.74 68.60 1.90 45.57 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.23 -11.12 6.74 99.48 0.67 -10.45 16 7 C -0.53 -30.05 10.04 67.95 0.68 -29.37 16 8 H 0.07 3.97 8.03 -2.91 -0.02 3.94 16 9 S -0.17 -8.06 18.55 -56.49 -1.05 -9.10 16 10 C -0.09 -3.30 6.27 71.23 0.45 -2.86 16 11 C 0.49 16.70 7.97 71.23 0.57 17.27 16 12 O -0.52 -20.85 15.61 21.97 0.34 -20.51 16 13 O -0.35 -9.27 10.22 -51.44 -0.53 -9.79 16 14 C 0.07 1.43 5.45 71.98 0.39 1.82 16 15 C -0.06 -0.91 5.75 29.85 0.17 -0.73 16 16 C -0.14 -2.15 5.15 -19.77 -0.10 -2.25 16 17 C -0.08 -0.96 9.86 22.47 0.22 -0.74 16 18 C -0.17 -1.95 10.11 22.36 0.23 -1.72 16 19 C 0.08 1.21 11.18 84.69 0.95 2.15 16 20 N -0.52 -10.21 10.36 -195.85 -2.03 -12.24 16 21 C 0.09 1.58 10.86 84.67 0.92 2.50 16 22 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 23 H 0.13 4.29 8.14 -2.39 -0.02 4.27 16 24 H 0.13 4.31 8.14 -2.40 -0.02 4.29 16 25 H 0.07 1.51 8.13 -2.38 -0.02 1.49 16 26 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 27 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 28 H 0.10 1.26 8.09 -2.39 -0.02 1.24 16 29 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 30 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 31 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -70.48 302.86 4.97 -65.52 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.08 Total: 5.73 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 4.94 Total: -10.78 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -1.73 Total: -66.63 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.18 Total: -30.30 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.90 Total: 45.57 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.05 Total: -9.10 kcal Total: -70.48 4.97 -65.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105556778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.454 kcal (2) G-P(sol) polarization free energy of solvation -70.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds