Wall clock time and date at job start Mon Mar 30 2020 04:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00279 * 2 1 4 4 H 1.48503 * 109.46884 * 240.00036 * 3 2 1 5 5 H 1.48500 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47240 * 120.00110 * 3 2 1 7 7 C 1.37877 * 119.99512 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00378 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.34518 * 124.45746 * 269.96088 * 10 9 7 12 12 O 1.21458 * 125.70782 * 0.02562 * 11 10 9 13 13 C 1.47729 * 108.58486 * 180.02562 * 11 10 9 14 14 C 1.38575 * 134.24556 * 179.97438 * 13 11 10 15 15 C 1.38767 * 119.73247 * 179.97438 * 14 13 11 16 16 F 1.35106 * 119.80754 * 180.27465 * 15 14 13 17 17 C 1.38755 * 120.38489 * 0.02562 * 15 14 13 18 18 F 1.35098 * 119.80602 * 179.97438 * 17 15 14 19 19 C 1.38764 * 120.38389 * 359.97438 * 17 15 14 20 20 C 1.38590 * 119.73155 * 0.02562 * 19 17 15 21 21 C 1.34523 * 124.45198 * 90.00169 * 10 9 7 22 22 O 1.21457 * 125.71419 * 359.94544 * 21 10 9 23 23 H 0.96996 * 119.99472 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47272 * 60.00323 * 9 7 2 25 25 H 1.09000 * 109.47234 * 300.00360 * 9 7 2 26 26 H 1.07999 * 120.13541 * 0.02705 * 14 13 11 27 27 H 1.07996 * 120.13295 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.6960 -4.1922 -1.1078 12 8 2.4271 -3.8797 -2.2503 13 6 3.6194 -5.2724 -0.7040 14 6 4.3987 -6.1867 -1.3946 15 6 5.1775 -7.0960 -0.6929 16 9 5.9422 -7.9845 -1.3647 17 6 5.1795 -7.0946 0.6947 18 9 5.9417 -7.9853 1.3660 19 6 4.4031 -6.1836 1.3967 20 6 3.6213 -5.2709 0.7063 21 6 2.6982 -4.1907 1.1106 22 8 2.4320 -3.8764 2.2532 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5576 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 4.4006 -6.1912 -2.4746 27 1 4.4080 -6.1858 2.4766 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106792538.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:29 Heat of formation + Delta-G solvation = -105.534779 kcal Electronic energy + Delta-G solvation = -19296.983243 eV Core-core repulsion = 15657.116433 eV Total energy + Delta-G solvation = -3639.866810 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.86941 -48.92918 -41.95833 -38.16829 -38.15574 -35.37666 -33.22931 -31.39968 -31.21485 -27.74704 -24.93905 -24.60884 -22.62251 -22.16479 -19.83418 -18.45383 -17.79954 -17.50789 -17.04426 -16.66468 -16.11869 -15.84035 -15.55234 -15.32063 -14.87844 -14.83190 -14.44655 -14.00585 -13.72236 -13.54368 -13.26116 -12.63212 -12.20141 -12.10183 -11.69739 -11.24470 -10.83208 -10.52563 -10.17203 -9.98470 -9.97061 -9.58564 -9.22747 -8.75128 -8.61728 -6.24813 -4.31649 -0.19012 0.42920 1.80784 2.85918 3.08395 3.19889 3.25366 3.28716 3.31457 3.40987 3.68657 3.95170 4.28524 4.29055 4.35667 4.65132 4.90197 5.12006 5.26629 5.34874 5.40202 5.56637 6.16696 6.29273 6.59189 7.04094 7.50016 7.65275 7.66933 7.88261 8.14951 8.69131 9.34314 10.84382 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.031956 B = 0.005065 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.004010 B = 5526.766744 C = 5812.314785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.242 3.758 10 N -0.551 5.551 11 C 0.571 3.429 12 O -0.454 6.454 13 C -0.114 4.114 14 C -0.058 4.058 15 C 0.085 3.915 16 F -0.118 7.118 17 C 0.085 3.915 18 F -0.118 7.118 19 C -0.058 4.058 20 C -0.114 4.114 21 C 0.571 3.429 22 O -0.454 6.454 23 H 0.269 0.731 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.164 0.836 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.920 -14.054 0.005 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.126 3.874 10 N -0.290 5.290 11 C 0.358 3.642 12 O -0.325 6.325 13 C -0.118 4.118 14 C -0.078 4.078 15 C 0.065 3.935 16 F -0.097 7.097 17 C 0.065 3.935 18 F -0.097 7.097 19 C -0.078 4.078 20 C -0.118 4.118 21 C 0.358 3.642 22 O -0.325 6.325 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.182 0.818 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.418 -13.552 0.005 15.953 hybrid contribution 0.786 0.574 -0.001 0.973 sum 9.203 -12.977 0.004 15.909 Atomic orbital electron populations 1.69906 1.06049 1.27792 1.48892 1.24901 0.94986 0.99452 0.94270 0.86420 0.79501 0.81914 0.78889 1.19927 1.20878 1.19921 1.21202 0.93473 0.89994 1.53404 0.92027 1.19757 0.86579 0.80643 1.00378 1.47032 1.42448 1.33442 1.06097 1.17988 0.79936 0.81115 0.85188 1.90789 1.58220 1.64038 1.19435 1.20771 0.99019 0.97799 0.94216 1.20510 0.93424 0.91890 1.01961 1.17582 0.95614 0.92163 0.88176 1.91579 1.72741 1.65466 1.79871 1.17578 0.95659 0.92113 0.88180 1.91577 1.72905 1.65284 1.79891 1.20513 0.93407 0.91907 1.01960 1.20775 0.99003 0.97813 0.94217 1.17989 0.79931 0.81118 0.85191 1.90789 1.58301 1.63967 1.19421 0.92172 0.92511 0.92503 0.81833 0.81833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.59 15 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 15 3 Si 0.91 21.19 29.54 -169.99 -5.02 16.16 15 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.54 -14.89 9.39 -34.44 -0.32 -15.21 15 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 15 9 C 0.24 6.08 5.50 -5.19 -0.03 6.05 15 10 N -0.55 -11.55 2.61 -118.97 -0.31 -11.86 15 11 C 0.57 10.79 8.02 -12.50 -0.10 10.69 15 12 O -0.45 -9.66 17.68 5.40 0.10 -9.57 15 13 C -0.11 -1.63 6.40 -104.84 -0.67 -2.30 15 14 C -0.06 -0.65 10.07 -39.26 -0.40 -1.05 15 15 C 0.09 0.91 7.31 -39.19 -0.29 0.62 15 16 F -0.12 -1.27 17.16 2.25 0.04 -1.23 15 17 C 0.09 0.91 7.31 -39.20 -0.29 0.62 15 18 F -0.12 -1.27 17.16 2.25 0.04 -1.23 15 19 C -0.06 -0.65 10.07 -39.26 -0.40 -1.05 15 20 C -0.11 -1.63 6.40 -104.83 -0.67 -2.30 15 21 C 0.57 10.79 8.02 -12.50 -0.10 10.69 15 22 O -0.45 -9.66 17.68 5.40 0.10 -9.56 15 23 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 24 H 0.06 1.49 7.96 -51.93 -0.41 1.08 15 25 H 0.06 1.49 7.97 -51.93 -0.41 1.08 15 26 H 0.16 1.50 8.06 -52.49 -0.42 1.08 15 27 H 0.16 1.50 8.06 -52.49 -0.42 1.08 15 LS Contribution 268.53 15.07 4.05 4.05 Total: -1.00 -29.93 268.53 -4.85 -34.78 By element: Atomic # 1 Polarization: -4.28 SS G_CDS: -1.22 Total: -5.49 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -3.36 Total: 8.53 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.43 Total: -36.44 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.19 Total: -19.13 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.08 Total: -2.46 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.93 -4.85 -34.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106792538.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.756 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds