Wall clock time and date at job start Mon Mar 30 2020 04:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00279 * 2 1 4 4 H 1.48503 * 109.46884 * 240.00036 * 3 2 1 5 5 H 1.48500 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47240 * 120.00110 * 3 2 1 7 7 C 1.37877 * 119.99512 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00378 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.34518 * 124.45746 * 269.96088 * 10 9 7 12 12 O 1.21458 * 125.70782 * 0.02562 * 11 10 9 13 13 C 1.47729 * 108.58486 * 180.02562 * 11 10 9 14 14 C 1.38575 * 134.24556 * 179.97438 * 13 11 10 15 15 C 1.38767 * 119.73247 * 179.97438 * 14 13 11 16 16 F 1.35106 * 119.80754 * 180.27465 * 15 14 13 17 17 C 1.38755 * 120.38489 * 0.02562 * 15 14 13 18 18 F 1.35098 * 119.80602 * 179.97438 * 17 15 14 19 19 C 1.38764 * 120.38389 * 359.97438 * 17 15 14 20 20 C 1.38590 * 119.73155 * 0.02562 * 19 17 15 21 21 C 1.34523 * 124.45198 * 90.00169 * 10 9 7 22 22 O 1.21457 * 125.71419 * 359.94544 * 21 10 9 23 23 H 0.96996 * 119.99472 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47272 * 60.00323 * 9 7 2 25 25 H 1.09000 * 109.47234 * 300.00360 * 9 7 2 26 26 H 1.07999 * 120.13541 * 0.02705 * 14 13 11 27 27 H 1.07996 * 120.13295 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.6960 -4.1922 -1.1078 12 8 2.4271 -3.8797 -2.2503 13 6 3.6194 -5.2724 -0.7040 14 6 4.3987 -6.1867 -1.3946 15 6 5.1775 -7.0960 -0.6929 16 9 5.9422 -7.9845 -1.3647 17 6 5.1795 -7.0946 0.6947 18 9 5.9417 -7.9853 1.3660 19 6 4.4031 -6.1836 1.3967 20 6 3.6213 -5.2709 0.7063 21 6 2.6982 -4.1907 1.1106 22 8 2.4320 -3.8764 2.2532 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5576 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 4.4006 -6.1912 -2.4746 27 1 4.4080 -6.1858 2.4766 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106792538.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:29 Heat of formation + Delta-G solvation = -124.072503 kcal Electronic energy + Delta-G solvation = -19297.787099 eV Core-core repulsion = 15657.116433 eV Total energy + Delta-G solvation = -3640.670666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.049 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.75967 -49.81474 -43.37328 -39.72125 -39.35195 -37.00394 -35.20383 -32.68703 -32.40070 -29.48765 -26.27416 -26.16768 -24.14499 -23.42151 -21.20162 -19.64647 -19.05910 -18.93094 -18.50850 -17.70551 -17.48033 -17.17629 -17.09790 -16.62879 -16.18755 -15.96798 -15.73178 -15.39199 -15.13290 -14.78832 -14.51883 -14.31428 -13.75216 -13.43558 -13.22849 -13.04297 -12.70260 -12.37936 -12.04852 -11.59710 -11.52362 -10.73298 -10.69264 -10.54474 -10.14102 -8.35722 -6.51302 -1.35394 -0.52523 0.58195 1.33667 1.39893 1.40605 1.50126 1.89655 2.01209 2.08221 2.34185 2.64207 2.96942 2.98012 3.07568 3.25868 3.63025 3.84022 4.31050 4.31129 4.52109 4.55451 4.56854 4.72516 4.94232 5.24355 5.53268 5.79110 5.81957 6.15966 6.47055 6.64315 7.19432 8.73786 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.031956 B = 0.005065 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.004010 B = 5526.766744 C = 5812.314785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.563 4.563 8 H 0.057 0.943 9 C 0.256 3.744 10 N -0.569 5.569 11 C 0.570 3.430 12 O -0.488 6.488 13 C -0.117 4.117 14 C -0.036 4.036 15 C 0.103 3.897 16 F -0.111 7.111 17 C 0.103 3.897 18 F -0.111 7.111 19 C -0.036 4.036 20 C -0.117 4.117 21 C 0.570 3.430 22 O -0.488 6.488 23 H 0.273 0.727 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.188 0.812 27 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.303 -15.363 0.005 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.601 4.601 8 H 0.076 0.924 9 C 0.138 3.862 10 N -0.308 5.308 11 C 0.359 3.641 12 O -0.362 6.362 13 C -0.121 4.121 14 C -0.055 4.055 15 C 0.082 3.918 16 F -0.090 7.090 17 C 0.082 3.918 18 F -0.089 7.089 19 C -0.055 4.055 20 C -0.122 4.122 21 C 0.359 3.641 22 O -0.362 6.362 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.205 0.795 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 10.826 -14.905 0.005 18.421 hybrid contribution 0.091 0.835 -0.001 0.840 sum 10.917 -14.069 0.004 17.808 Atomic orbital electron populations 1.70011 1.07499 1.28924 1.49346 1.25835 0.95912 1.03107 0.93573 0.85381 0.78360 0.77490 0.79158 1.19230 1.19821 1.19220 1.21495 0.93473 0.91339 1.53768 0.92430 1.19186 0.87059 0.81845 0.98156 1.46973 1.42597 1.33191 1.08082 1.18551 0.79854 0.81574 0.84091 1.90756 1.59601 1.65386 1.20445 1.20219 0.99896 0.97941 0.94089 1.20619 0.91634 0.90233 1.03036 1.17464 0.94771 0.91496 0.88047 1.91616 1.72417 1.65121 1.79798 1.17460 0.94813 0.91449 0.88051 1.91613 1.72582 1.64937 1.79818 1.20622 0.91613 0.90252 1.03036 1.20223 0.99888 0.97951 0.94089 1.18551 0.79848 0.81577 0.84095 1.90756 1.59678 1.65316 1.20430 0.91796 0.94718 0.94706 0.79508 0.79508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 13.29 21.45 0.28 -53.54 15 2 C 0.02 0.93 5.46 84.65 0.46 1.39 15 3 Si 0.97 43.71 29.54 68.60 2.03 45.74 15 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 7 C -0.56 -31.97 9.39 25.60 0.24 -31.73 15 8 H 0.06 3.23 7.81 -2.91 -0.02 3.20 15 9 C 0.26 13.59 5.50 85.63 0.47 14.06 15 10 N -0.57 -24.86 2.61 -767.23 -2.00 -26.86 15 11 C 0.57 21.95 8.02 86.79 0.70 22.65 15 12 O -0.49 -21.41 17.68 -3.58 -0.06 -21.47 15 13 C -0.12 -3.19 6.40 -20.00 -0.13 -3.31 15 14 C -0.04 -0.68 10.07 22.48 0.23 -0.46 15 15 C 0.10 1.75 7.31 22.52 0.16 1.92 15 16 F -0.11 -1.88 17.16 44.97 0.77 -1.11 15 17 C 0.10 1.76 7.31 22.52 0.16 1.92 15 18 F -0.11 -1.88 17.16 44.97 0.77 -1.11 15 19 C -0.04 -0.68 10.07 22.48 0.23 -0.46 15 20 C -0.12 -3.19 6.40 -20.00 -0.13 -3.32 15 21 C 0.57 21.95 8.02 86.79 0.70 22.65 15 22 O -0.49 -21.40 17.68 -3.58 -0.06 -21.47 15 23 H 0.27 14.91 8.31 -92.71 -0.77 14.14 15 24 H 0.03 1.96 7.96 -2.38 -0.02 1.94 15 25 H 0.03 1.96 7.97 -2.39 -0.02 1.94 15 26 H 0.19 2.73 8.06 -2.91 -0.02 2.70 15 27 H 0.19 2.73 8.06 -2.91 -0.02 2.70 15 Total: -1.00 -66.90 268.53 6.06 -60.83 By element: Atomic # 1 Polarization: -7.56 SS G_CDS: 1.24 Total: -6.32 kcal Atomic # 6 Polarization: 22.22 SS G_CDS: 3.09 Total: 25.31 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.71 Total: -80.40 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.13 Total: -42.94 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 1.54 Total: -2.22 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -66.90 6.06 -60.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106792538.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.239 kcal (2) G-P(sol) polarization free energy of solvation -66.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds