Wall clock time and date at job start Mon Mar 30 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99996 * 2 1 4 4 C 1.50699 * 109.47601 * 270.00060 * 3 2 1 5 5 H 1.08000 * 119.99164 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00264 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99830 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99726 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47083 * 60.00487 * 8 6 4 10 10 H 1.48508 * 109.46798 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47366 * 299.99822 * 8 6 4 12 12 C 1.34774 * 120.00034 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99937 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00045 * 0.02562 * 12 2 1 15 15 S 1.81403 * 109.47114 * 179.97438 * 14 12 2 16 16 C 1.76197 * 103.00067 * 179.97438 * 15 14 12 17 17 C 1.39393 * 120.10472 * 180.02562 * 16 15 14 18 18 N 1.31895 * 119.88650 * 179.70113 * 17 16 15 19 19 C 1.32295 * 120.09573 * 0.54025 * 18 17 16 20 20 C 1.38166 * 120.20411 * 359.48058 * 19 18 17 21 21 N 1.32248 * 120.11058 * 0.23576 * 20 19 18 22 22 H 1.09000 * 109.47149 * 269.99649 * 1 2 3 23 23 H 1.08993 * 109.47087 * 29.99885 * 1 2 3 24 24 H 1.08996 * 109.46893 * 149.99697 * 1 2 3 25 25 H 1.09004 * 109.47326 * 30.00294 * 3 2 1 26 26 H 1.09000 * 109.47541 * 149.99817 * 3 2 1 27 27 H 0.97005 * 119.99626 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.46978 * 60.00114 * 14 12 2 29 29 H 1.08995 * 109.47452 * 299.99897 * 14 12 2 30 30 H 1.08001 * 120.05571 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.90175 * 179.76640 * 19 18 17 32 32 H 1.07995 * 119.94477 * 180.26003 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0962 -2.2416 6 6 3.1261 2.8781 -1.6727 7 7 3.5525 3.6186 -0.6730 8 14 3.4367 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1334 10 1 4.1794 4.7037 -3.4338 11 1 4.2395 2.3832 -4.1343 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 16 2.5643 -3.8511 -0.0029 16 6 1.5170 -5.2680 -0.0034 17 6 2.0711 -6.5470 -0.0038 18 7 1.2831 -7.6047 0.0017 19 6 -0.0311 -7.4529 -0.0030 20 6 -0.5845 -6.1869 -0.0031 21 7 0.1979 -5.1207 -0.0031 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 1.6085 2.0284 0.5139 26 1 3.1499 1.1385 0.5138 27 1 4.0293 4.4446 -0.8502 28 1 0.7592 -2.5294 -0.8919 29 1 0.7585 -2.5307 0.8880 30 1 3.1439 -6.6717 -0.0043 31 1 -0.6734 -8.3211 -0.0023 32 1 -1.6579 -6.0678 -0.0028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110882700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:41 Heat of formation + Delta-G solvation = 17.692286 kcal Electronic energy + Delta-G solvation = -17080.376007 eV Core-core repulsion = 14167.818956 eV Total energy + Delta-G solvation = -2912.557052 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03115 -39.01502 -34.95898 -34.49531 -32.71276 -31.77298 -30.13070 -27.48023 -25.75788 -25.00405 -24.63581 -22.78256 -19.05279 -17.97553 -17.68567 -17.00554 -16.64008 -16.43112 -15.49366 -15.33379 -14.95661 -14.87947 -14.21918 -13.74874 -13.25002 -12.93995 -12.65944 -12.25596 -12.05304 -11.93249 -11.85839 -11.59169 -11.25307 -10.94498 -10.64532 -10.46586 -10.21816 -10.20198 -9.70649 -9.39381 -9.18098 -8.46956 -7.80653 -7.65962 -6.08266 -4.13578 0.45488 0.85241 1.20611 2.11041 3.19104 3.30366 3.34909 3.38641 3.39171 3.83554 4.03014 4.12980 4.26724 4.41617 4.84518 4.92258 4.96992 5.13195 5.21276 5.26465 5.38393 5.61662 5.85251 5.99436 6.14156 6.90208 6.92611 7.35308 7.42020 7.44617 7.86898 8.16937 8.23354 8.77223 8.93796 9.51579 10.99900 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.037539 B = 0.003850 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.718421 B = 7271.760160 C = 7420.081502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.593 5.593 3 C 0.246 3.754 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.519 3.481 13 O -0.526 6.526 14 C -0.136 4.136 15 S 0.036 5.964 16 C 0.053 3.947 17 C 0.072 3.928 18 N -0.423 5.423 19 C 0.025 3.975 20 C 0.069 3.931 21 N -0.452 5.452 22 H 0.047 0.953 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.265 0.735 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 -17.912 2.416 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.326 5.326 3 C 0.127 3.873 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.303 3.697 13 O -0.404 6.404 14 C -0.288 4.288 15 S 0.277 5.723 16 C -0.198 4.198 17 C -0.097 4.097 18 N -0.137 5.137 19 C -0.137 4.137 20 C -0.094 4.094 21 N -0.171 5.171 22 H 0.066 0.934 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.191 0.809 31 H 0.186 0.814 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.054 -17.497 2.475 19.420 hybrid contribution -1.564 0.313 -1.003 1.885 sum -9.618 -17.183 1.472 19.747 Atomic orbital electron populations 1.21713 0.81067 1.02874 1.00739 1.48080 1.06398 1.07337 1.70755 1.19362 0.92619 0.77578 0.97728 1.21377 1.36935 1.06442 0.92156 0.92440 1.24932 0.95229 0.96303 0.97549 1.69921 1.38168 1.14343 1.30852 0.86538 0.78395 0.77873 0.84512 1.20225 1.21112 1.20093 1.19395 0.87763 0.84090 0.78463 1.90724 1.13197 1.86495 1.49965 1.23819 1.01935 0.95035 1.08030 1.86411 1.05908 0.91284 1.88730 1.24934 0.95459 1.00292 0.99072 1.23374 1.01451 0.86890 0.97977 1.68423 1.05273 1.32465 1.07533 1.23612 0.92195 0.98524 0.99395 1.23749 1.01333 0.89349 0.94968 1.68968 1.03132 1.33293 1.11719 0.93399 0.90383 0.92329 0.94666 0.93612 0.92567 0.86598 0.86741 0.80853 0.81389 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.24 59.85 0.61 1.84 16 2 N -0.59 -12.36 2.86 -182.96 -0.52 -12.89 16 3 C 0.25 6.35 5.16 -5.19 -0.03 6.33 16 4 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.52 10.64 7.69 -10.99 -0.08 10.56 16 13 O -0.53 -13.02 15.44 5.56 0.09 -12.94 16 14 C -0.14 -2.07 4.26 36.01 0.15 -1.92 16 15 S 0.04 0.53 21.06 -107.50 -2.26 -1.74 16 16 C 0.05 0.68 7.00 -16.74 -0.12 0.56 16 17 C 0.07 0.82 10.99 -17.09 -0.19 0.63 16 18 N -0.42 -4.68 10.49 -12.87 -0.13 -4.82 16 19 C 0.03 0.22 11.21 -17.38 -0.19 0.02 16 20 C 0.07 0.62 11.21 -17.40 -0.20 0.42 16 21 N -0.45 -5.44 9.60 -11.91 -0.11 -5.55 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 24 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 25 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 26 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.12 1.62 7.40 -51.93 -0.38 1.24 16 29 H 0.11 1.52 8.11 -51.93 -0.42 1.10 16 30 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 300.17 15.07 4.52 4.52 Total: -1.00 -33.94 300.17 -6.77 -40.71 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -3.60 Total: -3.23 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.46 Total: 4.86 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.04 Total: -48.91 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.26 Total: -1.74 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.94 -6.77 -40.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110882700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.399 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds