Wall clock time and date at job start Mon Mar 30 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99996 * 2 1 4 4 C 1.50699 * 109.47601 * 270.00060 * 3 2 1 5 5 H 1.08000 * 119.99164 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00264 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99830 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99726 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47083 * 60.00487 * 8 6 4 10 10 H 1.48508 * 109.46798 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47366 * 299.99822 * 8 6 4 12 12 C 1.34774 * 120.00034 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99937 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00045 * 0.02562 * 12 2 1 15 15 S 1.81403 * 109.47114 * 179.97438 * 14 12 2 16 16 C 1.76197 * 103.00067 * 179.97438 * 15 14 12 17 17 C 1.39393 * 120.10472 * 180.02562 * 16 15 14 18 18 N 1.31895 * 119.88650 * 179.70113 * 17 16 15 19 19 C 1.32295 * 120.09573 * 0.54025 * 18 17 16 20 20 C 1.38166 * 120.20411 * 359.48058 * 19 18 17 21 21 N 1.32248 * 120.11058 * 0.23576 * 20 19 18 22 22 H 1.09000 * 109.47149 * 269.99649 * 1 2 3 23 23 H 1.08993 * 109.47087 * 29.99885 * 1 2 3 24 24 H 1.08996 * 109.46893 * 149.99697 * 1 2 3 25 25 H 1.09004 * 109.47326 * 30.00294 * 3 2 1 26 26 H 1.09000 * 109.47541 * 149.99817 * 3 2 1 27 27 H 0.97005 * 119.99626 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.46978 * 60.00114 * 14 12 2 29 29 H 1.08995 * 109.47452 * 299.99897 * 14 12 2 30 30 H 1.08001 * 120.05571 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.90175 * 179.76640 * 19 18 17 32 32 H 1.07995 * 119.94477 * 180.26003 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0962 -2.2416 6 6 3.1261 2.8781 -1.6727 7 7 3.5525 3.6186 -0.6730 8 14 3.4367 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1334 10 1 4.1794 4.7037 -3.4338 11 1 4.2395 2.3832 -4.1343 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 16 2.5643 -3.8511 -0.0029 16 6 1.5170 -5.2680 -0.0034 17 6 2.0711 -6.5470 -0.0038 18 7 1.2831 -7.6047 0.0017 19 6 -0.0311 -7.4529 -0.0030 20 6 -0.5845 -6.1869 -0.0031 21 7 0.1979 -5.1207 -0.0031 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 1.6085 2.0284 0.5139 26 1 3.1499 1.1385 0.5138 27 1 4.0293 4.4446 -0.8502 28 1 0.7592 -2.5294 -0.8919 29 1 0.7585 -2.5307 0.8880 30 1 3.1439 -6.6717 -0.0043 31 1 -0.6734 -8.3211 -0.0023 32 1 -1.6579 -6.0678 -0.0028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110882700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:41 Heat of formation + Delta-G solvation = -6.458882 kcal Electronic energy + Delta-G solvation = -17081.423281 eV Core-core repulsion = 14167.818956 eV Total energy + Delta-G solvation = -2913.604325 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.82178 -40.67200 -36.70382 -35.31609 -34.78599 -32.53950 -31.67184 -29.23544 -27.32141 -25.79815 -25.50754 -24.71023 -20.51807 -19.05514 -18.72786 -18.54712 -17.99372 -17.75305 -17.05991 -16.76825 -16.23877 -15.89920 -15.73402 -14.75733 -14.70680 -14.37321 -13.94971 -13.68900 -13.61076 -13.46839 -13.14124 -12.82418 -12.69712 -12.55459 -12.44858 -12.21185 -11.75375 -11.57646 -11.03158 -10.87081 -10.65308 -10.18879 -9.52611 -8.73684 -8.24152 -6.39082 -0.31842 0.06336 0.13096 1.05507 1.36700 1.41155 1.48117 1.62425 2.25401 2.41521 2.62905 3.05951 3.33236 3.36678 3.47114 3.55943 3.96202 4.18811 4.21316 4.30824 4.41723 4.54889 4.68210 4.91848 4.96452 5.19304 5.31687 5.50586 5.76923 6.02564 6.12801 6.57219 6.67623 6.70161 7.18638 7.34811 8.83033 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.037539 B = 0.003850 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.718421 B = 7271.760160 C = 7420.081502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.601 5.601 3 C 0.260 3.740 4 C -0.547 4.547 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.510 3.490 13 O -0.580 6.580 14 C -0.112 4.112 15 S -0.012 6.012 16 C 0.043 3.957 17 C 0.065 3.935 18 N -0.442 5.442 19 C 0.039 3.961 20 C 0.072 3.928 21 N -0.468 5.468 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.029 0.971 26 H 0.001 0.999 27 H 0.268 0.732 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.182 0.818 31 H 0.210 0.790 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 -19.735 1.511 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.332 5.332 3 C 0.139 3.861 4 C -0.585 4.585 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.297 3.703 13 O -0.461 6.461 14 C -0.263 4.263 15 S 0.228 5.772 16 C -0.207 4.207 17 C -0.102 4.102 18 N -0.157 5.157 19 C -0.123 4.123 20 C -0.092 4.092 21 N -0.187 5.187 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.047 0.953 26 H 0.019 0.981 27 H 0.077 0.923 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.199 0.801 31 H 0.226 0.774 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -10.804 -19.333 1.575 22.203 hybrid contribution -0.863 0.712 -0.666 1.303 sum -11.667 -18.621 0.909 21.993 Atomic orbital electron populations 1.22015 0.77449 1.04260 1.02976 1.48074 1.08627 1.05924 1.70575 1.18827 0.91236 0.79858 0.96223 1.21672 1.37187 1.06687 0.92986 0.92750 1.25851 0.94807 0.96365 1.02012 1.70040 1.38756 1.14794 1.33110 0.85471 0.78884 0.77370 0.79121 1.18383 1.20296 1.20367 1.20232 0.87487 0.85595 0.76999 1.90692 1.15795 1.87522 1.52073 1.23533 1.01169 0.91833 1.09806 1.86561 1.07599 0.92787 1.90241 1.24537 0.95748 0.99053 1.01364 1.23502 1.02189 0.86607 0.97881 1.68517 1.06606 1.32145 1.08392 1.24373 0.91679 1.00040 0.96250 1.24454 1.02865 0.88592 0.93331 1.68899 1.02917 1.34943 1.11928 0.90681 0.90982 0.88953 0.95278 0.98105 0.92310 0.84904 0.84410 0.80107 0.77368 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.16 10.24 127.77 1.31 3.47 16 2 N -0.60 -25.23 2.86 -851.14 -2.43 -27.66 16 3 C 0.26 13.95 5.16 85.63 0.44 14.39 16 4 C -0.55 -31.46 9.39 25.60 0.24 -31.22 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.51 5.46 84.65 0.46 0.97 16 7 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 8 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 9 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 C 0.51 21.26 7.69 87.66 0.67 21.94 16 13 O -0.58 -30.09 15.44 -3.03 -0.05 -30.14 16 14 C -0.11 -3.30 4.26 71.24 0.30 -2.99 16 15 S -0.01 -0.35 21.06 -56.49 -1.19 -1.54 16 16 C 0.04 1.03 7.00 84.84 0.59 1.63 16 17 C 0.06 1.40 10.99 84.96 0.93 2.34 16 18 N -0.44 -8.72 10.49 -194.62 -2.04 -10.76 16 19 C 0.04 0.52 11.21 84.61 0.95 1.47 16 20 C 0.07 0.98 11.21 84.61 0.95 1.93 16 21 N -0.47 -9.96 9.60 -191.59 -1.84 -11.80 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 24 H 0.09 2.03 6.44 -2.39 -0.02 2.02 16 25 H 0.03 1.57 8.07 -2.38 -0.02 1.55 16 26 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 27 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 28 H 0.13 3.42 7.40 -2.39 -0.02 3.41 16 29 H 0.14 3.36 8.11 -2.39 -0.02 3.34 16 30 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -77.05 300.17 2.75 -74.30 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.13 Total: 2.58 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.86 Total: 13.92 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -6.03 Total: -105.97 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.05 Total: -30.14 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.19 Total: -1.54 kcal Total: -77.05 2.75 -74.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110882700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.844 kcal (2) G-P(sol) polarization free energy of solvation -77.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds