Wall clock time and date at job start Mon Mar 30 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.50699 * 109.47352 * 269.99857 * 3 2 1 5 5 H 1.08000 * 119.99828 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00146 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99841 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47166 * 60.00152 * 8 6 4 10 10 H 1.48506 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47159 * 299.99829 * 8 6 4 12 12 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00360 * 179.72577 * 12 2 1 14 14 C 1.50706 * 120.00081 * 359.97438 * 12 2 1 15 15 S 1.80996 * 109.47276 * 179.72626 * 14 12 2 16 16 C 1.76195 * 99.99998 * 179.97438 * 15 14 12 17 17 C 1.39739 * 120.54242 * 179.97438 * 16 15 14 18 18 C 1.38033 * 118.33162 * 180.02562 * 17 16 15 19 19 N 1.32608 * 119.21160 * 0.02562 * 18 17 16 20 20 C 1.31771 * 121.02205 * 359.97438 * 19 18 17 21 21 N 1.31767 * 121.84056 * 359.71799 * 20 19 18 22 22 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 23 23 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 24 24 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 25 25 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 26 26 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 27 27 H 0.97007 * 120.00044 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46564 * 299.73030 * 14 12 2 29 29 H 1.08998 * 109.47012 * 59.72084 * 14 12 2 30 30 H 1.08006 * 120.82898 * 0.02709 * 17 16 15 31 31 H 1.08008 * 120.39538 * 180.02562 * 18 17 16 32 32 H 1.07998 * 119.08211 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5531 3.6182 -0.6730 8 14 3.4366 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1336 10 1 4.1792 4.7038 -3.4337 11 1 4.2395 2.3832 -4.1342 12 6 2.1388 -1.1671 -0.0005 13 8 3.3516 -1.1672 -0.0055 14 6 1.3854 -2.4723 -0.0005 15 16 2.5615 -3.8480 -0.0094 16 6 1.4415 -5.2082 -0.0071 17 6 1.9192 -6.5214 -0.0131 18 6 1.0013 -7.5523 -0.0115 19 7 -0.2935 -7.2660 -0.0050 20 6 -0.7127 -6.0168 0.0004 21 7 0.1273 -5.0016 0.0052 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5139 26 1 3.1498 1.1385 0.5139 27 1 4.0293 4.4445 -0.8502 28 1 0.7627 -2.5323 0.8921 29 1 0.7546 -2.5277 -0.8877 30 1 2.9800 -6.7245 -0.0187 31 1 1.3337 -8.5800 -0.0155 32 1 -1.7745 -5.8194 0.0060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110892499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:39 Heat of formation + Delta-G solvation = 17.920355 kcal Electronic energy + Delta-G solvation = -17116.474324 eV Core-core repulsion = 14203.927162 eV Total energy + Delta-G solvation = -2912.547162 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.93104 -39.01881 -34.96071 -33.91973 -32.70935 -32.26412 -30.13838 -27.48587 -25.76082 -24.93046 -24.53129 -22.77685 -19.22142 -18.22533 -17.62296 -16.64642 -16.44392 -15.88981 -15.62603 -15.35814 -15.04650 -14.87150 -14.22315 -13.85046 -13.32628 -13.23107 -12.61619 -12.25335 -12.05561 -11.91715 -11.30508 -11.27670 -11.21325 -10.94199 -10.68984 -10.53595 -10.21268 -10.20463 -9.70691 -9.48126 -9.17431 -8.47062 -7.87847 -7.74076 -6.08335 -4.13654 0.62520 0.77343 1.25362 2.01628 3.19003 3.30267 3.34742 3.38469 3.50560 3.83715 3.95787 4.09582 4.41496 4.51137 4.84666 4.91728 5.14891 5.20328 5.26373 5.32955 5.41768 5.63665 5.86609 6.05696 6.15495 6.63109 6.92681 7.35162 7.42027 7.79650 7.86810 8.16895 8.23503 8.76996 8.93687 9.51505 10.99826 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.037299 B = 0.003888 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.519657 B = 7199.813174 C = 7341.623898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.593 5.593 3 C 0.246 3.754 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.517 3.483 13 O -0.528 6.528 14 C -0.139 4.139 15 S 0.045 5.955 16 C 0.143 3.857 17 C -0.212 4.212 18 C 0.159 3.841 19 N -0.536 5.536 20 C 0.310 3.690 21 N -0.530 5.530 22 H 0.048 0.952 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.265 0.735 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 -18.193 2.408 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.325 5.325 3 C 0.127 3.873 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.301 3.699 13 O -0.406 6.406 14 C -0.291 4.291 15 S 0.285 5.715 16 C -0.114 4.114 17 C -0.241 4.241 18 C -0.006 4.006 19 N -0.253 5.253 20 C 0.018 3.982 21 N -0.250 5.250 22 H 0.066 0.934 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.169 0.831 31 H 0.187 0.813 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.013 -17.638 2.464 19.140 hybrid contribution -0.548 0.203 -0.996 1.155 sum -7.561 -17.434 1.468 19.060 Atomic orbital electron populations 1.21719 0.81008 1.02911 1.00768 1.48077 1.06433 1.07345 1.70653 1.19362 0.92606 0.77610 0.97725 1.21375 1.36913 1.06441 0.92155 0.92439 1.24931 0.95228 0.96311 0.97547 1.69921 1.38188 1.14336 1.30852 0.86539 0.78401 0.77865 0.84514 1.20212 1.21112 1.20111 1.19459 0.87769 0.84206 0.78428 1.90721 1.13236 1.86517 1.50130 1.23852 1.01859 0.95015 1.08386 1.86612 1.04893 0.91933 1.88034 1.24305 0.95134 0.98601 0.93313 1.22454 1.02992 0.92606 1.06043 1.23076 0.88160 0.99920 0.89448 1.68467 1.17649 1.23253 1.15934 1.24963 1.00418 0.83366 0.89434 1.68920 1.02064 1.36768 1.17205 0.93382 0.90398 0.92240 0.94662 0.93644 0.92571 0.86497 0.86364 0.83123 0.81271 0.78696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.25 59.84 0.61 1.84 16 2 N -0.59 -12.37 2.86 -182.95 -0.52 -12.89 16 3 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 4 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 C 0.52 10.61 7.69 -10.98 -0.08 10.52 16 13 O -0.53 -13.06 15.44 5.56 0.09 -12.98 16 14 C -0.14 -2.12 3.91 36.01 0.14 -1.98 16 15 S 0.05 0.66 21.23 -107.50 -2.28 -1.62 16 16 C 0.14 1.79 7.01 -16.47 -0.12 1.67 16 17 C -0.21 -2.11 9.95 -39.10 -0.39 -2.50 16 18 C 0.16 1.42 11.29 -17.29 -0.20 1.23 16 19 N -0.54 -5.69 10.43 -14.67 -0.15 -5.85 16 20 C 0.31 3.24 12.28 -92.20 -1.13 2.11 16 21 N -0.53 -6.52 9.31 -13.36 -0.12 -6.64 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 24 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 25 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 26 H 0.05 1.32 7.43 -51.93 -0.39 0.94 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.12 1.57 8.11 -51.92 -0.42 1.14 16 29 H 0.12 1.66 7.38 -51.92 -0.38 1.28 16 30 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.17 0.90 8.06 -52.48 -0.42 0.47 16 32 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -33.80 299.72 -7.97 -41.77 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -3.60 Total: -3.02 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -1.61 Total: 5.65 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.06 Total: -51.04 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.28 Total: -1.62 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.80 -7.97 -41.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110892499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.690 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds