Wall clock time and date at job start Mon Mar 30 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.50699 * 109.47352 * 269.99857 * 3 2 1 5 5 H 1.08000 * 119.99828 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00146 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99841 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47166 * 60.00152 * 8 6 4 10 10 H 1.48506 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47159 * 299.99829 * 8 6 4 12 12 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00360 * 179.72577 * 12 2 1 14 14 C 1.50706 * 120.00081 * 359.97438 * 12 2 1 15 15 S 1.80996 * 109.47276 * 179.72626 * 14 12 2 16 16 C 1.76195 * 99.99998 * 179.97438 * 15 14 12 17 17 C 1.39739 * 120.54242 * 179.97438 * 16 15 14 18 18 C 1.38033 * 118.33162 * 180.02562 * 17 16 15 19 19 N 1.32608 * 119.21160 * 0.02562 * 18 17 16 20 20 C 1.31771 * 121.02205 * 359.97438 * 19 18 17 21 21 N 1.31767 * 121.84056 * 359.71799 * 20 19 18 22 22 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 23 23 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 24 24 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 25 25 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 26 26 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 27 27 H 0.97007 * 120.00044 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46564 * 299.73030 * 14 12 2 29 29 H 1.08998 * 109.47012 * 59.72084 * 14 12 2 30 30 H 1.08006 * 120.82898 * 0.02709 * 17 16 15 31 31 H 1.08008 * 120.39538 * 180.02562 * 18 17 16 32 32 H 1.07998 * 119.08211 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5531 3.6182 -0.6730 8 14 3.4366 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1336 10 1 4.1792 4.7038 -3.4337 11 1 4.2395 2.3832 -4.1342 12 6 2.1388 -1.1671 -0.0005 13 8 3.3516 -1.1672 -0.0055 14 6 1.3854 -2.4723 -0.0005 15 16 2.5615 -3.8480 -0.0094 16 6 1.4415 -5.2082 -0.0071 17 6 1.9192 -6.5214 -0.0131 18 6 1.0013 -7.5523 -0.0115 19 7 -0.2935 -7.2660 -0.0050 20 6 -0.7127 -6.0168 0.0004 21 7 0.1273 -5.0016 0.0052 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5139 26 1 3.1498 1.1385 0.5139 27 1 4.0293 4.4445 -0.8502 28 1 0.7627 -2.5323 0.8921 29 1 0.7546 -2.5277 -0.8877 30 1 2.9800 -6.7245 -0.0187 31 1 1.3337 -8.5800 -0.0155 32 1 -1.7745 -5.8194 0.0060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110892499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:39 Heat of formation + Delta-G solvation = -4.247045 kcal Electronic energy + Delta-G solvation = -17117.435574 eV Core-core repulsion = 14203.927162 eV Total energy + Delta-G solvation = -2913.508412 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.72558 -40.68139 -36.71078 -34.84169 -34.68888 -33.03868 -31.67909 -29.24851 -27.32605 -25.79090 -25.36560 -24.69486 -20.57876 -19.37257 -18.73213 -18.46307 -18.00331 -17.20587 -16.77734 -16.63464 -16.34486 -15.92861 -15.82875 -14.72083 -14.62253 -14.58934 -14.13650 -13.84732 -13.62334 -13.47806 -13.15168 -12.82502 -12.56241 -12.21540 -12.17961 -12.05371 -11.75732 -11.66809 -10.99799 -10.88130 -10.65559 -10.29073 -9.53258 -8.90359 -8.24388 -6.39359 -0.20512 0.02695 0.18760 0.93587 1.36586 1.40894 1.47924 1.61634 2.25187 2.41259 2.72925 3.05694 3.27332 3.32411 3.53509 3.75068 3.96748 4.15665 4.22339 4.42313 4.51292 4.67011 4.68266 4.91934 4.96264 5.18749 5.34678 5.50230 5.76498 5.83985 6.02234 6.56715 6.69828 7.01324 7.17881 7.34363 8.82813 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.037299 B = 0.003888 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.519657 B = 7199.813174 C = 7341.623898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.260 3.740 4 C -0.547 4.547 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.509 3.491 13 O -0.581 6.581 14 C -0.116 4.116 15 S 0.002 5.998 16 C 0.132 3.868 17 C -0.209 4.209 18 C 0.166 3.834 19 N -0.546 5.546 20 C 0.303 3.697 21 N -0.545 5.545 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.029 0.971 26 H 0.001 0.999 27 H 0.268 0.732 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.170 0.830 31 H 0.209 0.791 32 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 -20.122 1.502 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.138 3.862 4 C -0.585 4.585 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.296 3.704 13 O -0.462 6.462 14 C -0.267 4.267 15 S 0.241 5.759 16 C -0.124 4.124 17 C -0.238 4.238 18 C 0.000 4.000 19 N -0.262 5.262 20 C 0.013 3.987 21 N -0.265 5.265 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.047 0.953 26 H 0.019 0.981 27 H 0.077 0.923 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.187 0.813 31 H 0.225 0.775 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.811 -19.582 1.563 21.529 hybrid contribution -0.063 0.667 -0.659 0.940 sum -8.874 -18.914 0.904 20.912 Atomic orbital electron populations 1.22014 0.77447 1.04257 1.02975 1.48074 1.08628 1.05962 1.70482 1.18830 0.91224 0.79869 0.96234 1.21666 1.37185 1.06703 0.92972 0.92766 1.25850 0.94795 0.96362 1.02017 1.70040 1.38762 1.14785 1.33113 0.85471 0.78878 0.77380 0.79111 1.18416 1.20279 1.20343 1.20293 0.87496 0.85685 0.76972 1.90689 1.15779 1.87536 1.52211 1.23582 1.01177 0.91941 1.10028 1.86743 1.06406 0.93212 1.89491 1.24105 0.95125 0.98237 0.94962 1.22750 1.04388 0.91679 1.05029 1.23733 0.87351 1.01369 0.87519 1.68560 1.18523 1.23268 1.15872 1.25539 1.01419 0.83042 0.88745 1.68866 1.02085 1.37722 1.17782 0.90694 0.90991 0.88951 0.95300 0.98093 0.92305 0.84333 0.84813 0.81262 0.77456 0.76001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.18 10.25 127.77 1.31 3.49 16 2 N -0.60 -25.27 2.86 -851.13 -2.43 -27.70 16 3 C 0.26 13.95 5.16 85.63 0.44 14.39 16 4 C -0.55 -31.46 9.39 25.60 0.24 -31.21 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.52 5.46 84.65 0.46 0.98 16 7 N -0.93 -55.99 13.29 21.44 0.28 -55.71 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 9 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 C 0.51 21.17 7.69 87.66 0.67 21.85 16 13 O -0.58 -30.00 15.44 -3.04 -0.05 -30.04 16 14 C -0.12 -3.42 3.91 71.24 0.28 -3.14 16 15 S 0.00 0.06 21.23 -56.49 -1.20 -1.14 16 16 C 0.13 3.07 7.01 84.87 0.59 3.67 16 17 C -0.21 -3.66 9.95 22.58 0.22 -3.43 16 18 C 0.17 2.40 11.29 84.53 0.95 3.36 16 19 N -0.55 -9.88 10.43 -200.34 -2.09 -11.97 16 20 C 0.30 5.50 12.28 180.90 2.22 7.72 16 21 N -0.55 -12.14 9.31 -196.17 -1.83 -13.97 16 22 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 24 H 0.09 2.08 6.43 -2.38 -0.02 2.06 16 25 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 26 H 0.00 0.06 7.43 -2.39 -0.02 0.04 16 27 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 28 H 0.14 3.44 8.11 -2.39 -0.02 3.42 16 29 H 0.13 3.50 7.38 -2.40 -0.02 3.48 16 30 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.22 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -75.87 299.72 3.25 -72.63 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.13 Total: 3.43 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 7.40 Total: 17.67 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -6.06 Total: -109.35 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.05 Total: -30.04 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -1.20 Total: -1.14 kcal Total: -75.87 3.25 -72.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110892499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.378 kcal (2) G-P(sol) polarization free energy of solvation -75.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds