Wall clock time and date at job start Mon Mar 30 2020 04:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39759 * 120.05793 * 356.80158 * 3 2 1 5 5 C 1.37792 * 120.04772 * 180.02562 * 4 3 2 6 6 C 1.38940 * 120.15746 * 359.97438 * 5 4 3 7 7 N 1.39484 * 119.94717 * 179.97438 * 6 5 4 8 8 S 1.65598 * 120.00339 * 327.42763 * 7 6 5 9 9 O 1.42098 * 106.40155 * 314.16797 * 8 7 6 10 10 O 1.42094 * 106.40562 * 181.24574 * 8 7 6 11 11 C 1.76203 * 107.21911 * 67.70293 * 8 7 6 12 12 H 1.08001 * 119.99850 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00356 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99830 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00330 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46843 * 60.00001 * 15 13 11 17 17 H 1.48500 * 109.47166 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46852 * 300.00387 * 15 13 11 19 19 C 1.39726 * 120.10523 * 0.27498 * 6 5 4 20 20 N 1.40029 * 120.02141 * 179.70541 * 19 6 5 21 21 C 1.38229 * 119.95075 * 359.46997 * 19 6 5 22 22 H 1.08000 * 119.97503 * 0.02698 * 4 3 2 23 23 H 1.08006 * 119.92465 * 179.97438 * 5 4 3 24 24 H 0.97004 * 120.00243 * 147.42418 * 7 6 5 25 25 H 0.96999 * 120.00135 * 179.97438 * 14 13 11 26 26 H 0.97003 * 120.00030 * 359.97438 * 20 19 6 27 27 H 0.96994 * 120.00213 * 179.97438 * 20 19 6 28 28 H 1.08003 * 120.07500 * 180.25523 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 -1.2068 0.0675 5 6 4.6465 -1.2059 0.0680 6 6 5.3437 -0.0060 0.0010 7 7 6.7385 -0.0102 0.0023 8 16 7.5623 -1.1758 0.8419 9 8 6.9389 -1.2691 2.1155 10 8 8.9442 -0.8918 0.6720 11 6 7.2663 -2.7112 0.0296 12 1 6.6402 -2.7449 -0.8497 13 6 7.8341 -3.8695 0.5164 14 7 8.5962 -3.8285 1.5874 15 14 7.5209 -5.4970 -0.3453 16 1 8.0105 -5.4182 -1.7450 17 1 8.2387 -6.5822 0.3705 18 1 6.0639 -5.7843 -0.3460 19 6 4.6499 1.2052 -0.0615 20 7 5.3544 2.4138 -0.1227 21 6 3.2676 1.2092 -0.0676 22 1 2.7295 -2.1412 0.1193 23 1 5.1858 -2.1402 0.1206 24 1 7.2261 0.6697 -0.4886 25 1 8.9953 -4.6434 1.9302 26 1 6.3244 2.4104 -0.1215 27 1 4.8725 3.2544 -0.1664 28 1 2.7293 2.1441 -0.1200 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116562415.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:00 Heat of formation + Delta-G solvation = -61.349793 kcal Electronic energy + Delta-G solvation = -17689.733148 eV Core-core repulsion = 14637.915480 eV Total energy + Delta-G solvation = -3051.817668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79998 -37.84619 -37.45327 -36.21513 -35.77657 -35.21759 -35.14035 -30.85683 -29.35825 -28.31968 -24.50605 -23.48982 -20.99419 -19.77470 -19.64018 -18.97593 -18.20106 -17.55784 -16.88695 -16.28610 -15.99430 -15.72152 -15.41302 -15.05332 -14.72861 -14.55775 -14.15086 -13.93391 -13.73245 -13.45197 -13.07175 -12.92756 -12.74833 -12.56501 -12.49142 -12.31441 -12.25207 -11.69172 -11.47040 -11.17815 -10.87555 -9.44761 -8.75053 -8.26619 -7.46746 -0.14071 0.20799 0.60829 1.41292 1.42211 1.55090 1.68611 2.02119 2.23582 2.60743 2.77034 2.82294 3.00938 3.19742 3.65851 3.93009 4.16682 4.25805 4.38598 4.60551 4.75212 5.06208 5.20970 5.28742 5.35539 5.47855 5.78488 5.91406 6.18165 6.52258 6.59342 6.79759 7.05219 8.22119 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.007157 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.873751 B = 3911.058327 C = 4894.896264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.292 3.708 3 C -0.020 4.020 4 C -0.086 4.086 5 C -0.155 4.155 6 C 0.126 3.874 7 N -1.051 6.051 8 S 2.712 3.288 9 O -1.024 7.024 10 O -1.035 7.035 11 C -1.034 5.034 12 H 0.133 0.867 13 C 0.077 3.923 14 N -0.891 5.891 15 Si 0.986 3.014 16 H -0.252 1.252 17 H -0.270 1.270 18 H -0.244 1.244 19 C 0.187 3.813 20 N -0.866 5.866 21 C -0.116 4.116 22 H 0.148 0.852 23 H 0.148 0.852 24 H 0.423 0.577 25 H 0.300 0.700 26 H 0.401 0.599 27 H 0.415 0.585 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 7.924 -6.389 12.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.022 4.022 3 C -0.025 4.025 4 C -0.109 4.109 5 C -0.177 4.177 6 C 0.024 3.976 7 N -0.799 5.799 8 S 2.814 3.186 9 O -1.014 7.014 10 O -1.026 7.026 11 C -1.168 5.168 12 H 0.151 0.849 13 C -0.137 4.137 14 N -0.522 5.522 15 Si 0.804 3.196 16 H -0.176 1.176 17 H -0.194 1.194 18 H -0.168 1.168 19 C 0.078 3.922 20 N -0.409 5.409 21 C -0.142 4.142 22 H 0.166 0.834 23 H 0.165 0.835 24 H 0.260 0.740 25 H 0.110 0.890 26 H 0.230 0.770 27 H 0.247 0.753 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.955 7.913 -5.353 12.432 hybrid contribution 1.008 -0.557 -0.681 1.338 sum -6.946 7.356 -6.034 11.780 Atomic orbital electron populations 1.81236 1.12976 1.08952 1.11139 1.25637 0.92371 0.92197 0.92042 1.15653 0.83366 0.94662 1.08847 1.20829 0.92346 0.97655 1.00027 1.21606 0.95675 0.98091 1.02300 1.17398 0.82079 0.93736 1.04425 1.53335 1.12370 1.47338 1.66846 1.00391 0.70924 0.74302 0.73005 1.93361 1.77647 1.87620 1.42726 1.93339 1.35274 1.86619 1.87321 1.30857 1.44396 1.13263 1.28272 0.84934 1.25921 0.89496 1.05055 0.93204 1.69972 1.27187 1.33745 1.21264 0.85210 0.80602 0.74658 0.79135 1.17568 1.19435 1.16757 1.17316 0.91122 0.85663 0.98066 1.42260 1.09161 1.04440 1.85033 1.20511 0.90726 0.97959 1.05006 0.83410 0.83501 0.74039 0.89028 0.77005 0.75306 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.51 18.54 19.00 0.35 -13.15 15 2 C 0.29 7.36 15.32 88.33 1.35 8.72 15 3 C -0.02 -0.48 5.74 -21.29 -0.12 -0.60 15 4 C -0.09 -2.34 9.74 22.53 0.22 -2.12 15 5 C -0.15 -5.22 8.88 22.33 0.20 -5.02 15 6 C 0.13 4.06 6.22 38.45 0.24 4.30 15 7 N -1.05 -37.16 5.50 -50.97 -0.28 -37.44 15 8 S 2.71 134.24 4.62 -56.49 -0.26 133.97 15 9 O -1.02 -57.12 17.42 -128.00 -2.23 -59.35 15 10 O -1.04 -57.58 18.02 -128.00 -2.31 -59.89 15 11 C -1.03 -51.61 7.56 67.73 0.51 -51.10 15 12 H 0.13 5.80 6.90 -2.91 -0.02 5.78 15 13 C 0.08 3.98 5.46 84.65 0.46 4.44 15 14 N -0.89 -50.15 13.19 21.45 0.28 -49.87 15 15 Si 0.99 38.30 29.54 68.60 2.03 40.33 15 16 H -0.25 -9.26 7.11 99.48 0.71 -8.55 15 17 H -0.27 -10.10 7.11 99.48 0.71 -9.39 15 18 H -0.24 -8.77 7.11 99.48 0.71 -8.06 15 19 C 0.19 4.55 6.77 38.19 0.26 4.80 15 20 N -0.87 -15.03 9.07 -51.06 -0.46 -15.49 15 21 C -0.12 -2.43 9.59 22.65 0.22 -2.21 15 22 H 0.15 3.47 8.06 -2.91 -0.02 3.44 15 23 H 0.15 5.64 4.45 -2.91 -0.01 5.63 15 24 H 0.42 11.93 7.73 -96.75 -0.75 11.18 15 25 H 0.30 15.25 8.31 -92.71 -0.77 14.48 15 26 H 0.40 6.80 7.38 -92.71 -0.68 6.12 15 27 H 0.42 4.49 8.84 -92.71 -0.82 3.67 15 28 H 0.16 2.31 8.06 -2.91 -0.02 2.28 15 Total: -1.00 -72.58 272.24 -0.52 -73.11 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.98 Total: 26.58 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 3.34 Total: -38.79 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -0.11 Total: -115.95 kcal Atomic # 8 Polarization: -114.70 SS G_CDS: -4.54 Total: -119.24 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 16 Polarization: 134.24 SS G_CDS: -0.26 Total: 133.97 kcal Total: -72.58 -0.52 -73.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116562415.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.756 kcal (2) G-P(sol) polarization free energy of solvation -72.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds