Wall clock time and date at job start Mon Mar 30 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86806 * 119.99713 * 2 1 4 4 H 1.48494 * 109.47073 * 239.99784 * 3 2 1 5 5 H 1.48503 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46643 * 119.99753 * 3 2 1 7 7 C 1.40130 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.41801 * 119.99891 * 0.02562 * 7 2 1 10 10 O 1.21778 * 120.00217 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00140 * 179.97438 * 9 7 2 12 12 C 1.39560 * 120.00327 * 185.52305 * 11 9 7 13 13 C 1.38740 * 119.95229 * 24.89705 * 12 11 9 14 14 C 1.38183 * 120.24250 * 180.02562 * 13 12 11 15 15 Cl 1.73599 * 120.08825 * 179.79046 * 14 13 12 16 16 C 1.38612 * 119.82998 * 359.81520 * 14 13 12 17 17 C 1.37841 * 120.14521 * 359.97375 * 16 14 13 18 18 C 1.38706 * 120.84778 * 0.36130 * 17 16 14 19 19 O 1.36427 * 111.36398 * 179.11652 * 18 17 16 20 20 C 1.43769 * 109.08003 * 18.71225 * 19 18 17 21 21 C 1.51663 * 132.10321 * 180.37660 * 17 16 14 22 22 H 0.97001 * 120.00212 * 359.97438 * 1 2 3 23 23 H 0.96994 * 119.99722 * 5.53283 * 11 9 7 24 24 H 1.07997 * 119.88338 * 0.02562 * 13 12 11 25 25 H 1.08001 * 119.92493 * 179.97438 * 16 14 13 26 26 H 1.08993 * 110.75834 * 214.13331 * 20 19 18 27 27 H 1.09003 * 110.75560 * 90.95355 * 20 19 18 28 28 H 1.09003 * 110.93483 * 46.43667 * 21 17 16 29 29 H 1.08998 * 110.97141 * 282.76663 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2752 2.7465 0.0006 6 1 3.0939 1.6965 1.2126 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2981 -2.4416 -0.0016 10 8 0.0803 -2.4417 -0.0026 11 7 1.9720 -3.6088 -0.0027 12 6 1.2791 -4.8146 -0.1201 13 6 0.0353 -4.8418 -0.7340 14 6 -0.6562 -6.0322 -0.8530 15 17 -2.2148 -6.0608 -1.6172 16 6 -0.1025 -7.2035 -0.3603 17 6 1.1349 -7.1823 0.2466 18 6 1.8408 -5.9960 0.3814 19 8 3.0274 -6.1940 1.0248 20 6 3.3662 -7.5900 0.9669 21 6 1.9842 -8.2775 0.8627 22 1 -0.4850 0.8400 0.0004 23 1 2.9385 -3.6108 0.0783 24 1 -0.3942 -3.9293 -1.1204 25 1 -0.6418 -8.1347 -0.4521 26 1 3.8842 -7.8998 1.8744 27 1 3.9716 -7.8043 0.0862 28 1 2.0308 -9.1485 0.2090 29 1 1.6107 -8.5526 1.8490 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125508687.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:16 Heat of formation + Delta-G solvation = -48.713865 kcal Electronic energy + Delta-G solvation = -17609.081401 eV Core-core repulsion = 14523.475211 eV Total energy + Delta-G solvation = -3085.606190 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.79116 -38.34049 -36.87057 -35.61042 -33.77864 -32.53564 -31.50631 -28.94171 -28.68062 -26.42415 -23.33100 -21.87407 -21.82902 -19.68023 -17.86807 -17.00981 -16.53735 -16.07423 -15.61370 -15.39072 -14.66231 -14.16149 -13.61754 -13.33145 -12.99808 -12.64502 -12.56272 -12.32110 -11.92975 -11.65500 -11.55256 -11.43482 -11.16262 -11.08968 -10.66578 -10.48725 -10.39894 -10.17537 -9.43634 -8.92797 -7.99666 -7.64443 -6.98863 -6.40371 -4.94107 1.60911 1.76066 2.56865 3.06118 3.11591 3.13533 3.54410 3.93432 3.97418 4.41484 4.50180 4.57917 4.80784 5.02975 5.28023 5.45972 5.52088 5.65250 5.74832 5.82973 6.01598 6.14152 6.36300 6.57452 6.75261 7.10452 7.21411 7.31230 7.79087 7.97778 8.09948 8.76490 9.20989 10.33074 10.52058 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.006207 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.778426 B = 4509.661919 C = 5814.573088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.088 3.912 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.540 3.460 10 O -0.564 6.564 11 N -0.689 5.689 12 C 0.202 3.798 13 C -0.106 4.106 14 C -0.032 4.032 15 Cl -0.078 7.078 16 C -0.116 4.116 17 C -0.144 4.144 18 C 0.038 3.962 19 O -0.301 6.301 20 C 0.051 3.949 21 C -0.103 4.103 22 H 0.274 0.726 23 H 0.397 0.603 24 H 0.173 0.827 25 H 0.124 0.876 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 -12.935 -0.408 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.089 0.911 9 C 0.350 3.650 10 O -0.448 6.448 11 N -0.331 5.331 12 C 0.100 3.900 13 C -0.127 4.127 14 C -0.060 4.060 15 Cl -0.049 7.049 16 C -0.137 4.137 17 C -0.146 4.146 18 C -0.010 4.010 19 O -0.216 6.216 20 C -0.024 4.024 21 C -0.140 4.140 22 H 0.085 0.915 23 H 0.231 0.769 24 H 0.190 0.810 25 H 0.142 0.858 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.046 -12.517 -0.368 12.888 hybrid contribution 0.793 0.531 0.046 0.955 sum 3.839 -11.987 -0.322 12.590 Atomic orbital electron populations 1.69990 1.07273 1.28149 1.31764 1.25762 0.94679 1.00702 0.92414 0.86313 0.79851 0.80282 0.79729 1.18999 1.20297 1.19025 1.20020 0.94423 0.89880 1.52635 0.91072 1.17109 0.87614 0.82010 0.78223 1.90605 1.13472 1.85711 1.54986 1.44173 1.09980 1.04028 1.74919 1.17164 0.93232 0.84542 0.95061 1.21368 0.93498 0.98566 0.99313 1.20461 0.88417 0.94567 1.02525 1.98323 1.27298 1.98865 1.80451 1.19793 0.94794 0.97028 1.02046 1.20226 0.96026 0.94475 1.03833 1.19395 0.88184 0.94466 0.98969 1.86905 1.36354 1.26854 1.71443 1.23733 0.96473 0.79430 1.02777 1.21718 0.93474 0.97246 1.01553 0.91460 0.76919 0.80981 0.85757 0.88125 0.91018 0.89406 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.23 11.73 55.55 0.65 -20.58 15 2 C 0.09 2.34 5.50 -17.35 -0.10 2.24 15 3 Si 0.91 19.23 29.56 -169.99 -5.02 14.21 15 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 7 C -0.53 -14.50 9.32 -37.51 -0.35 -14.85 15 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 15 9 C 0.54 14.98 7.37 -14.90 -0.11 14.87 15 10 O -0.56 -17.32 12.02 5.12 0.06 -17.26 15 11 N -0.69 -16.07 5.34 -12.22 -0.07 -16.13 15 12 C 0.20 4.40 6.45 -83.46 -0.54 3.86 15 13 C -0.11 -2.33 8.47 -39.42 -0.33 -2.66 15 14 C -0.03 -0.60 6.32 -39.46 -0.25 -0.85 15 15 Cl -0.08 -1.32 28.96 -51.86 -1.50 -2.83 15 16 C -0.12 -1.88 9.82 -39.59 -0.39 -2.26 15 17 C -0.14 -2.29 6.27 -104.12 -0.65 -2.95 15 18 C 0.04 0.71 6.94 -38.71 -0.27 0.44 15 19 O -0.30 -5.06 11.13 -21.11 -0.23 -5.29 15 20 C 0.05 0.58 8.00 38.05 0.30 0.89 15 21 C -0.10 -1.16 7.12 -26.51 -0.19 -1.35 15 22 H 0.27 7.08 8.29 -40.82 -0.34 6.74 15 23 H 0.40 8.25 8.74 -40.82 -0.36 7.89 15 24 H 0.17 4.36 5.75 -52.49 -0.30 4.05 15 25 H 0.12 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.10 0.87 8.14 -51.93 -0.42 0.45 15 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 272.91 15.07 4.11 4.11 Total: -1.00 -31.78 272.91 -7.19 -38.97 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -2.32 Total: 7.43 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.87 Total: -2.62 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.59 Total: -36.71 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.17 Total: -22.56 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.83 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.78 -7.19 -38.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125508687.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.745 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds