Wall clock time and date at job start Mon Mar 30 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86806 * 119.99713 * 2 1 4 4 H 1.48494 * 109.47073 * 239.99784 * 3 2 1 5 5 H 1.48503 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46643 * 119.99753 * 3 2 1 7 7 C 1.40130 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.41801 * 119.99891 * 0.02562 * 7 2 1 10 10 O 1.21778 * 120.00217 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00140 * 179.97438 * 9 7 2 12 12 C 1.39560 * 120.00327 * 185.52305 * 11 9 7 13 13 C 1.38740 * 119.95229 * 24.89705 * 12 11 9 14 14 C 1.38183 * 120.24250 * 180.02562 * 13 12 11 15 15 Cl 1.73599 * 120.08825 * 179.79046 * 14 13 12 16 16 C 1.38612 * 119.82998 * 359.81520 * 14 13 12 17 17 C 1.37841 * 120.14521 * 359.97375 * 16 14 13 18 18 C 1.38706 * 120.84778 * 0.36130 * 17 16 14 19 19 O 1.36427 * 111.36398 * 179.11652 * 18 17 16 20 20 C 1.43769 * 109.08003 * 18.71225 * 19 18 17 21 21 C 1.51663 * 132.10321 * 180.37660 * 17 16 14 22 22 H 0.97001 * 120.00212 * 359.97438 * 1 2 3 23 23 H 0.96994 * 119.99722 * 5.53283 * 11 9 7 24 24 H 1.07997 * 119.88338 * 0.02562 * 13 12 11 25 25 H 1.08001 * 119.92493 * 179.97438 * 16 14 13 26 26 H 1.08993 * 110.75834 * 214.13331 * 20 19 18 27 27 H 1.09003 * 110.75560 * 90.95355 * 20 19 18 28 28 H 1.09003 * 110.93483 * 46.43667 * 21 17 16 29 29 H 1.08998 * 110.97141 * 282.76663 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2752 2.7465 0.0006 6 1 3.0939 1.6965 1.2126 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2981 -2.4416 -0.0016 10 8 0.0803 -2.4417 -0.0026 11 7 1.9720 -3.6088 -0.0027 12 6 1.2791 -4.8146 -0.1201 13 6 0.0353 -4.8418 -0.7340 14 6 -0.6562 -6.0322 -0.8530 15 17 -2.2148 -6.0608 -1.6172 16 6 -0.1025 -7.2035 -0.3603 17 6 1.1349 -7.1823 0.2466 18 6 1.8408 -5.9960 0.3814 19 8 3.0274 -6.1940 1.0248 20 6 3.3662 -7.5900 0.9669 21 6 1.9842 -8.2775 0.8627 22 1 -0.4850 0.8400 0.0004 23 1 2.9385 -3.6108 0.0783 24 1 -0.3942 -3.9293 -1.1204 25 1 -0.6418 -8.1347 -0.4521 26 1 3.8842 -7.8998 1.8744 27 1 3.9716 -7.8043 0.0862 28 1 2.0308 -9.1485 0.2090 29 1 1.6107 -8.5526 1.8490 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125508687.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:16 Heat of formation + Delta-G solvation = -70.888088 kcal Electronic energy + Delta-G solvation = -17610.042948 eV Core-core repulsion = 14523.475211 eV Total energy + Delta-G solvation = -3086.567737 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.11532 -40.10029 -38.39581 -37.08757 -35.51719 -34.56296 -32.83170 -30.43382 -30.08004 -28.34538 -24.58196 -23.34721 -23.27132 -21.39086 -19.67850 -18.35030 -18.10947 -17.68019 -17.04121 -16.88826 -16.17724 -15.89499 -15.26671 -14.76400 -14.46721 -14.21452 -13.96892 -13.84348 -13.31307 -13.23569 -12.87429 -12.81302 -12.70722 -12.62830 -12.38297 -12.07444 -11.87739 -11.55951 -11.05563 -10.83603 -9.89617 -9.27736 -8.62565 -8.40536 -7.05239 0.15512 0.29738 1.14080 1.38643 1.40994 1.54226 2.19127 2.26855 2.35026 2.62996 2.86186 3.46780 3.59396 3.78729 4.05582 4.23429 4.26144 4.45432 4.53035 4.78227 4.85683 4.97844 5.00352 5.18457 5.22456 5.31116 5.51867 5.83337 5.93311 6.08765 6.35320 6.70294 7.29968 8.32286 8.51850 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.006207 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.778426 B = 4509.661919 C = 5814.573088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.033 3.967 3 Si 1.002 2.998 4 H -0.253 1.253 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.563 4.563 8 H 0.089 0.911 9 C 0.527 3.473 10 O -0.607 6.607 11 N -0.688 5.688 12 C 0.160 3.840 13 C -0.131 4.131 14 C -0.042 4.042 15 Cl -0.068 7.068 16 C -0.098 4.098 17 C -0.137 4.137 18 C 0.041 3.959 19 O -0.322 6.322 20 C 0.042 3.958 21 C -0.094 4.094 22 H 0.281 0.719 23 H 0.406 0.594 24 H 0.128 0.872 25 H 0.164 0.836 26 H 0.133 0.867 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -15.140 0.204 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.186 4.186 3 Si 0.821 3.179 4 H -0.177 1.177 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.598 4.598 8 H 0.108 0.892 9 C 0.337 3.663 10 O -0.495 6.495 11 N -0.331 5.331 12 C 0.060 3.940 13 C -0.153 4.153 14 C -0.069 4.069 15 Cl -0.039 7.039 16 C -0.118 4.118 17 C -0.139 4.139 18 C -0.008 4.008 19 O -0.237 6.237 20 C -0.032 4.032 21 C -0.130 4.130 22 H 0.091 0.909 23 H 0.240 0.760 24 H 0.146 0.854 25 H 0.181 0.819 26 H 0.151 0.849 27 H 0.108 0.892 28 H 0.142 0.858 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.844 -14.797 0.242 15.571 hybrid contribution 0.250 0.985 -0.132 1.024 sum 5.094 -13.812 0.110 14.722 Atomic orbital electron populations 1.70146 1.09641 1.29708 1.33027 1.27024 0.95533 1.05087 0.90935 0.84996 0.78261 0.74212 0.80435 1.17680 1.19523 1.17745 1.20553 0.95516 0.90541 1.53203 0.89245 1.17461 0.87374 0.83597 0.77907 1.90572 1.15204 1.86855 1.56829 1.43711 1.10187 1.03910 1.75308 1.17382 0.93943 0.85086 0.97579 1.21004 0.94670 0.98384 1.01276 1.20564 0.88851 0.94449 1.03074 1.98318 1.26472 1.98828 1.80281 1.20197 0.94737 0.97201 0.99641 1.20866 0.95643 0.95233 1.02130 1.19454 0.89287 0.93994 0.98018 1.86891 1.35424 1.30525 1.70840 1.24210 0.97184 0.76409 1.05429 1.21899 0.91718 0.96576 1.02851 0.90924 0.75959 0.85408 0.81880 0.84927 0.89241 0.85755 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.62 11.73 21.85 0.26 -47.37 15 2 C 0.03 1.80 5.50 85.33 0.47 2.26 15 3 Si 1.00 39.86 29.56 68.60 2.03 41.88 15 4 H -0.25 -9.47 7.11 99.48 0.71 -8.76 15 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 15 7 C -0.56 -31.74 9.32 23.61 0.22 -31.52 15 8 H 0.09 4.50 7.85 -2.91 -0.02 4.48 15 9 C 0.53 31.03 7.37 85.12 0.63 31.65 15 10 O -0.61 -40.16 12.02 -4.60 -0.06 -40.21 15 11 N -0.69 -33.88 5.34 -310.77 -1.66 -35.54 15 12 C 0.16 7.25 6.45 38.48 0.25 7.50 15 13 C -0.13 -6.13 8.47 22.38 0.19 -5.94 15 14 C -0.04 -1.58 6.32 22.35 0.14 -1.44 15 15 Cl -0.07 -2.31 28.96 -2.72 -0.08 -2.39 15 16 C -0.10 -2.91 9.82 22.27 0.22 -2.69 15 17 C -0.14 -3.96 6.27 -19.54 -0.12 -4.08 15 18 C 0.04 1.49 6.94 22.83 0.16 1.64 15 19 O -0.32 -10.20 11.13 -98.47 -1.10 -11.30 15 20 C 0.04 0.77 8.00 72.56 0.58 1.35 15 21 C -0.09 -1.63 7.12 30.74 0.22 -1.41 15 22 H 0.28 15.10 8.29 -92.71 -0.77 14.33 15 23 H 0.41 17.65 8.74 -92.71 -0.81 16.84 15 24 H 0.13 7.12 5.75 -2.91 -0.02 7.10 15 25 H 0.16 3.59 8.06 -2.91 -0.02 3.57 15 26 H 0.13 1.62 8.14 -2.39 -0.02 1.61 15 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 15 28 H 0.12 1.36 8.14 -2.39 -0.02 1.35 15 29 H 0.11 1.56 8.14 -2.39 -0.02 1.54 15 Total: -1.00 -75.37 272.91 2.74 -72.63 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.40 Total: 24.97 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 2.95 Total: -2.67 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -1.40 Total: -82.91 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -1.15 Total: -51.51 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.08 Total: -2.39 kcal Total: -75.37 2.74 -72.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125508687.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.739 kcal (2) G-P(sol) polarization free energy of solvation -75.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds