Wall clock time and date at job start Mon Mar 30 2020 05:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45202 * 109.47394 * 2 1 4 4 C 1.34225 * 117.00155 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00494 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99842 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.35416 * 302.14483 * 6 4 3 8 8 C 1.54123 * 110.31046 * 180.02562 * 6 4 3 9 9 C 1.54219 * 101.94919 * 267.85520 * 8 6 4 10 10 C 1.51966 * 104.87949 * 333.35607 * 9 8 6 11 11 S 1.71587 * 139.71620 * 197.49516 * 10 9 8 12 12 C 1.75805 * 90.48159 * 179.97438 * 11 10 9 13 13 C 1.39920 * 125.53294 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99349 * 191.64411 * 13 12 11 15 15 C 1.40245 * 120.00064 * 11.63685 * 13 12 11 16 16 N 1.30693 * 119.99691 * 200.93931 * 15 13 12 17 17 Si 1.86798 * 120.00164 * 20.94114 * 15 13 12 18 18 H 1.48504 * 109.46988 * 269.99873 * 17 15 13 19 19 H 1.48499 * 109.47334 * 149.99553 * 17 15 13 20 20 H 1.48500 * 109.47054 * 29.99760 * 17 15 13 21 21 N 1.31086 * 108.93148 * 0.25093 * 12 11 10 22 22 C 1.32328 * 116.51961 * 359.56424 * 21 12 11 23 23 H 1.08994 * 109.47169 * 60.00293 * 1 2 3 24 24 H 1.09006 * 109.47313 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47393 * 300.00307 * 1 2 3 26 26 H 1.08996 * 109.47393 * 239.99693 * 2 1 3 27 27 H 1.09008 * 109.47051 * 119.99705 * 2 1 3 28 28 H 1.09002 * 110.93318 * 149.69749 * 8 6 4 29 29 H 1.08998 * 110.93458 * 26.02112 * 8 6 4 30 30 H 1.08992 * 110.36330 * 214.49918 * 9 8 6 31 31 H 1.09002 * 110.35461 * 92.20157 * 9 8 6 32 32 H 0.97001 * 120.00609 * 354.67071 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5635 3.4950 -0.8658 8 6 5.4608 2.8793 0.0001 9 6 5.7819 2.9243 1.5078 10 6 4.6050 3.6521 2.1359 11 16 4.1943 4.4672 3.5889 12 6 2.5816 4.7917 2.9685 13 6 1.5718 5.4805 3.6493 14 1 0.5606 5.4693 3.2703 15 6 1.8728 6.1852 4.8239 16 7 0.9227 6.4767 5.6726 17 14 3.6316 6.7073 5.1752 18 1 4.3233 5.6361 5.9362 19 1 3.6262 7.9584 5.9751 20 1 4.3435 6.9426 3.8933 21 7 2.4770 4.2783 1.7669 22 6 3.5485 3.6646 1.2912 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.8831 3.7427 -0.5139 29 1 5.8155 1.9502 -0.4461 30 1 6.7057 3.4756 1.6826 31 1 5.8608 1.9138 1.9090 32 1 -0.0008 6.2747 5.4552 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131818597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:16 Heat of formation + Delta-G solvation = -68.645430 kcal Electronic energy + Delta-G solvation = -18037.644630 eV Core-core repulsion = 15089.050943 eV Total energy + Delta-G solvation = -2948.593687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46938 -38.49740 -36.46318 -35.08343 -33.68105 -31.62536 -28.85544 -28.58530 -25.56315 -23.52614 -21.89555 -21.55235 -19.98824 -18.82435 -17.93411 -17.31834 -16.82422 -16.30276 -15.84225 -14.42423 -14.04201 -13.95055 -13.77119 -13.15501 -12.98141 -12.88669 -12.69881 -12.56688 -12.03564 -11.73933 -11.59258 -11.43401 -11.23944 -10.85554 -10.76987 -10.62275 -10.32993 -10.29459 -10.18886 -9.53211 -9.26805 -8.01246 -7.91730 -7.79669 -7.47499 -4.87025 2.13335 2.47160 2.56322 2.92124 3.05182 3.09836 3.29666 3.64998 3.80382 3.93267 4.78143 4.87365 4.99997 5.02406 5.03833 5.13772 5.33272 5.40147 5.66860 5.77097 5.85697 5.96803 6.07717 6.08877 6.20447 6.46054 6.53185 6.71539 6.87723 7.11901 7.15397 7.74771 8.00506 8.07448 8.14343 9.45522 9.58383 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.006969 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.657229 B = 4016.710338 C = 4961.579250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.342 6.342 4 C 0.483 3.517 5 O -0.516 6.516 6 C -0.005 4.005 7 H 0.110 0.890 8 C -0.103 4.103 9 C -0.014 4.014 10 C -0.390 4.390 11 S -0.046 6.046 12 C 0.234 3.766 13 C -0.433 4.433 14 H 0.105 0.895 15 C 0.055 3.945 16 N -0.774 5.774 17 Si 0.975 3.025 18 H -0.235 1.235 19 H -0.244 1.244 20 H -0.226 1.226 21 N -0.582 5.582 22 C 0.109 3.891 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -5.512 -6.772 9.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.258 6.258 4 C 0.327 3.673 5 O -0.405 6.405 6 C -0.026 4.026 7 H 0.128 0.872 8 C -0.141 4.141 9 C -0.054 4.054 10 C -0.513 4.513 11 S 0.211 5.789 12 C -0.018 4.018 13 C -0.477 4.477 14 H 0.123 0.877 15 C -0.172 4.172 16 N -0.396 5.396 17 Si 0.796 3.204 18 H -0.161 1.161 19 H -0.168 1.168 20 H -0.150 1.150 21 N -0.303 5.303 22 C -0.029 4.029 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.382 -4.810 -4.922 8.159 hybrid contribution -1.196 -1.348 -1.859 2.589 sum 3.186 -6.158 -6.781 9.698 Atomic orbital electron populations 1.21777 0.92776 1.02444 1.03841 1.22969 0.95455 0.80875 1.02025 1.86634 1.24345 1.31401 1.83397 1.23515 0.80528 0.92195 0.71100 1.90581 1.60535 1.42966 1.46454 1.20220 0.96310 0.88577 0.97539 0.87171 1.22268 0.91010 1.03065 0.97801 1.20196 0.94582 0.98094 0.92493 1.25203 1.03537 1.20473 1.02103 1.83324 1.18295 1.57630 1.19609 1.23777 0.91689 0.96457 0.89855 1.20037 0.96340 1.24474 1.06831 0.87683 1.27266 1.07482 0.91933 0.90557 1.70490 1.03718 1.33721 1.31672 0.84272 0.72899 0.81624 0.81604 1.16080 1.16830 1.15010 1.66564 1.27400 1.24273 1.12040 1.20544 0.89569 0.98215 0.94541 0.91550 0.90598 0.91200 0.91629 0.91569 0.89913 0.89208 0.92234 0.92115 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.29 37.15 0.38 -1.42 16 2 C 0.06 0.89 6.19 37.15 0.23 1.12 16 3 O -0.34 -6.46 10.22 -39.25 -0.40 -6.86 16 4 C 0.48 9.32 7.25 36.00 0.26 9.58 16 5 O -0.52 -10.18 15.22 -18.75 -0.29 -10.47 16 6 C 0.00 -0.09 3.40 -91.29 -0.31 -0.40 16 7 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 8 C -0.10 -1.65 6.38 -25.51 -0.16 -1.82 16 9 C -0.01 -0.26 6.78 -26.62 -0.18 -0.44 16 10 C -0.39 -8.99 7.19 -34.74 -0.25 -9.24 16 11 S -0.05 -1.10 16.95 -107.50 -1.82 -2.93 16 12 C 0.23 6.20 6.74 -17.24 -0.12 6.09 16 13 C -0.43 -11.36 9.79 -38.20 -0.37 -11.73 16 14 H 0.11 2.83 8.06 -52.49 -0.42 2.41 16 15 C 0.05 1.36 5.50 -17.28 -0.10 1.26 16 16 N -0.77 -19.04 13.65 55.56 0.76 -18.28 16 17 Si 0.98 20.80 24.78 -169.99 -4.21 16.59 16 18 H -0.24 -4.87 6.86 56.52 0.39 -4.49 16 19 H -0.24 -4.83 7.11 56.52 0.40 -4.43 16 20 H -0.23 -4.83 6.53 56.52 0.37 -4.46 16 21 N -0.58 -15.45 10.69 -8.43 -0.09 -15.54 16 22 C 0.11 2.57 6.94 -82.39 -0.57 2.00 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.86 8.13 -51.93 -0.42 0.43 16 27 H 0.07 0.99 8.13 -51.92 -0.42 0.57 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.34 6.99 -51.93 -0.36 0.98 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.30 6.98 8.73 -40.82 -0.36 6.63 16 LS Contribution 285.50 15.07 4.30 4.30 Total: -1.00 -29.28 285.50 -6.73 -36.01 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.79 Total: 2.17 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -1.19 Total: -5.00 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.67 Total: -33.82 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.69 Total: -17.33 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.21 Total: 16.59 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -1.82 Total: -2.93 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.28 -6.73 -36.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131818597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.640 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds