Wall clock time and date at job start Mon Mar 30 2020 05:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45202 * 109.47394 * 2 1 4 4 C 1.34225 * 117.00155 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00494 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99842 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.35416 * 302.14483 * 6 4 3 8 8 C 1.54123 * 110.31046 * 180.02562 * 6 4 3 9 9 C 1.54219 * 101.94919 * 267.85520 * 8 6 4 10 10 C 1.51966 * 104.87949 * 333.35607 * 9 8 6 11 11 S 1.71587 * 139.71620 * 197.49516 * 10 9 8 12 12 C 1.75805 * 90.48159 * 179.97438 * 11 10 9 13 13 C 1.39920 * 125.53294 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99349 * 191.64411 * 13 12 11 15 15 C 1.40245 * 120.00064 * 11.63685 * 13 12 11 16 16 N 1.30693 * 119.99691 * 200.93931 * 15 13 12 17 17 Si 1.86798 * 120.00164 * 20.94114 * 15 13 12 18 18 H 1.48504 * 109.46988 * 269.99873 * 17 15 13 19 19 H 1.48499 * 109.47334 * 149.99553 * 17 15 13 20 20 H 1.48500 * 109.47054 * 29.99760 * 17 15 13 21 21 N 1.31086 * 108.93148 * 0.25093 * 12 11 10 22 22 C 1.32328 * 116.51961 * 359.56424 * 21 12 11 23 23 H 1.08994 * 109.47169 * 60.00293 * 1 2 3 24 24 H 1.09006 * 109.47313 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47393 * 300.00307 * 1 2 3 26 26 H 1.08996 * 109.47393 * 239.99693 * 2 1 3 27 27 H 1.09008 * 109.47051 * 119.99705 * 2 1 3 28 28 H 1.09002 * 110.93318 * 149.69749 * 8 6 4 29 29 H 1.08998 * 110.93458 * 26.02112 * 8 6 4 30 30 H 1.08992 * 110.36330 * 214.49918 * 9 8 6 31 31 H 1.09002 * 110.35461 * 92.20157 * 9 8 6 32 32 H 0.97001 * 120.00609 * 354.67071 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5635 3.4950 -0.8658 8 6 5.4608 2.8793 0.0001 9 6 5.7819 2.9243 1.5078 10 6 4.6050 3.6521 2.1359 11 16 4.1943 4.4672 3.5889 12 6 2.5816 4.7917 2.9685 13 6 1.5718 5.4805 3.6493 14 1 0.5606 5.4693 3.2703 15 6 1.8728 6.1852 4.8239 16 7 0.9227 6.4767 5.6726 17 14 3.6316 6.7073 5.1752 18 1 4.3233 5.6361 5.9362 19 1 3.6262 7.9584 5.9751 20 1 4.3435 6.9426 3.8933 21 7 2.4770 4.2783 1.7669 22 6 3.5485 3.6646 1.2912 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.8831 3.7427 -0.5139 29 1 5.8155 1.9502 -0.4461 30 1 6.7057 3.4756 1.6826 31 1 5.8608 1.9138 1.9090 32 1 -0.0008 6.2747 5.4552 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131818597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:16 Heat of formation + Delta-G solvation = -86.618663 kcal Electronic energy + Delta-G solvation = -18038.424008 eV Core-core repulsion = 15089.050943 eV Total energy + Delta-G solvation = -2949.373065 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.95227 -40.17951 -37.95521 -36.79533 -35.48885 -32.75721 -30.68586 -30.08302 -27.27058 -24.81968 -23.51489 -23.07938 -21.59780 -20.55186 -19.68973 -18.82844 -18.59386 -17.70197 -17.27670 -16.13923 -15.65539 -15.49915 -15.26841 -14.86532 -14.58950 -14.43891 -14.25672 -13.74864 -13.59375 -13.22082 -12.96970 -12.87900 -12.58325 -12.41535 -12.25128 -12.15666 -11.98629 -11.71957 -11.58566 -11.39326 -11.01465 -9.93622 -9.81391 -9.71881 -9.36190 -6.83164 0.28889 0.72595 0.98564 1.16045 1.32967 1.53862 1.64538 1.90964 2.08178 2.14386 2.91078 3.24844 3.53791 3.73241 3.92153 4.00499 4.03029 4.23601 4.26700 4.60729 4.68731 4.75716 4.82988 4.83585 4.99786 5.04399 5.09438 5.16775 5.20713 5.35279 5.39862 5.70795 6.09203 6.20933 6.63046 7.55434 7.66009 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.006969 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.657229 B = 4016.710338 C = 4961.579250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.363 6.363 4 C 0.481 3.519 5 O -0.524 6.524 6 C -0.007 4.007 7 H 0.129 0.871 8 C -0.088 4.088 9 C -0.015 4.015 10 C -0.392 4.392 11 S -0.035 6.035 12 C 0.212 3.788 13 C -0.461 4.461 14 H 0.080 0.920 15 C 0.034 3.966 16 N -0.784 5.784 17 Si 0.996 3.004 18 H -0.225 1.225 19 H -0.215 1.215 20 H -0.229 1.229 21 N -0.612 5.612 22 C 0.083 3.917 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.255 -6.191 -7.696 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.279 6.279 4 C 0.325 3.675 5 O -0.414 6.414 6 C -0.029 4.029 7 H 0.147 0.853 8 C -0.127 4.127 9 C -0.055 4.055 10 C -0.515 4.515 11 S 0.222 5.778 12 C -0.041 4.041 13 C -0.506 4.506 14 H 0.098 0.902 15 C -0.190 4.190 16 N -0.406 5.406 17 Si 0.812 3.188 18 H -0.150 1.150 19 H -0.138 1.138 20 H -0.153 1.153 21 N -0.333 5.333 22 C -0.053 4.053 23 H 0.090 0.910 24 H 0.128 0.872 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.316 -5.505 -5.855 10.222 hybrid contribution -1.835 -1.253 -1.633 2.757 sum 4.481 -6.758 -7.488 11.037 Atomic orbital electron populations 1.21813 0.90833 1.04447 1.03147 1.23321 0.97060 0.79186 1.02600 1.86629 1.24294 1.33879 1.83146 1.23592 0.80701 0.92287 0.70924 1.90565 1.60670 1.43192 1.46931 1.20483 0.98303 0.88106 0.96000 0.85283 1.22343 0.88704 1.05371 0.96271 1.20383 0.93788 0.97580 0.93732 1.25964 1.05310 1.19156 1.01086 1.83168 1.16625 1.57608 1.20406 1.23929 0.93074 0.96832 0.90272 1.20018 0.95535 1.26685 1.08327 0.90223 1.28184 1.09852 0.91170 0.89812 1.70528 1.03821 1.34373 1.31842 0.84073 0.69773 0.82975 0.81974 1.14955 1.13812 1.15276 1.66572 1.29279 1.25030 1.12446 1.21200 0.88792 0.98449 0.96813 0.90951 0.87224 0.93120 0.89704 0.92275 0.86916 0.87497 0.89755 0.92240 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 10.29 71.98 0.74 -2.55 16 2 C 0.05 1.46 6.19 71.98 0.45 1.90 16 3 O -0.36 -13.49 10.22 -51.37 -0.52 -14.02 16 4 C 0.48 17.82 7.25 71.24 0.52 18.33 16 5 O -0.52 -19.58 15.22 21.97 0.33 -19.24 16 6 C -0.01 -0.26 3.40 -11.23 -0.04 -0.30 16 7 H 0.13 4.05 8.14 -2.39 -0.02 4.03 16 8 C -0.09 -2.51 6.38 31.39 0.20 -2.31 16 9 C -0.02 -0.52 6.78 30.67 0.21 -0.31 16 10 C -0.39 -17.43 7.19 25.41 0.18 -17.25 16 11 S -0.04 -1.67 16.95 -56.49 -0.96 -2.62 16 12 C 0.21 11.45 6.74 85.21 0.57 12.02 16 13 C -0.46 -25.15 9.79 23.17 0.23 -24.93 16 14 H 0.08 4.58 8.06 -2.91 -0.02 4.56 16 15 C 0.03 1.69 5.50 85.35 0.47 2.16 16 16 N -0.78 -39.13 13.65 21.88 0.30 -38.83 16 17 Si 1.00 41.06 24.78 68.60 1.70 42.76 16 18 H -0.22 -8.84 6.86 99.48 0.68 -8.16 16 19 H -0.22 -7.88 7.11 99.48 0.71 -7.18 16 20 H -0.23 -9.46 6.53 99.48 0.65 -8.81 16 21 N -0.61 -32.93 10.69 -180.58 -1.93 -34.86 16 22 C 0.08 3.86 6.94 42.48 0.29 4.16 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 27 H 0.06 1.73 8.13 -2.38 -0.02 1.71 16 28 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.11 2.74 6.99 -2.39 -0.02 2.72 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.29 14.31 8.73 -92.71 -0.81 13.50 16 Total: -1.00 -63.67 285.50 3.76 -59.91 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 1.01 Total: 15.97 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 3.82 Total: -9.07 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.63 Total: -73.70 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.19 Total: -33.26 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.70 Total: 42.76 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -0.96 Total: -2.62 kcal Total: -63.67 3.76 -59.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131818597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.706 kcal (2) G-P(sol) polarization free energy of solvation -63.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds