Wall clock time and date at job start Mon Mar 30 2020 04:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 120.00196 * 2 1 4 4 H 1.48500 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47120 * 300.00616 * 3 2 1 6 6 H 1.48501 * 109.46682 * 60.00630 * 3 2 1 7 7 C 1.38947 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99682 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99675 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00651 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99318 * 180.02562 * 10 9 7 13 13 S 1.81400 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.76196 * 102.99988 * 179.97438 * 13 12 10 15 15 C 1.38979 * 120.07969 * 180.02562 * 14 13 12 16 16 C 1.38085 * 119.91784 * 180.02562 * 15 14 13 17 17 C 1.38298 * 120.08130 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.91928 * 180.02562 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.00082 * 18 17 16 20 20 C 1.38306 * 120.16030 * 0.27010 * 17 16 15 21 21 C 1.38080 * 120.07826 * 359.46211 * 20 17 16 22 22 H 0.97005 * 119.99891 * 359.97438 * 1 2 3 23 23 H 0.96997 * 119.99611 * 0.02562 * 9 7 2 24 24 H 1.08994 * 109.47717 * 59.99884 * 12 10 9 25 25 H 1.09001 * 109.46877 * 299.99129 * 12 10 9 26 26 H 1.08005 * 120.03952 * 359.97438 * 15 14 13 27 27 H 1.08001 * 119.95566 * 179.97438 * 16 15 14 28 28 H 1.09000 * 109.47247 * 330.00017 * 18 17 16 29 29 H 1.09001 * 109.47358 * 209.99444 * 18 17 16 30 30 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 31 31 H 1.07998 * 119.95959 * 179.72792 * 20 17 16 32 32 H 1.07998 * 120.03744 * 180.27274 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3462 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0001 12 6 1.2435 -4.8629 -0.0011 13 16 2.4222 -6.2418 -0.0002 14 6 1.3749 -7.6586 -0.0003 15 6 1.9278 -8.9337 0.0009 16 6 1.1039 -10.0417 0.0003 17 6 -0.2701 -9.8839 -0.0009 18 6 -1.1659 -11.0957 -0.0009 19 8 -1.4501 -11.4779 1.3464 20 6 -0.8239 -8.6166 -0.0071 21 6 -0.0062 -7.5039 -0.0010 22 1 -0.4850 0.8401 0.0004 23 1 0.3533 -2.3906 -0.0005 24 1 0.6172 -4.9205 -0.8913 25 1 0.6166 -4.9209 0.8887 26 1 3.0008 -9.0577 0.0014 27 1 1.5329 -11.0328 0.0008 28 1 -0.6658 -11.9172 -0.5139 29 1 -2.0972 -10.8591 -0.5155 30 1 -2.0235 -12.2528 1.4228 31 1 -1.8973 -8.4971 -0.0124 32 1 -0.4394 -6.5146 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160468668.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:19 Heat of formation + Delta-G solvation = -64.711941 kcal Electronic energy + Delta-G solvation = -16626.798267 eV Core-core repulsion = 13678.375149 eV Total energy + Delta-G solvation = -2948.423118 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.32661 -38.22194 -36.78793 -34.09598 -31.94110 -31.44653 -31.12237 -29.25405 -26.22419 -24.74148 -22.72438 -21.55879 -19.65740 -18.15749 -17.71242 -17.50122 -16.14993 -15.85500 -15.63211 -14.70263 -14.68364 -14.53537 -14.05073 -13.92389 -13.62447 -13.42090 -13.03029 -12.58339 -12.32706 -12.06446 -11.61469 -11.35372 -11.14446 -11.11064 -10.40468 -10.34981 -10.31229 -9.87019 -9.64575 -9.62023 -9.01281 -8.65121 -8.10981 -7.13901 -6.52651 -3.94220 1.09798 1.35178 1.67499 2.71064 3.10104 3.22560 3.30075 3.51695 3.70456 4.09589 4.26960 4.64924 4.76750 4.79893 4.93985 5.03720 5.10208 5.12889 5.31769 5.52621 5.53603 5.59036 5.71571 5.95545 6.09000 6.22154 6.28847 6.48082 6.84582 7.32635 7.45980 7.90766 8.43985 9.04202 9.37008 9.86214 10.64622 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.045019 B = 0.003330 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.813787 B = 8407.348725 C = 8938.726185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.550 5.550 10 C 0.452 3.548 11 O -0.578 6.578 12 C -0.135 4.135 13 S -0.028 6.028 14 C -0.088 4.088 15 C -0.108 4.108 16 C -0.080 4.080 17 C -0.114 4.114 18 C 0.121 3.879 19 O -0.568 6.568 20 C -0.077 4.077 21 C -0.142 4.142 22 H 0.273 0.727 23 H 0.394 0.606 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.377 0.623 31 H 0.123 0.877 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 -19.320 -0.966 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.186 5.186 10 C 0.236 3.764 11 O -0.463 6.463 12 C -0.286 4.286 13 S 0.218 5.782 14 C -0.202 4.202 15 C -0.132 4.132 16 C -0.100 4.100 17 C -0.118 4.118 18 C 0.044 3.956 19 O -0.374 6.374 20 C -0.097 4.097 21 C -0.166 4.166 22 H 0.083 0.917 23 H 0.228 0.772 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.224 0.776 31 H 0.141 0.859 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.023 -18.381 -0.846 18.648 hybrid contribution -2.194 0.321 -0.151 2.223 sum -5.218 -18.060 -0.996 18.825 Atomic orbital electron populations 1.69619 1.06024 1.28388 1.49753 1.25315 0.95682 0.99908 0.96844 0.85750 0.79764 0.80744 0.77821 1.19056 1.20602 1.20592 1.19805 0.93532 0.81856 1.47962 0.87557 1.41763 1.09314 1.04241 1.63283 1.18879 0.87927 0.83711 0.85851 1.90570 1.13230 1.86425 1.56068 1.23785 1.01854 0.96806 1.06190 1.86186 1.08995 0.92604 1.90377 1.22424 0.97153 0.98898 1.01685 1.20707 0.99963 0.90328 1.02247 1.20904 0.92635 0.98337 0.98150 1.19525 0.93819 0.93905 1.04522 1.20940 0.96922 0.94150 0.83619 1.86606 1.72478 1.51683 1.26589 1.20912 0.99526 0.91605 0.97682 1.21243 0.92219 0.99442 1.03744 0.91684 0.77211 0.88003 0.87997 0.85320 0.85788 0.92891 0.92892 0.77572 0.85911 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.95 13.05 55.50 0.72 -23.22 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 3.07 7.16 -52.48 -0.38 2.70 16 9 N -0.55 -13.79 5.29 -10.96 -0.06 -13.85 16 10 C 0.45 10.71 7.80 -10.98 -0.09 10.63 16 11 O -0.58 -15.78 15.44 5.55 0.09 -15.69 16 12 C -0.13 -2.42 4.82 36.01 0.17 -2.24 16 13 S -0.03 -0.49 21.06 -107.50 -2.26 -2.75 16 14 C -0.09 -1.31 6.11 -39.04 -0.24 -1.55 16 15 C -0.11 -1.42 9.79 -39.36 -0.39 -1.81 16 16 C -0.08 -0.93 9.69 -39.62 -0.38 -1.31 16 17 C -0.11 -1.31 5.51 -104.58 -0.58 -1.89 16 18 C 0.12 1.03 7.17 36.01 0.26 1.29 16 19 O -0.57 -5.28 13.64 -35.23 -0.48 -5.76 16 20 C -0.08 -0.94 9.69 -39.61 -0.38 -1.32 16 21 C -0.14 -1.94 9.36 -39.37 -0.37 -2.31 16 22 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 23 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 24 H 0.10 1.61 7.75 -51.93 -0.40 1.21 16 25 H 0.10 1.63 7.75 -51.92 -0.40 1.23 16 26 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 27 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.38 1.53 9.12 45.56 0.42 1.94 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.61 5.88 -52.49 -0.31 1.31 16 LS Contribution 298.69 15.07 4.50 4.50 Total: -1.00 -32.67 298.69 -7.39 -40.06 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -2.64 Total: 9.45 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.23 Total: -8.42 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.67 Total: -37.07 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.39 Total: -21.45 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.26 Total: -2.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.67 -7.39 -40.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160468668.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.655 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds